MELO3C006671.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C006671.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	BnaC05g45050D protein
Location	chr06 : 4945325 .. 4945830 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGAAGAACGCCAAGGTGGAGCTCCCCACGCCATTCTCCTGGCCGTGGTTGTTGCCATCGTCATTGTAGTCCCTTTCCTACTCGGCGACCAAGGCGAGGCTCTCACCGACGCCATTTCCGACCTCCTAAGTCCCTTCGGTCTCCTCCTCCTCTTCCCCTTATCCTCCTCCTTCTCACCATCCAGTTCCTCTCCTCCGATCGCGGCTCCTTCGTCTCCGCCATCTTCTCCTCCGGCGAACCTGACTCCATCCACCGCGTCACTGGATCCCCCGTCGGCGTTGCTCTCTTCCTCGTTCTCATTCTCTTTCTCCTCTATAATCGGATTTCCATCTTCGGTGGCGACGATGATTCCGGCGACTTTGAAATTTGTTTGTTACTTACTTACTTACTTACTTAGATCTGTCTTTTCTTGCCATTTGTTCTTCTTCCTTGAGTTTTTTTTTTTTACTGTGTATTGTTGTGTAAAGCTTTGCTTGATGAACCAAAGAGGAGTGAGTTGTAA

mRNA sequence

ATGATTGAAGAACGCCAAGGTGGAGCTCCCCACGCCATTCTCCTGGCCGTGGTTGTTGCCATCGTCATTGTAGTCCCTTTCCTACTCGGCGACCAAGGCGAGGCTCTCACCGACGCCATTTCCGACCTCCTAAGTCCCTTCGGTCTCCTCCTCCTCTTCCCCTTATCCTCCTCCTTCTCACCATCCAGTTCCTCTCCTCCGATCGCGGCTCCTTCGTCTCCGCCATCTTCTCCTCCGGCGAACCTGACTCCATCCACCGCGTCACTGGATCCCCCGTCGGCGTTGCTCTCTTCCTCGTTCTCATTCTCTTTCTCCTCTATAATCGGATTTCCATCTTCGGTGGCGACGATGATTCCGGCGACTTTGAAATTTGTTTGTTACTTACTTACTTACTTACTTAGATCTGTCTTTTCTTGCCATTTGTTCTTCTTCCTTGAGTTTTTTTTTTTTACTGTGTATTGTTGTGTAAAGCTTTGCTTGATGAACCAAAGAGGAGTGAGTTGTAA

Coding sequence (CDS)

ATGATTGAAGAACGCCAAGGTGGAGCTCCCCACGCCATTCTCCTGGCCGTGGTTGTTGCCATCGTCATTGTAGTCCCTTTCCTACTCGGCGACCAAGGCGAGGCTCTCACCGACGCCATTTCCGACCTCCTAAGTCCCTTCGGTCTCCTCCTCCTCTTCCCCTTATCCTCCTCCTTCTCACCATCCAGTTCCTCTCCTCCGATCGCGGCTCCTTCGTCTCCGCCATCTTCTCCTCCGGCGAACCTGACTCCATCCACCGCGTCACTGGATCCCCCGTCGGCGTTGCTCTCTTCCTCGTTCTCATTCTCTTTCTCCTCTATAATCGGATTTCCATCTTCGGTGGCGACGATGATTCCGGCGACTTTGAAATTTGTTTGTTACTTACTTACTTACTTACTTAGATCTGTCTTTTCTTGCCATTTGTTCTTCTTCCTTGAGTTTTTTTTTTTTACTGTGTATTGTTGTGTAAAGCTTTGCTTGATGAACCAAAGAGGAGTGAGTTGT

Protein sequence

MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLLFPLSSSFSPSSSSPPIAAPSSPPSSPPANLTPSTASLDPPSALLSSSFSFSFSSIIGFPSSVATMIPATLKFVCYLLTYLLRSVFSCHLFFFLEFFFFTVYCCVKLCLMNQRGVSC

Homology

[Close]

BLAST of MELO3C006671.2 vs. NCBI nr
Match: XP_004134216.1 (PREDICTED: uncharacterized protein LOC101205160 [Cucumis sativus] >XP_008438893.1 PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103483850 [Cucumis melo] >KGN57118.1 hypothetical protein Csa_3G154405 [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 2.1e-17
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLL 53
          MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLL
Sbjct: 1  MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLL 52

[Close]

BLAST of MELO3C006671.2 vs. NCBI nr
Match: XP_022137815.1 (uncharacterized protein LOC111009160 [Momordica charantia])

HSP 1 Score: 91.3 bits (225), Expect = 3.4e-15
Identity = 46/52 (88.46%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1  MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLL 53
          MIEERQGGAPH ILLAVVVA+VIVVPF+ GDQGEA+T+AISDLLSPFGLLLL
Sbjct: 1  MIEERQGGAPHGILLAVVVAVVIVVPFVFGDQGEAVTEAISDLLSPFGLLLL 52

