MELO3C006448T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C006448T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	DNA/RNA helicase protein
Location	chr6 : 3290019 .. 3291391 (+)
Sequence length	1079

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCCGACTGCACCGACTCGAGCATATGTCGAAGAGGTTGTTGATTGCATTCGACGAGGGGAAAACACGGAGTGTCCAATATGTATGGAATTTGCTGACGATGCAGTGCTCACCCCATGTGCTCACAGGATGTGTAGGGAATGTCTCCTCTCAAGCTGGAGGACCCCCACATGTGGGCTCTGCCCAATTTGTAGGCAAATGCTGAGGAAAACTGACCTCATAACATGTCCATCAGAAAACCCTTTCCGTGTGGATGTTGAGAAGAACTGGAAGGAGTCTTCAAAAGTATCAAAACTGCTTGAATGCTTGGAGCAGATTAATCAGTCGGGTTCTGGTGAAAAGAGCATTGTTTTTAGTCAGTGGACTACATTTTTTGATCTCTTGGAGATTCCCTTGAAGAGGAAAAGAATTGGATTCTTCAGATTTGATGGGAAGCTGTCGCAGAAACATAGGGAAAGAGTTCTAAAGGAGTTCAGTGAAAGCAAGGAGATAAAGGTATATTATGAAATTTACTACTCTGTTTTAAGCTTTTTTTTTTATTTCAAATTTCCAACTCTATTCCCTCTTCCAATTTTAGGTGATGCTGATCTCTCTGAAAGCTGGTGGGGTTGGATTGAATCTAACCGCGGCTTCAAATGTCTTCATAATGGTAAATCATCTTGGACTCTAGTTATTTTCTTTTCCTCAGTCAATTGCATATTAAGTTGGTATCATGATCTTAGGATCCATGGTGGAATCCTGCGGTTGAGGAACAAGCAATCATGAGGATACATCGTATTGGTCAGAAGAGGACAGTCCGTGTCAGGAGATTCATTGTCAAGGTTACACAAATCCCTCTTTCTTTCTTCTGTTGTATTTATTGTATATAAAAAATTGGACGTCATAAAAGAAACCAAATCAAAGGTCAAAAGTCAAAACTTGGTACTTTTGTTTAAAATGTGAATTTGACCACGTGGACAGGACACAGTGGAGGAACGCATGCAACAAGTTCAAGCCAGAAAGCAGCGGATGATCTCCGGTGCACTCACTGACGAGGAAGTTCGAACGGCCAGAATTGAAGAACTCAAGATGCTATTTAGATGAACATCACTTTGTTCATTTATTTTGGTTTTTATTTAATGAAATTACTCGTAAATATTATATTATTGCGATGGGTCTCTCTGTAAAAAGCCCCAATTTTTTGTAAAGTCCGCATCAGGTGAATGTCTTAGCTTAGCTGATGTTAATTTAGAAAGCAAAAGGCCTCATTTTGTTGAAAGTCTTATTTTGATAAAGACATACAAATCGAATATTCCTATTTTTGAAGAAAGTGAGAATATTTAGCACAAACAAAATAATATTAAGTTTGGAGATGAGACAGCGATTGGCCA

