MELO3C006671 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C006671
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionCortactin-binding protein 2
Locationchr6 : 4945828 .. 4946334 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGAAGAACGCCAAGGTGGAGCTCCCCACGCCATTCTCCTGGCCGTGGTTGTTGCCATCGTCATTGTAGTCCCTTTCCTACTCGGCGACCAAGGCGAGGCTCTCACCGACGCCATTTCCGACCTCCTAAGTCCCTTCGGTCTCCTCCTCCTCTTCCCCTTATCCTCCTCCTTCTCACCATCCAGTTCCTCTCCTCCGATCGCGGCTCCTTCGTCTCCGCCATCTTCTCCTCCGGCGAACCTGACTCCATCCACCGCGTCACTGGATCCCCCGTCGGCGTTGCTCTCTTCCTCGTTCTCATTCTCTTTCTCCTCTATAATCGGATTTCCATCTTCGGTGGCGACGATGATTCCGGCGACTTTGAAATTTGTTTGTTACTTACTTACTTACTTACTTAGATCTGTCTTTTCTTGCCATTTGTTCTTCTTCCTTGTAGTTTTTTTTTTTTACTGTGTATTGTTGTGTAAAGCTTTGCTTGATGAACCAAAGAGGAGTGAGTTGTAA

mRNA sequence

ATGATTGAAGAACGCCAAGGTGGAGCTCCCCACGCCATTCTCCTGGCCGTGGTTGTTGCCATCGTCATTGTAGTCCCTTTCCTACTCGGCGACCAAGGCGAGGCTCTCACCGACGCCATTTCCGACCTCCTAAGTCCCTTCGGTCTCCTCCTCCTCTTCCCCTTATCCTCCTCCTTCTCACCATCCAGTTCCTCTCCTCCGATCGCGGCTCCTTCGTCTCCGCCATCTTCTCCTCCGGCGAACCTGACTCCATCCACCGCGTCACTGGATCCCCCGTCGGCGTTGCTCTCTTCCTCGTTCTCATTCTCTTTCTCCTCTATAATCGGATTTCCATCTTCGGTGGCGACGATGATTCCGGCGACTTTGAAATTTGTTTGTTACTTACTTACTTACTTACTTAGATCTGTCTTTTCTTGCCATTTGTTCTTCTTCCTTGTAGTTTTTTTTTTTTACTGTGTATTGTTGTGTAAAGCTTTGCTTGATGAACCAAAGAGGAGTGAGTTGTAA

Coding sequence (CDS)

ATGATTGAAGAACGCCAAGGTGGAGCTCCCCACGCCATTCTCCTGGCCGTGGTTGTTGCCATCGTCATTGTAGTCCCTTTCCTACTCGGCGACCAAGGCGAGGCTCTCACCGACGCCATTTCCGACCTCCTAAGTCCCTTCGGTCTCCTCCTCCTCTTCCCCTTATCCTCCTCCTTCTCACCATCCAGTTCCTCTCCTCCGATCGCGGCTCCTTCGTCTCCGCCATCTTCTCCTCCGGCGAACCTGACTCCATCCACCGCGTCACTGGATCCCCCGTCGGCGTTGCTCTCTTCCTCGTTCTCATTCTCTTTCTCCTCTATAATCGGATTTCCATCTTCGGTGGCGACGATGATTCCGGCGACTTTGAAATTTGTTTGTTACTTACTTACTTACTTACTTAGATCTGTCTTTTCTTGCCATTTGTTCTTCTTCCTTGTAGTTTTTTTTTTTTACTGTGTATTGTTGTGTAAAGCTTTGCTTGATGAACCAAAGAGGAGTGAGTTGTAA

Protein sequence

MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLLFPLSSSFSPSSSSPPIAAPSSPPSSPPANLTPSTASLDPPSALLSSSFSFSFSSIIGFPSSVATMIPATLKFVCYLLTYLLRSVFSCHLFFFLVVFFFYCVLLCKALLDEPKRSEL*
Homology
[Close]
BLAST of MELO3C006671 vs. TAIR10
Match: AT3G06890.1 (AT3G06890.1 unknown protein)

HSP 1 Score: 72.0 bits (175), Expect = 3.9e-13
Identity = 33/46 (71.74%), Postives = 39/46 (84.78%), Query Frame = 1 

Query: 7  GGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLL 53
          G APH I+LAVVVA+V++VPF +GD GEA+TDAI++LLSP GLLLL
Sbjct: 16 GSAPHGIILAVVVALVVLVPFFIGDSGEAITDAIAELLSPVGLLLL 61

