MELO3C006671.2.1 (mRNA) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C006671.2.1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	BnaC05g45050D protein
Location	chr06 : 4945325 .. 4945830 (-)
Sequence length	506

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGAAGAACGCCAAGGTGGAGCTCCCCACGCCATTCTCCTGGCCGTGGTTGTTGCCATCGTCATTGTAGTCCCTTTCCTACTCGGCGACCAAGGCGAGGCTCTCACCGACGCCATTTCCGACCTCCTAAGTCCCTTCGGTCTCCTCCTCCTCTTCCCCTTATCCTCCTCCTTCTCACCATCCAGTTCCTCTCCTCCGATCGCGGCTCCTTCGTCTCCGCCATCTTCTCCTCCGGCGAACCTGACTCCATCCACCGCGTCACTGGATCCCCCGTCGGCGTTGCTCTCTTCCTCGTTCTCATTCTCTTTCTCCTCTATAATCGGATTTCCATCTTCGGTGGCGACGATGATTCCGGCGACTTTGAAATTTGTTTGTTACTTACTTACTTACTTACTTAGATCTGTCTTTTCTTGCCATTTGTTCTTCTTCCTTGAGTTTTTTTTTTTTACTGTGTATTGTTGTGTAAAGCTTTGCTTGATGAACCAAAGAGGAGTGAGTTGTAA

mRNA sequence

ATGATTGAAGAACGCCAAGGTGGAGCTCCCCACGCCATTCTCCTGGCCGTGGTTGTTGCCATCGTCATTGTAGTCCCTTTCCTACTCGGCGACCAAGGCGAGGCTCTCACCGACGCCATTTCCGACCTCCTAAGTCCCTTCGGTCTCCTCCTCCTCTTCCCCTTATCCTCCTCCTTCTCACCATCCAGTTCCTCTCCTCCGATCGCGGCTCCTTCGTCTCCGCCATCTTCTCCTCCGGCGAACCTGACTCCATCCACCGCGTCACTGGATCCCCCGTCGGCGTTGCTCTCTTCCTCGTTCTCATTCTCTTTCTCCTCTATAATCGGATTTCCATCTTCGGTGGCGACGATGATTCCGGCGACTTTGAAATTTGTTTGTTACTTACTTACTTACTTACTTAGATCTGTCTTTTCTTGCCATTTGTTCTTCTTCCTTGAGTTTTTTTTTTTTACTGTGTATTGTTGTGTAAAGCTTTGCTTGATGAACCAAAGAGGAGTGAGTTGTAA

Coding sequence (CDS)

ATGATTGAAGAACGCCAAGGTGGAGCTCCCCACGCCATTCTCCTGGCCGTGGTTGTTGCCATCGTCATTGTAGTCCCTTTCCTACTCGGCGACCAAGGCGAGGCTCTCACCGACGCCATTTCCGACCTCCTAAGTCCCTTCGGTCTCCTCCTCCTCTTCCCCTTATCCTCCTCCTTCTCACCATCCAGTTCCTCTCCTCCGATCGCGGCTCCTTCGTCTCCGCCATCTTCTCCTCCGGCGAACCTGACTCCATCCACCGCGTCACTGGATCCCCCGTCGGCGTTGCTCTCTTCCTCGTTCTCATTCTCTTTCTCCTCTATAATCGGATTTCCATCTTCGGTGGCGACGATGATTCCGGCGACTTTGAAATTTGTTTGTTACTTACTTACTTACTTACTTAGATCTGTCTTTTCTTGCCATTTGTTCTTCTTCCTTGAGTTTTTTTTTTTTACTGTGTATTGTTGTGTAAAGCTTTGCTTGATGAACCAAAGAGGAGTGAGTTGT

Protein sequence

MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLLFPLSSSFSPSSSSPPIAAPSSPPSSPPANLTPSTASLDPPSALLSSSFSFSFSSIIGFPSSVATMIPATLKFVCYLLTYLLRSVFSCHLFFFLEFFFFTVYCCVKLCLMNQRGVSC

Homology

[Close]