mRNA sequence

ATGGAGCCGACTGCACCGACTCGAGCATATGTCGAAGAGGTTGTTGATTGCATTCGACGAGGGGAAAACACGGAGTGTCCAATATGTATGGAATTTGCTGACGATGCAGTGCTCACCCCATGTGCTCACAGGATGTGTAGGGAATGTCTCCTCTCAAGCTGGAGGACCCCCACATGTGGGCTCTGCCCAATTTGTAGGCAAATGCTGAGGAAAACTGACCTCATAACATGTCCATCAGAAAACCCTTTCCGTGTGGATGTTGAGAAGAACTGGAAGGAGTCTTCAAAAGTATCAAAACTGCTTGAATGCTTGGAGCAGATTAATCAGTCGGGTTCTGGTGAAAAGAGCATTGTTTTTAGTCAGTGGACTACATTTTTTGATCTCTTGGAGATTCCCTTGAAGAGGAAAAGAATTGGATTCTTCAGATTTGATGGGAAGCTGTCGCAGAAACATAGGGAAAGAGTTCTAAAGGAGTTCAGTGAAAGCAAGGAGATAAAGGTGATGCTGATCTCTCTGAAAGCTGGTGGGGTTGGATTGAATCTAACCGCGGCTTCAAATGTCTTCATAATGGATCCATGGTGGAATCCTGCGGTTGAGGAACAAGCAATCATGAGGATACATCGTATTGGTCAGAAGAGGACAGTCCGTGTCAGGAGATTCATTGTCAAGGACACAGTGGAGGAACGCATGCAACAAGTTCAAGCCAGAAAGCAGCGGATGATCTCCGGTGCACTCACTGACGAGGAAGTTCGAACGGCCAGAATTGAAGAACTCAAGATGCTATTTAGATGAACATCACTTTGTTCATTTATTTTGGTTTTTATTTAATGAAATTACTCGTAAATATTATATTATTGCGATGGGTCTCTCTGTAAAAAGCCCCAATTTTTTGTAAAGTCCGCATCAGGTGAATGTCTTAGCTTAGCTGATGTTAATTTAGAAAGCAAAAGGCCTCATTTTGTTGAAAGTCTTATTTTGATAAAGACATACAAATCGAATATTCCTATTTTTGAAGAAAGTGAGAATATTTAGCACAAACAAAATAATATTAAGTTTGGAGATGAGACAGCGATTGGCCA

Coding sequence (CDS)

ATGGAGCCGACTGCACCGACTCGAGCATATGTCGAAGAGGTTGTTGATTGCATTCGACGAGGGGAAAACACGGAGTGTCCAATATGTATGGAATTTGCTGACGATGCAGTGCTCACCCCATGTGCTCACAGGATGTGTAGGGAATGTCTCCTCTCAAGCTGGAGGACCCCCACATGTGGGCTCTGCCCAATTTGTAGGCAAATGCTGAGGAAAACTGACCTCATAACATGTCCATCAGAAAACCCTTTCCGTGTGGATGTTGAGAAGAACTGGAAGGAGTCTTCAAAAGTATCAAAACTGCTTGAATGCTTGGAGCAGATTAATCAGTCGGGTTCTGGTGAAAAGAGCATTGTTTTTAGTCAGTGGACTACATTTTTTGATCTCTTGGAGATTCCCTTGAAGAGGAAAAGAATTGGATTCTTCAGATTTGATGGGAAGCTGTCGCAGAAACATAGGGAAAGAGTTCTAAAGGAGTTCAGTGAAAGCAAGGAGATAAAGGTGATGCTGATCTCTCTGAAAGCTGGTGGGGTTGGATTGAATCTAACCGCGGCTTCAAATGTCTTCATAATGGATCCATGGTGGAATCCTGCGGTTGAGGAACAAGCAATCATGAGGATACATCGTATTGGTCAGAAGAGGACAGTCCGTGTCAGGAGATTCATTGTCAAGGACACAGTGGAGGAACGCATGCAACAAGTTCAAGCCAGAAAGCAGCGGATGATCTCCGGTGCACTCACTGACGAGGAAGTTCGAACGGCCAGAATTGAAGAACTCAAGATGCTATTTAGATGA

Protein sequence

MEPTAPTRAYVEEVVDCIRRGENTECPICMEFADDAVLTPCAHRMCRECLLSSWRTPTCGLCPICRQMLRKTDLITCPSENPFRVDVEKNWKESSKVSKLLECLEQINQSGSGEKSIVFSQWTTFFDLLEIPLKRKRIGFFRFDGKLSQKHRERVLKEFSESKEIKVMLISLKAGGVGLNLTAASNVFIMDPWWNPAVEEQAIMRIHRIGQKRTVRVRRFIVKDTVEERMQQVQARKQRMISGALTDEEVRTARIEELKMLFR*

Homology

[Close]

BLAST of MELO3C006448T1 vs. Swiss-Prot
Match: SM3L3_ARATH (Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 OS=Arabidopsis thaliana GN=At5g43530 PE=3 SV=1)

HSP 1 Score: 426.0 bits (1094), Expect = 3.0e-118
Identity = 202/259 (77.99%), Postives = 237/259 (91.51%), Query Frame = 1


