MELO3C006671T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C006671T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Cortactin-binding protein 2
Location	chr6 : 4945828 .. 4946334 (-)
Sequence length	507

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGAAGAACGCCAAGGTGGAGCTCCCCACGCCATTCTCCTGGCCGTGGTTGTTGCCATCGTCATTGTAGTCCCTTTCCTACTCGGCGACCAAGGCGAGGCTCTCACCGACGCCATTTCCGACCTCCTAAGTCCCTTCGGTCTCCTCCTCCTCTTCCCCTTATCCTCCTCCTTCTCACCATCCAGTTCCTCTCCTCCGATCGCGGCTCCTTCGTCTCCGCCATCTTCTCCTCCGGCGAACCTGACTCCATCCACCGCGTCACTGGATCCCCCGTCGGCGTTGCTCTCTTCCTCGTTCTCATTCTCTTTCTCCTCTATAATCGGATTTCCATCTTCGGTGGCGACGATGATTCCGGCGACTTTGAAATTTGTTTGTTACTTACTTACTTACTTACTTAGATCTGTCTTTTCTTGCCATTTGTTCTTCTTCCTTGTAGTTTTTTTTTTTTACTGTGTATTGTTGTGTAAAGCTTTGCTTGATGAACCAAAGAGGAGTGAGTTGTAA

mRNA sequence

ATGATTGAAGAACGCCAAGGTGGAGCTCCCCACGCCATTCTCCTGGCCGTGGTTGTTGCCATCGTCATTGTAGTCCCTTTCCTACTCGGCGACCAAGGCGAGGCTCTCACCGACGCCATTTCCGACCTCCTAAGTCCCTTCGGTCTCCTCCTCCTCTTCCCCTTATCCTCCTCCTTCTCACCATCCAGTTCCTCTCCTCCGATCGCGGCTCCTTCGTCTCCGCCATCTTCTCCTCCGGCGAACCTGACTCCATCCACCGCGTCACTGGATCCCCCGTCGGCGTTGCTCTCTTCCTCGTTCTCATTCTCTTTCTCCTCTATAATCGGATTTCCATCTTCGGTGGCGACGATGATTCCGGCGACTTTGAAATTTGTTTGTTACTTACTTACTTACTTACTTAGATCTGTCTTTTCTTGCCATTTGTTCTTCTTCCTTGTAGTTTTTTTTTTTTACTGTGTATTGTTGTGTAAAGCTTTGCTTGATGAACCAAAGAGGAGTGAGTTGTAA

Coding sequence (CDS)

ATGATTGAAGAACGCCAAGGTGGAGCTCCCCACGCCATTCTCCTGGCCGTGGTTGTTGCCATCGTCATTGTAGTCCCTTTCCTACTCGGCGACCAAGGCGAGGCTCTCACCGACGCCATTTCCGACCTCCTAAGTCCCTTCGGTCTCCTCCTCCTCTTCCCCTTATCCTCCTCCTTCTCACCATCCAGTTCCTCTCCTCCGATCGCGGCTCCTTCGTCTCCGCCATCTTCTCCTCCGGCGAACCTGACTCCATCCACCGCGTCACTGGATCCCCCGTCGGCGTTGCTCTCTTCCTCGTTCTCATTCTCTTTCTCCTCTATAATCGGATTTCCATCTTCGGTGGCGACGATGATTCCGGCGACTTTGAAATTTGTTTGTTACTTACTTACTTACTTACTTAGATCTGTCTTTTCTTGCCATTTGTTCTTCTTCCTTGTAGTTTTTTTTTTTTACTGTGTATTGTTGTGTAAAGCTTTGCTTGATGAACCAAAGAGGAGTGAGTTGTAA

Protein sequence

MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLLFPLSSSFSPSSSSPPIAAPSSPPSSPPANLTPSTASLDPPSALLSSSFSFSFSSIIGFPSSVATMIPATLKFVCYLLTYLLRSVFSCHLFFFLVVFFFYCVLLCKALLDEPKRSEL*

Homology

[Close]

BLAST of MELO3C006671T1 vs. TAIR10
Match: AT3G06890.1 (AT3G06890.1 unknown protein)

HSP 1 Score: 72.0 bits (175), Expect = 3.9e-13
Identity = 33/46 (71.74%), Postives = 39/46 (84.78%), Query Frame = 1


Query: 7  GGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLL 53
          G APH I+LAVVVA+V++VPF +GD GEA+TDAI++LLSP GLLLL
Sbjct: 16 GSAPHGIILAVVVALVVLVPFFIGDSGEAITDAIAELLSPVGLLLL 61

[Close]

BLAST of MELO3C006671T1 vs. NCBI nr
Match: gi|449432860|ref|XP_004134216.1| (PREDICTED: uncharacterized protein LOC101205160 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 2.9e-18
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1


Query: 1  MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLL 53
          MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLL
Sbjct: 1  MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLL 52

[Close]

BLAST of MELO3C006671T1 vs. NCBI nr
Match: gi|951005158|ref|XP_014508058.1| (PREDICTED: uncharacterized protein LOC106767640 [Vigna radiata var. radiata])

HSP 1 Score: 79.7 bits (195), Expect = 5.3e-12
Identity = 42/61 (68.85%), Postives = 49/61 (80.33%), Query Frame = 1


Query: 1  MIEERQ---------GGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLL 53
          M+ ERQ         GGAPH ILLAVVVAIV++VPFL+GDQGEA+T+AIS+LLSP GLLL
Sbjct: 1  MVPERQHGGAGGGGGGGAPHGILLAVVVAIVVLVPFLVGDQGEAITEAISELLSPLGLLL 60

The following BLAST results are available for this feature:

BLAST of MELO3C006671T1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G06890.1	3.9e-13	71.74	unknown protein	[more]

BLAST of MELO3C006671T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432860\|ref\|XP_004134216.1\|	2.9e-18	100.00	PREDICTED: uncharacterized protein LOC101205160 [Cucumis sativus]	[more]
gi\|951005158\|ref\|XP_014508058.1\|	5.3e-12	68.85	PREDICTED: uncharacterized protein LOC106767640 [Vigna radiata var. radiata]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C006671	MELO3C006671	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C006671T1	MELO3C006671T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C006671T1.cds1	MELO3C006671T1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33306	FAMILY NOT NAMED	coord: 2..52 score: 3.0
None	No IPR available	PANTHER	PTHR33306:SF1	SUBFAMILY NOT NAMED	coord: 2..52 score: 3.0