BLAST of MELO3C006671.2.1 vs. NCBI nr
Match: XP_004134216.1 (PREDICTED: uncharacterized protein LOC101205160 [Cucumis sativus] >XP_008438893.1 PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103483850 [Cucumis melo] >KGN57118.1 hypothetical protein Csa_3G154405 [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 2.1e-17
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLL 53
          MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLL
Sbjct: 1  MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLL 52

[Close]

BLAST of MELO3C006671.2.1 vs. NCBI nr
Match: XP_022137815.1 (uncharacterized protein LOC111009160 [Momordica charantia])

HSP 1 Score: 91.3 bits (225), Expect = 3.4e-15
Identity = 46/52 (88.46%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1  MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLL 53
          MIEERQGGAPH ILLAVVVA+VIVVPF+ GDQGEA+T+AISDLLSPFGLLLL
Sbjct: 1  MIEERQGGAPHGILLAVVVAVVIVVPFVFGDQGEAVTEAISDLLSPFGLLLL 52

[Close]

BLAST of MELO3C006671.2.1 vs. NCBI nr
Match: XP_023528270.1 (uncharacterized protein LOC111791239 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 87.0 bits (214), Expect = 6.5e-14
Identity = 43/52 (82.69%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1  MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLL 53
          MIEERQGGAPH ++LAVVVA VI+VPF LGD GEA+T+AISDLLSPFGLLLL
Sbjct: 1  MIEERQGGAPHGVILAVVVATVILVPFFLGDHGEAITEAISDLLSPFGLLLL 52

[Close]

BLAST of MELO3C006671.2.1 vs. NCBI nr
Match: XP_022979993.1 (uncharacterized protein LOC111479519 [Cucurbita maxima])

HSP 1 Score: 85.9 bits (211), Expect = 1.4e-13
Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 1  MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLL 53
          MIEERQGGAPH ++LAVVVA VI+VPF LGD GE LT+AISDLLSPFGLLLL
Sbjct: 1  MIEERQGGAPHGVILAVVVATVILVPFFLGDHGEPLTEAISDLLSPFGLLLL 52

[Close]

BLAST of MELO3C006671.2.1 vs. NCBI nr
Match: XP_022937994.1 (uncharacterized protein LOC111444213 [Cucurbita moschata] >XP_022973717.1 uncharacterized protein LOC111472294 [Cucurbita maxima] >XP_023522113.1 uncharacterized protein LOC111785989 [Cucurbita pepo subsp. pepo] >XP_023539949.1 uncharacterized protein LOC111800474 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 85.5 bits (210), Expect = 1.9e-13
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1  MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLL 53
          MIEERQGGAPH +LLAVVVAIVIV PFLLGD GEALT+AISDLLSPFGLLLL
Sbjct: 1  MIEERQGGAPHGVLLAVVVAIVIVGPFLLGD-GEALTEAISDLLSPFGLLLL 51

[Close]

BLAST of MELO3C006671.2.1 vs. TAIR10
Match: AT3G06890.1 (unknown protein)

HSP 1 Score: 45.4 bits (106), Expect = 3.9e-05
Identity = 20/27 (74.07%), Postives = 24/27 (88.89%), Query Frame = 0


Query: 26 PFLLGDQGEALTDAISDLLSPFGLLLL 53
          PF +GD GEA+TDAI++LLSP GLLLL
Sbjct: 35 PFFIGDSGEAITDAIAELLSPVGLLLL 61

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BLAST of MELO3C006671.2.1 vs. TrEMBL
Match: tr|A0A1S3AY58|A0A1S3AY58_CUCME (LOW QUALITY PROTEIN: uncharacterized protein LOC103483850 OS=Cucumis melo OX=3656 GN=LOC103483850 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.4e-17
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLL 53
          MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLL
Sbjct: 1  MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLL 52

[Close]

BLAST of MELO3C006671.2.1 vs. TrEMBL
Match: tr|A0A0A0L5U0|A0A0A0L5U0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G154405 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.4e-17
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLL 53
          MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLL
Sbjct: 1  MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLL 52