Query: 5    APTRAYVEEVVDCIRRGENTECPICMEFADDAVLTPCAHRMCRECLLSSWRTPTCGLCPI 64
            AP+RAY+EEV+  +R G + ECPIC+E ADD VLTPCAHRMCRECLL+SWR+P+CGLCPI
Sbjct: 1019 APSRAYIEEVIQDLRDGNSKECPICLESADDPVLTPCAHRMCRECLLTSWRSPSCGLCPI 1078

Query: 65   CRQMLRKTDLITCPSENPFRVDVEKNWKESSKVSKLLECLEQINQSGSGEKSIVFSQWTT 124
            CR +L++T+LI+CP+++ FRVDV KNWKESSKVS+LL+CLE+I +SGSGEKSIVFSQWT+
Sbjct: 1079 CRTILKRTELISCPTDSIFRVDVVKNWKESSKVSELLKCLEKIKKSGSGEKSIVFSQWTS 1138

Query: 125  FFDLLEIPLKRKRIGFFRFDGKLSQKHRERVLKEFSESKEIKVMLISLKAGGVGLNLTAA 184
            F DLLEIPL+R+   F RFDGKL+QK RE+VLKEF+E+K+  ++L+SLKAGGVGLNLTAA
Sbjct: 1139 FLDLLEIPLRRRGFEFLRFDGKLAQKGREKVLKEFNETKQKTILLMSLKAGGVGLNLTAA 1198

Query: 185  SNVFIMDPWWNPAVEEQAIMRIHRIGQKRTVRVRRFIVKDTVEERMQQVQARKQRMISGA 244
            S+VF+MDPWWNPAVEEQAIMRIHRIGQKRTV VRRFIVKDTVEERMQQVQARKQRMI+GA
Sbjct: 1199 SSVFLMDPWWNPAVEEQAIMRIHRIGQKRTVFVRRFIVKDTVEERMQQVQARKQRMIAGA 1258

Query: 245  LTDEEVRTARIEELKMLFR 264
            LTDEEVR+AR+EELKMLFR
Sbjct: 1259 LTDEEVRSARLEELKMLFR 1277

[Close]

BLAST of MELO3C006448T1 vs. Swiss-Prot
Match: SM3L2_ARATH (Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 OS=Arabidopsis thaliana GN=At5g22750 PE=2 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 3.9e-102
Identity = 180/257 (70.04%), Postives = 212/257 (82.49%), Query Frame = 1


Query: 6    PTRAYVEEVVDCIRRGENTECPICMEFADDAVLTPCAHRMCRECLLSSWRTPTCGLCPIC 65
            P+ A+V+EVV+ +R+GE  ECPIC+E  +DAVLTPCAHR+CRECLL+SWR  T GLCP+C
Sbjct: 774  PSEAFVQEVVEELRKGEQGECPICLEALEDAVLTPCAHRLCRECLLASWRNSTSGLCPVC 833

Query: 66   RQMLRKTDLITCPSENPFRVDVEKNWKESSKVSKLLECLEQINQSGSGEKSIVFSQWTTF 125
            R  + K +LIT P+E+ F+VDVEKNW ESSK++ LLE LE +  SGS  KSI+FSQWT F
Sbjct: 834  RNTVSKQELITAPTESRFQVDVEKNWVESSKITALLEELEGLRSSGS--KSILFSQWTAF 893

Query: 126  FDLLEIPLKRKRIGFFRFDGKLSQKHRERVLKEFSESKEIKVMLISLKAGGVGLNLTAAS 185
             DLL+IPL R    F R DG LSQ+ RE+VLKEFSE   I V+L+SLKAGGVG+NLTAAS
Sbjct: 894  LDLLQIPLSRNNFSFVRLDGTLSQQQREKVLKEFSEDGSILVLLMSLKAGGVGINLTAAS 953

Query: 186  NVFIMDPWWNPAVEEQAIMRIHRIGQKRTVRVRRFIVKDTVEERMQQVQARKQRMISGAL 245
            N F+MDPWWNPAVEEQA+MRIHRIGQ + V++RRFIVK TVEERM+ VQARKQRMISGAL
Sbjct: 954  NAFVMDPWWNPAVEEQAVMRIHRIGQTKEVKIRRFIVKGTVEERMEAVQARKQRMISGAL 1013

Query: 246  TDEEVRTARIEELKMLF 263
            TD+EVR+ARIEELKMLF
Sbjct: 1014 TDQEVRSARIEELKMLF 1028

[Close]