[Close]

BLAST of MELO3C006671.2 vs. NCBI nr
Match: XP_023528270.1 (uncharacterized protein LOC111791239 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 87.0 bits (214), Expect = 6.5e-14
Identity = 43/52 (82.69%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1  MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLL 53
          MIEERQGGAPH ++LAVVVA VI+VPF LGD GEA+T+AISDLLSPFGLLLL
Sbjct: 1  MIEERQGGAPHGVILAVVVATVILVPFFLGDHGEAITEAISDLLSPFGLLLL 52

[Close]

BLAST of MELO3C006671.2 vs. NCBI nr
Match: XP_022979993.1 (uncharacterized protein LOC111479519 [Cucurbita maxima])

HSP 1 Score: 85.9 bits (211), Expect = 1.4e-13
Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 1  MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLL 53
          MIEERQGGAPH ++LAVVVA VI+VPF LGD GE LT+AISDLLSPFGLLLL
Sbjct: 1  MIEERQGGAPHGVILAVVVATVILVPFFLGDHGEPLTEAISDLLSPFGLLLL 52

[Close]

BLAST of MELO3C006671.2 vs. NCBI nr
Match: XP_022937994.1 (uncharacterized protein LOC111444213 [Cucurbita moschata] >XP_022973717.1 uncharacterized protein LOC111472294 [Cucurbita maxima] >XP_023522113.1 uncharacterized protein LOC111785989 [Cucurbita pepo subsp. pepo] >XP_023539949.1 uncharacterized protein LOC111800474 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 85.5 bits (210), Expect = 1.9e-13
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1  MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLL 53
          MIEERQGGAPH +LLAVVVAIVIV PFLLGD GEALT+AISDLLSPFGLLLL
Sbjct: 1  MIEERQGGAPHGVLLAVVVAIVIVGPFLLGD-GEALTEAISDLLSPFGLLLL 51

[Close]

BLAST of MELO3C006671.2 vs. TAIR10
Match: AT3G06890.1 (unknown protein)

HSP 1 Score: 45.4 bits (106), Expect = 3.9e-05
Identity = 20/27 (74.07%), Postives = 24/27 (88.89%), Query Frame = 0


Query: 26 PFLLGDQGEALTDAISDLLSPFGLLLL 53
          PF +GD GEA+TDAI++LLSP GLLLL
Sbjct: 35 PFFIGDSGEAITDAIAELLSPVGLLLL 61

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BLAST of MELO3C006671.2 vs. TrEMBL
Match: tr|A0A1S3AY58|A0A1S3AY58_CUCME (LOW QUALITY PROTEIN: uncharacterized protein LOC103483850 OS=Cucumis melo OX=3656 GN=LOC103483850 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.4e-17
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLL 53
          MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLL
Sbjct: 1  MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLL 52

[Close]

BLAST of MELO3C006671.2 vs. TrEMBL
Match: tr|A0A0A0L5U0|A0A0A0L5U0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G154405 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.4e-17
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLL 53
          MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLL
Sbjct: 1  MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLL 52

[Close]

BLAST of MELO3C006671.2 vs. TrEMBL
Match: tr|A0A2I4HGL2|A0A2I4HGL2_9ROSI (uncharacterized protein LOC108983149 OS=Juglans regia OX=51240 GN=LOC109017513 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.4e-12
Identity = 42/52 (80.77%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1  MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLL 53
          MIEERQGGAPH ILLAVVVA+V+VVP L+GDQGEA+T AI++LLSP GLLLL
Sbjct: 1  MIEERQGGAPHGILLAVVVALVLVVPSLVGDQGEAITAAIAELLSPVGLLLL 52

[Close]

BLAST of MELO3C006671.2 vs. TrEMBL
Match: tr|I1KMX8|I1KMX8_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100778375 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.1e-12
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1  MIEERQ--GGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLL 53
          MI ERQ  GGAPH ILLA+VVAIV++VPF LGDQG+A+T A+SDLLSPFGLLLL
Sbjct: 1  MIPERQQGGGAPHGILLALVVAIVLIVPFFLGDQGQAITQALSDLLSPFGLLLL 54

[Close]

BLAST of MELO3C006671.2 vs. TrEMBL
Match: tr|A0A2P4H0A7|A0A2P4H0A7_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_31144 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 4.0e-12
Identity = 39/52 (75.00%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 1  MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLL 53
          MIEERQ GAPH +LLAVVVA+++ VP L+GDQGEA+T+AIS+LLSP GLLLL
Sbjct: 1  MIEERQAGAPHGVLLAVVVAMILAVPLLVGDQGEAITEAISELLSPVGLLLL 52

The following BLAST results are available for this feature:

BLAST of MELO3C006671.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134216.1	2.1e-17	100.00	PREDICTED: uncharacterized protein LOC101205160 [Cucumis sativus] >XP_008438893....	[more]
XP_022137815.1	3.4e-15	88.46	uncharacterized protein LOC111009160 [Momordica charantia]	[more]
XP_023528270.1	6.5e-14	82.69	uncharacterized protein LOC111791239 [Cucurbita pepo subsp. pepo]	[more]
XP_022979993.1	1.4e-13	82.69	uncharacterized protein LOC111479519 [Cucurbita maxima]	[more]
XP_022937994.1	1.9e-13	90.38	uncharacterized protein LOC111444213 [Cucurbita moschata] >XP_022973717.1 unchar...	[more]

BLAST of MELO3C006671.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G06890.1	3.9e-05	74.07	unknown protein	[more]

BLAST of MELO3C006671.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C006671.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AY58\|A0A1S3AY58_CUCME	1.4e-17	100.00	LOW QUALITY PROTEIN: uncharacterized protein LOC103483850 OS=Cucumis melo OX=365...	[more]
tr\|A0A0A0L5U0\|A0A0A0L5U0_CUCSA	1.4e-17	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G154405 PE=4 SV=1	[more]
tr\|A0A2I4HGL2\|A0A2I4HGL2_9ROSI	1.4e-12	80.77	uncharacterized protein LOC108983149 OS=Juglans regia OX=51240 GN=LOC109017513 P...	[more]
tr\|I1KMX8\|I1KMX8_SOYBN	3.1e-12	77.78	Uncharacterized protein OS=Glycine max OX=3847 GN=100778375 PE=4 SV=1	[more]
tr\|A0A2P4H0A7\|A0A2P4H0A7_QUESU	4.0e-12	75.00	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_31144 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C006671.2.1	MELO3C006671.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..81
None	No IPR available	PANTHER	PTHR33306	FAMILY NOT NAMED	coord: 4..52
None	No IPR available	PANTHER	PTHR33306:SF1	SUBFAMILY NOT NAMED	coord: 4..52

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C006671.2	Carg20103	Silver-seed gourd	carmedB0840

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C006671.2	Silver-seed gourd	carmedB0075
MELO3C006671.2	Silver-seed gourd	carmedB0616
MELO3C006671.2	Silver-seed gourd	carmedB0714
MELO3C006671.2	Cucumber (Chinese Long) v3	cucmedB079
MELO3C006671.2	Cucumber (Chinese Long) v3	cucmedB230
MELO3C006671.2	Watermelon (97103) v2	medwmbB423
MELO3C006671.2	Watermelon (97103) v2	medwmbB442
MELO3C006671.2	Wax gourd	medwgoB523
MELO3C006671.2	Wax gourd	medwgoB530
MELO3C006671.2	Cucumber (Gy14) v2	cgybmedB201
MELO3C006671.2	Cucumber (Gy14) v1	cgymedB432
MELO3C006671.2	Cucurbita maxima (Rimu)	cmamedB001
MELO3C006671.2	Cucurbita maxima (Rimu)	cmamedB273
MELO3C006671.2	Cucurbita maxima (Rimu)	cmamedB398
MELO3C006671.2	Cucurbita maxima (Rimu)	cmamedB400
MELO3C006671.2	Cucurbita maxima (Rimu)	cmamedB863
MELO3C006671.2	Cucurbita maxima (Rimu)	cmamedB950
MELO3C006671.2	Cucurbita moschata (Rifu)	cmomedB260
MELO3C006671.2	Cucurbita moschata (Rifu)	cmomedB385
MELO3C006671.2	Cucurbita moschata (Rifu)	cmomedB857
MELO3C006671.2	Cucurbita moschata (Rifu)	cmomedB940
MELO3C006671.2	Cucurbita pepo (Zucchini)	cpemedB170
MELO3C006671.2	Cucurbita pepo (Zucchini)	cpemedB368
MELO3C006671.2	Cucurbita pepo (Zucchini)	cpemedB693
MELO3C006671.2	Cucurbita pepo (Zucchini)	cpemedB951
MELO3C006671.2	Wild cucumber (PI 183967)	cpimedB224
MELO3C006671.2	Cucumber (Chinese Long) v2	cumedB223
MELO3C006671.2	Melon (DHL92) v3.6.1	medmedB049
MELO3C006671.2	Melon (DHL92) v3.6.1	medmedB112
MELO3C006671.2	Bottle gourd (USVL1VR-Ls)	lsimedB032
MELO3C006671.2	Bottle gourd (USVL1VR-Ls)	lsimedB385
MELO3C006671.2	Watermelon (Charleston Gray)	medwcgB416
MELO3C006671.2	Watermelon (Charleston Gray)	medwcgB437
MELO3C006671.2	Watermelon (97103) v1	medwmB447
MELO3C006671.2	Watermelon (97103) v1	medwmB474