[Close]

BLAST of MELO3C006671.2.1 vs. TrEMBL
Match: tr|A0A2I4HGL2|A0A2I4HGL2_9ROSI (uncharacterized protein LOC108983149 OS=Juglans regia OX=51240 GN=LOC109017513 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.4e-12
Identity = 42/52 (80.77%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1  MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLL 53
          MIEERQGGAPH ILLAVVVA+V+VVP L+GDQGEA+T AI++LLSP GLLLL
Sbjct: 1  MIEERQGGAPHGILLAVVVALVLVVPSLVGDQGEAITAAIAELLSPVGLLLL 52

[Close]

BLAST of MELO3C006671.2.1 vs. TrEMBL
Match: tr|I1KMX8|I1KMX8_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100778375 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.1e-12
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1  MIEERQ--GGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLL 53
          MI ERQ  GGAPH ILLA+VVAIV++VPF LGDQG+A+T A+SDLLSPFGLLLL
Sbjct: 1  MIPERQQGGGAPHGILLALVVAIVLIVPFFLGDQGQAITQALSDLLSPFGLLLL 54

[Close]

BLAST of MELO3C006671.2.1 vs. TrEMBL
Match: tr|A0A2P4H0A7|A0A2P4H0A7_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_31144 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 4.0e-12
Identity = 39/52 (75.00%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 1  MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLL 53
          MIEERQ GAPH +LLAVVVA+++ VP L+GDQGEA+T+AIS+LLSP GLLLL
Sbjct: 1  MIEERQAGAPHGVLLAVVVAMILAVPLLVGDQGEAITEAISELLSPVGLLLL 52

The following BLAST results are available for this feature:

BLAST of MELO3C006671.2.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134216.1	2.1e-17	100.00	PREDICTED: uncharacterized protein LOC101205160 [Cucumis sativus] >XP_008438893....	[more]
XP_022137815.1	3.4e-15	88.46	uncharacterized protein LOC111009160 [Momordica charantia]	[more]
XP_023528270.1	6.5e-14	82.69	uncharacterized protein LOC111791239 [Cucurbita pepo subsp. pepo]	[more]
XP_022979993.1	1.4e-13	82.69	uncharacterized protein LOC111479519 [Cucurbita maxima]	[more]
XP_022937994.1	1.9e-13	90.38	uncharacterized protein LOC111444213 [Cucurbita moschata] >XP_022973717.1 unchar...	[more]

BLAST of MELO3C006671.2.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G06890.1	3.9e-05	74.07	unknown protein	[more]

BLAST of MELO3C006671.2.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C006671.2.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AY58\|A0A1S3AY58_CUCME	1.4e-17	100.00	LOW QUALITY PROTEIN: uncharacterized protein LOC103483850 OS=Cucumis melo OX=365...	[more]
tr\|A0A0A0L5U0\|A0A0A0L5U0_CUCSA	1.4e-17	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G154405 PE=4 SV=1	[more]
tr\|A0A2I4HGL2\|A0A2I4HGL2_9ROSI	1.4e-12	80.77	uncharacterized protein LOC108983149 OS=Juglans regia OX=51240 GN=LOC109017513 P...	[more]
tr\|I1KMX8\|I1KMX8_SOYBN	3.1e-12	77.78	Uncharacterized protein OS=Glycine max OX=3847 GN=100778375 PE=4 SV=1	[more]
tr\|A0A2P4H0A7\|A0A2P4H0A7_QUESU	4.0e-12	75.00	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_31144 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C006671.2	MELO3C006671.2	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C006671.2.1.CDS.1	MELO3C006671.2.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C006671.2.1.three_prime_UTR.1	MELO3C006671.2.1.three_prime_UTR.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C006671.2.1.exon.1	MELO3C006671.2.1.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C006671.2.1	MELO3C006671.2.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..81
None	No IPR available	PANTHER	PTHR33306	FAMILY NOT NAMED	coord: 4..52
None	No IPR available	PANTHER	PTHR33306:SF1	SUBFAMILY NOT NAMED	coord: 4..52