BLAST of MELO3C006448T1 vs. Swiss-Prot
Match: HLTF_HUMAN (Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1 SV=2)

HSP 1 Score: 193.4 bits (490), Expect = 3.2e-48
Identity = 103/252 (40.87%), Postives = 151/252 (59.92%), Query Frame = 1


Query: 21   GENTECPICMEFADDAVLTPCAHRMCRECLLSSWRTPTC-GLCPICRQMLRKTDLITCPS 80
            G + EC IC++     V+T CAH  C+ C+    +       CP+CR  + + +L+ CP 
Sbjct: 755  GSDEECAICLDSLTVPVITHCAHVFCKPCICQVIQNEQPHAKCPLCRNDIHEDNLLECPP 814

Query: 81   ENPFRVDVEKN---WKESSKVSKLLECLEQINQSGSGEKSIVFSQWTTFFDLLEIPLKRK 140
            E   R   +K+   W  SSK++ L+  L  + +     KS+V SQ+TTF  L+EIPLK  
Sbjct: 815  EELARDSEKKSDMEWTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKAS 874

Query: 141  RIGFFRFDGKLSQKHRERVLKEF--SESKEIKVMLISLKAGGVGLNLTAASNVFIMDPWW 200
               F R DG ++QK R   ++ F  +E+    +ML+SLKAGGVGLNL+AAS VF+MDP W
Sbjct: 875  GFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAW 934

Query: 201  NPAVEEQAIMRIHRIGQKRTVRVRRFIVKDTVEERMQQVQARKQRMISGAL-----TDEE 260
            NPA E+Q   R HR+GQK+ V + +FIVKD+VEE M ++Q +K+ + +GA        +E
Sbjct: 935  NPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLKIQNKKRELAAGAFGTKKPNADE 994

Query: 261  VRTARIEELKML 262
            ++ A+I E++ L
Sbjct: 995  MKQAKINEIRTL 1006

[Close]

BLAST of MELO3C006448T1 vs. Swiss-Prot
Match: HLTF_MOUSE (Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 6.1e-47
Identity = 106/271 (39.11%), Postives = 155/271 (57.20%), Query Frame = 1


Query: 3    PTAPTRAYVEEVVDCIRRGENTECPICMEFADDAVLTPCAHRMCRECLLSSWRTPTC-GL 62
            P    +  +E++   +  G + EC IC++     V+T CAH  C+ C+     +      
Sbjct: 731  PEELRKMLIEKMKIILSSGSDEECAICLDSLTFPVITHCAHVFCKPCICQVIHSEQPHAK 790

Query: 63   CPICRQMLRKTDLITCPSENPFRVDVEKN----WKESSKVSKLLECLEQINQSGSGEKSI 122
            CP+CR  +   +L+ CP E     D +K     WK SSK++ L+  L ++       KS+
Sbjct: 791  CPLCRNEIHGDNLLECPPEE-LACDSDKESSMEWKSSSKINALMHALIELRTKDPNIKSL 850

Query: 123  VFSQWTTFFDLLEIPLKRKRIGFFRFDGKLSQKHRERVLKEF--SESKEIKVMLISLKAG 182
            V SQ+TTF  L+E PLK     F R DG ++QK R   ++ F  +E+    +ML+SLKAG
Sbjct: 851  VVSQFTTFLSLIETPLKASGFVFTRLDGSMAQKKRVESIQRFQNTEAGSPTIMLLSLKAG 910

Query: 183  GVGLNLTAASNVFIMDPWWNPAVEEQAIMRIHRIGQKRTVRVRRFIVKDTVEERMQQVQA 242
            GVGLNL AAS VF+MDP WNPA E+Q   R HR+GQK+ V + +FIVKD+VEE M ++Q 
Sbjct: 911  GVGLNLCAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLKIQN 970

Query: 243  RKQRMISGAL----TD-EEVRTARIEELKML 262
             K+ + +GA     TD  +++ A+I E++ L
Sbjct: 971  TKRDLAAGAFGTKKTDANDMKQAKINEIRTL 1000

[Close]

BLAST of MELO3C006448T1 vs. Swiss-Prot
Match: RAD5_GIBZE (DNA repair protein RAD5 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=RAD5 PE=3 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.0e-46
Identity = 111/262 (42.37%), Postives = 156/262 (59.54%), Query Frame = 1