[Close]
BLAST of MELO3C006671 vs. NCBI nr
Match: gi|449432860|ref|XP_004134216.1| (PREDICTED: uncharacterized protein LOC101205160 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 2.9e-18
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 

Query: 1  MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLL 53
          MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLL
Sbjct: 1  MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLL 52

[Close]
BLAST of MELO3C006671 vs. NCBI nr
Match: gi|951005158|ref|XP_014508058.1| (PREDICTED: uncharacterized protein LOC106767640 [Vigna radiata var. radiata])

HSP 1 Score: 79.7 bits (195), Expect = 5.3e-12
Identity = 42/61 (68.85%), Postives = 49/61 (80.33%), Query Frame = 1 

Query: 1  MIEERQ---------GGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLL 53
          M+ ERQ         GGAPH ILLAVVVAIV++VPFL+GDQGEA+T+AIS+LLSP GLLL
Sbjct: 1  MVPERQHGGAGGGGGGGAPHGILLAVVVAIVVLVPFLVGDQGEAITEAISELLSPLGLLL 60

The following BLAST results are available for this feature:
BLAST of MELO3C006671 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G06890.13.9e-1371.74 unknown protein[more]
BLAST of MELO3C006671 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449432860|ref|XP_004134216.1|2.9e-18100.00PREDICTED: uncharacterized protein LOC101205160 [Cucumis sativus][more]
gi|951005158|ref|XP_014508058.1|5.3e-1268.85PREDICTED: uncharacterized protein LOC106767640 [Vigna radiata var. radiata][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C006671T1MELO3C006671T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33306FAMILY NOT NAMEDcoord: 2..52
score: 3.0
NoneNo IPR availablePANTHERPTHR33306:SF1SUBFAMILY NOT NAMEDcoord: 2..52
score: 3.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C006671Carg20103Silver-seed gourdcarmeB0828
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C006671Silver-seed gourdcarmeB0074
MELO3C006671Silver-seed gourdcarmeB0610
MELO3C006671Silver-seed gourdcarmeB0701
MELO3C006671Cucumber (Chinese Long) v3cucmeB236
MELO3C006671Watermelon (97103) v2mewmbB434
MELO3C006671Watermelon (97103) v2mewmbB448
MELO3C006671Wax gourdmewgoB521
MELO3C006671Wax gourdmewgoB529
MELO3C006671Melon (DHL92) v3.5.1memeB051
MELO3C006671Melon (DHL92) v3.5.1memeB113
MELO3C006671Cucumber (Gy14) v1cgymeB439
MELO3C006671Cucurbita maxima (Rimu)cmameB001
MELO3C006671Cucurbita maxima (Rimu)cmameB242
MELO3C006671Cucurbita maxima (Rimu)cmameB342
MELO3C006671Cucurbita maxima (Rimu)cmameB763
MELO3C006671Cucurbita maxima (Rimu)cmameB850
MELO3C006671Cucurbita moschata (Rifu)cmomeB230
MELO3C006671Cucurbita moschata (Rifu)cmomeB335
MELO3C006671Cucurbita moschata (Rifu)cmomeB832
MELO3C006671Cucurbita moschata (Rifu)cmomeB755
MELO3C006671Wild cucumber (PI 183967)cpimeB080
MELO3C006671Wild cucumber (PI 183967)cpimeB230
MELO3C006671Cucumber (Chinese Long) v2cumeB236
MELO3C006671Watermelon (Charleston Gray)mewcgB427
MELO3C006671Watermelon (Charleston Gray)mewcgB442
MELO3C006671Watermelon (97103) v1mewmB486
MELO3C006671Watermelon (97103) v1mewmB461
MELO3C006671Cucurbita pepo (Zucchini)cpemeB140
MELO3C006671Cucurbita pepo (Zucchini)cpemeB144
MELO3C006671Cucurbita pepo (Zucchini)cpemeB314
MELO3C006671Cucurbita pepo (Zucchini)cpemeB585
MELO3C006671Cucurbita pepo (Zucchini)cpemeB813
MELO3C006671Bottle gourd (USVL1VR-Ls)lsimeB029
MELO3C006671Bottle gourd (USVL1VR-Ls)lsimeB369
MELO3C006671Cucumber (Gy14) v2cgybmeB070
MELO3C006671Cucumber (Gy14) v2cgybmeB200