Query: 18   IRRGENTECPICMEFA-DDAVLTPCAHRMCRECLLSSWRTPT----CGLCPICRQMLRKT 77
            IR     ECP+C E   +D  +T C H  C++CLL   +  T       C  CR+ + K 
Sbjct: 892  IRDEAENECPLCFEEPMNDQTVTGCWHSACKKCLLDYIKHQTDKAEVPRCFSCREPINKR 951

Query: 78   DLITCP---------SENPFRVDVEKNW--KESSKVSKLLECLEQINQSGSGEKSIVFSQ 137
            DL             S+ P R+ +++      S+KV  L+  L  + +     KS+VFSQ
Sbjct: 952  DLFEVVRHDDDSDMMSKKP-RISLQRVGVNASSAKVVALMSELRALRREHPKMKSVVFSQ 1011

Query: 138  WTTFFDLLEIPLKRKRIGFFRFDGKLSQKHRERVLKEFSESKEIKVMLISLKAGGVGLNL 197
            +T+F  L+E  L R  I F R DG ++QK R  VL EF+E K   ++L+SL+AGGVGLNL
Sbjct: 1012 FTSFLSLIEPALTRANIKFLRLDGSMAQKARAAVLNEFTEKKGFTILLLSLRAGGVGLNL 1071

Query: 198  TAASNVFIMDPWWNPAVEEQAIMRIHRIGQKRTVRVRRFIVKDTVEERMQQVQARKQRMI 257
            T+A  VF+MDPWW+ AVE QAI R+HR+GQ+  V+V+RF+VK++VEERM +VQ RK+ + 
Sbjct: 1072 TSAGRVFMMDPWWSFAVEAQAIDRVHRMGQEAEVQVKRFVVKESVEERMLKVQERKKFIA 1131

Query: 258  S--GALTDEEVRTARIEELKML 262
            +  G + DEE +  RIE++K L
Sbjct: 1132 TSLGMMNDEEKKLQRIEDIKEL 1152

[Close]

BLAST of MELO3C006448T1 vs. TrEMBL
Match: A0A0A0L9Y2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G141820 PE=4 SV=1)

HSP 1 Score: 510.8 bits (1314), Expect = 1.0e-141
Identity = 250/263 (95.06%), Postives = 257/263 (97.72%), Query Frame = 1


Query: 1    MEPTAPTRAYVEEVVDCIRRGENTECPICMEFADDAVLTPCAHRMCRECLLSSWRTPTCG 60
            ME  APTRAYVE+VV+CIRRGENTECPIC+EFADDAVLTPCAHRMCRECLLSSWRTPTCG
Sbjct: 851  MEQVAPTRAYVEDVVECIRRGENTECPICLEFADDAVLTPCAHRMCRECLLSSWRTPTCG 910

Query: 61   LCPICRQMLRKTDLITCPSENPFRVDVEKNWKESSKVSKLLECLEQINQSGSGEKSIVFS 120
             CPICRQMLRKT+LITCPSE+PFRVDVEKNWKESSKVSKLLECLE+IN  GSGEKSIVFS
Sbjct: 911  FCPICRQMLRKTELITCPSESPFRVDVEKNWKESSKVSKLLECLERINLLGSGEKSIVFS 970

Query: 121  QWTTFFDLLEIPLKRKRIGFFRFDGKLSQKHRERVLKEFSESKEIKVMLISLKAGGVGLN 180
            QWTTFFDLLEIPLKRKRIGFFRFDGKLSQKHRERVLKEFSESKEIKVMLISLKAGGVGLN
Sbjct: 971  QWTTFFDLLEIPLKRKRIGFFRFDGKLSQKHRERVLKEFSESKEIKVMLISLKAGGVGLN 1030

Query: 181  LTAASNVFIMDPWWNPAVEEQAIMRIHRIGQKRTVRVRRFIVKDTVEERMQQVQARKQRM 240
            LTAASNVFIMDPWWNPAVEEQAIMRIHRIGQKR VRVRRFIVKDTVEERMQQVQARKQRM
Sbjct: 1031 LTAASNVFIMDPWWNPAVEEQAIMRIHRIGQKRRVRVRRFIVKDTVEERMQQVQARKQRM 1090

Query: 241  ISGALTDEEVRTARIEELKMLFR 264
            I+GALTDEEVRTARIEELKMLFR
Sbjct: 1091 IAGALTDEEVRTARIEELKMLFR 1113

[Close]

BLAST of MELO3C006448T1 vs. TrEMBL
Match: A0A0D2S976_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G248800 PE=4 SV=1)

HSP 1 Score: 455.3 bits (1170), Expect = 5.1e-125
Identity = 220/263 (83.65%), Postives = 244/263 (92.78%), Query Frame = 1


Query: 1    MEPTAPTRAYVEEVVDCIRRGENTECPICMEFADDAVLTPCAHRMCRECLLSSWRTPTCG 60
            +   APT+AY+EEVVD IRRGENTECPICME ADD VLTPCAHRMCRECLLSSWRTPT G
Sbjct: 850  LNQNAPTKAYIEEVVDGIRRGENTECPICMESADDPVLTPCAHRMCRECLLSSWRTPTLG 909

Query: 61   LCPICRQMLRKTDLITCPSENPFRVDVEKNWKESSKVSKLLECLEQINQSGSGEKSIVFS 120
             CPICR +L+KTDLITCP+EN FRVD++KNWKESSKVSKLL+CLE+  QSGSGEKSIVFS
Sbjct: 910  SCPICRTLLKKTDLITCPTENKFRVDIDKNWKESSKVSKLLDCLERSCQSGSGEKSIVFS 969

Query: 121  QWTTFFDLLEIPLKRKRIGFFRFDGKLSQKHRERVLKEFSESKEIKVMLISLKAGGVGLN 180
            QWT+F DLLEIPLKRK IGF RFDGKL+QK RERVLKEF++++E  V+L+SLKAGGVGLN
Sbjct: 970  QWTSFLDLLEIPLKRKGIGFLRFDGKLAQKQRERVLKEFNDTREKLVLLMSLKAGGVGLN 1029

Query: 181  LTAASNVFIMDPWWNPAVEEQAIMRIHRIGQKRTVRVRRFIVKDTVEERMQQVQARKQRM 240
            LTAASNVF+MDPWWNPAVEEQAIMRIHRIGQKRTV VRRFIVK+TVEERMQQVQARK++M
Sbjct: 1030 LTAASNVFLMDPWWNPAVEEQAIMRIHRIGQKRTVTVRRFIVKETVEERMQQVQARKEKM 1089

Query: 241  ISGALTDEEVRTARIEELKMLFR 264
            I+GALTDEEVR+ARIEELKMLFR
Sbjct: 1090 IAGALTDEEVRSARIEELKMLFR 1112

[Close]

BLAST of MELO3C006448T1 vs. TrEMBL
Match: A0A0B0NXN1_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_10174 PE=4 SV=1)

HSP 1 Score: 449.9 bits (1156), Expect = 2.1e-123
Identity = 217/263 (82.51%), Postives = 242/263 (92.02%), Query Frame = 1


Query: 1    MEPTAPTRAYVEEVVDCIRRGENTECPICMEFADDAVLTPCAHRMCRECLLSSWRTPTCG 60
            +   APT+AY+EEVVD IRRGENTECPICME ADD VLTPCAHRMCRECLLSSWR PT G
Sbjct: 847  LNQNAPTKAYIEEVVDGIRRGENTECPICMESADDPVLTPCAHRMCRECLLSSWRIPTLG 906

Query: 61   LCPICRQMLRKTDLITCPSENPFRVDVEKNWKESSKVSKLLECLEQINQSGSGEKSIVFS 120
             CPICR +L+KTDLITCP+EN FRVD++KNWKESSKVSKLL+CLE+  +SGS EKSIVFS
Sbjct: 907  SCPICRTLLKKTDLITCPTENKFRVDIDKNWKESSKVSKLLDCLERSRRSGSDEKSIVFS 966

Query: 121  QWTTFFDLLEIPLKRKRIGFFRFDGKLSQKHRERVLKEFSESKEIKVMLISLKAGGVGLN 180
            QWT+F DLLEIPLKRK IGF RFDGKL+QK RERVLKEF++++E  V+L+SLKAGGVGLN
Sbjct: 967  QWTSFLDLLEIPLKRKGIGFLRFDGKLAQKQRERVLKEFNDTREKLVLLMSLKAGGVGLN 1026

Query: 181  LTAASNVFIMDPWWNPAVEEQAIMRIHRIGQKRTVRVRRFIVKDTVEERMQQVQARKQRM 240
            LTAASNVF+MDPWWNPAVEEQAIMRIHRIGQKRTV VRRFIVK+TVEERMQQVQARK++M
Sbjct: 1027 LTAASNVFLMDPWWNPAVEEQAIMRIHRIGQKRTVTVRRFIVKETVEERMQQVQARKEKM 1086

Query: 241  ISGALTDEEVRTARIEELKMLFR 264
            I+GALTDEEVR+ARIEELKMLFR
Sbjct: 1087 IAGALTDEEVRSARIEELKMLFR 1109

[Close]

BLAST of MELO3C006448T1 vs. TrEMBL
Match: B9STJ2_RICCO (DNA repair helicase rad5,16, putative OS=Ricinus communis GN=RCOM_0492090 PE=4 SV=1)

HSP 1 Score: 449.1 bits (1154), Expect = 3.6e-123
Identity = 216/262 (82.44%), Postives = 240/262 (91.60%), Query Frame = 1


Query: 2    EPTAPTRAYVEEVVDCIRRGENTECPICMEFADDAVLTPCAHRMCRECLLSSWRTPTCGL 61
            E T PT AY+EEVV+ IR+GEN ECPICME+ADD VLTPCAHRMCRECLLSSWRTPT GL
Sbjct: 790  EQTVPTPAYIEEVVEDIRKGENNECPICMEYADDPVLTPCAHRMCRECLLSSWRTPTTGL 849

Query: 62   CPICRQMLRKTDLITCPSENPFRVDVEKNWKESSKVSKLLECLEQINQSGSGEKSIVFSQ 121
            CPICR +L+K DL+TCP+EN FRV+VE+NWKESSKVSKLLECLE+I +S  GEKSI+FSQ
Sbjct: 850  CPICRTLLKKADLLTCPTENKFRVNVEENWKESSKVSKLLECLERIRRSDCGEKSIIFSQ 909

Query: 122  WTTFFDLLEIPLKRKRIGFFRFDGKLSQKHRERVLKEFSESKEIKVMLISLKAGGVGLNL 181
            WT+F DLLEIPL+R+ IGF RFDGKL QK RER LKEF+E+KE  V+L+SLKAGGVGLNL
Sbjct: 910  WTSFLDLLEIPLRRRAIGFLRFDGKLVQKQRERTLKEFNETKEKMVLLMSLKAGGVGLNL 969

Query: 182  TAASNVFIMDPWWNPAVEEQAIMRIHRIGQKRTVRVRRFIVKDTVEERMQQVQARKQRMI 241
            TAASNVF+MDPWWNPAVEEQAIMRIHRIGQKRTV VRRFIVKDT+EERMQQVQARKQRMI
Sbjct: 970  TAASNVFLMDPWWNPAVEEQAIMRIHRIGQKRTVTVRRFIVKDTLEERMQQVQARKQRMI 1029

Query: 242  SGALTDEEVRTARIEELKMLFR 264
            +GALTDEEVR+ARIEELKMLFR
Sbjct: 1030 AGALTDEEVRSARIEELKMLFR 1051

[Close]

BLAST of MELO3C006448T1 vs. TrEMBL
Match: A0A068TTE9_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00026258001 PE=4 SV=1)

HSP 1 Score: 448.0 bits (1151), Expect = 8.1e-123
Identity = 216/258 (83.72%), Postives = 241/258 (93.41%), Query Frame = 1


Query: 6   PTRAYVEEVVDCIRRGENTECPICMEFADDAVLTPCAHRMCRECLLSSWRTPTCGLCPIC 65
           P+RAYVEEVV+ IR+GEN ECPIC+E ADD VLTPCAHRMCRECLLSSWR+PT G CPIC
Sbjct: 272 PSRAYVEEVVEGIRKGENAECPICLESADDPVLTPCAHRMCRECLLSSWRSPTAGACPIC 331

Query: 66  RQMLRKTDLITCPSENPFRVDVEKNWKESSKVSKLLECLEQINQSGSGEKSIVFSQWTTF 125
           RQ+ +KT++ITCPSEN FRVDVEKNWKESSKVSKLL+CLE++ +SGSGEKSIVFSQWT+F
Sbjct: 332 RQVFKKTEIITCPSENRFRVDVEKNWKESSKVSKLLDCLERLRKSGSGEKSIVFSQWTSF 391

Query: 126 FDLLEIPLKRKRIGFFRFDGKLSQKHRERVLKEFSESKEIKVMLISLKAGGVGLNLTAAS 185
            DLLEIPLKR+RIGF RFDG+LSQK RE VL+EF+E+ E  V+L+SLKAGGVGLNLTAAS
Sbjct: 392 LDLLEIPLKRRRIGFLRFDGRLSQKQREIVLREFNETGEKMVLLMSLKAGGVGLNLTAAS 451

Query: 186 NVFIMDPWWNPAVEEQAIMRIHRIGQKRTVRVRRFIVKDTVEERMQQVQARKQRMISGAL 245
           NVF+MDPWWNPAVEEQAIMRIHRIGQKRTVRVRRFIVK TVEER+QQVQARKQRMI+GAL
Sbjct: 452 NVFLMDPWWNPAVEEQAIMRIHRIGQKRTVRVRRFIVKGTVEERLQQVQARKQRMIAGAL 511

Query: 246 TDEEVRTARIEELKMLFR 264
           TDEEVR+ARIEELKMLFR
Sbjct: 512 TDEEVRSARIEELKMLFR 529

[Close]

BLAST of MELO3C006448T1 vs. TAIR10
Match: AT5G43530.1 (AT5G43530.1 Helicase protein with RING/U-box domain)

HSP 1 Score: 426.0 bits (1094), Expect = 1.7e-119
Identity = 202/259 (77.99%), Postives = 237/259 (91.51%), Query Frame = 1


Query: 5    APTRAYVEEVVDCIRRGENTECPICMEFADDAVLTPCAHRMCRECLLSSWRTPTCGLCPI 64
            AP+RAY+EEV+  +R G + ECPIC+E ADD VLTPCAHRMCRECLL+SWR+P+CGLCPI
Sbjct: 1019 APSRAYIEEVIQDLRDGNSKECPICLESADDPVLTPCAHRMCRECLLTSWRSPSCGLCPI 1078

Query: 65   CRQMLRKTDLITCPSENPFRVDVEKNWKESSKVSKLLECLEQINQSGSGEKSIVFSQWTT 124
            CR +L++T+LI+CP+++ FRVDV KNWKESSKVS+LL+CLE+I +SGSGEKSIVFSQWT+
Sbjct: 1079 CRTILKRTELISCPTDSIFRVDVVKNWKESSKVSELLKCLEKIKKSGSGEKSIVFSQWTS 1138

Query: 125  FFDLLEIPLKRKRIGFFRFDGKLSQKHRERVLKEFSESKEIKVMLISLKAGGVGLNLTAA 184
            F DLLEIPL+R+   F RFDGKL+QK RE+VLKEF+E+K+  ++L+SLKAGGVGLNLTAA
Sbjct: 1139 FLDLLEIPLRRRGFEFLRFDGKLAQKGREKVLKEFNETKQKTILLMSLKAGGVGLNLTAA 1198

Query: 185  SNVFIMDPWWNPAVEEQAIMRIHRIGQKRTVRVRRFIVKDTVEERMQQVQARKQRMISGA 244
            S+VF+MDPWWNPAVEEQAIMRIHRIGQKRTV VRRFIVKDTVEERMQQVQARKQRMI+GA
Sbjct: 1199 SSVFLMDPWWNPAVEEQAIMRIHRIGQKRTVFVRRFIVKDTVEERMQQVQARKQRMIAGA 1258

Query: 245  LTDEEVRTARIEELKMLFR 264
            LTDEEVR+AR+EELKMLFR
Sbjct: 1259 LTDEEVRSARLEELKMLFR 1277

[Close]

BLAST of MELO3C006448T1 vs. TAIR10
Match: AT5G22750.1 (AT5G22750.1 DNA/RNA helicase protein)

HSP 1 Score: 372.5 bits (955), Expect = 2.2e-103
Identity = 180/257 (70.04%), Postives = 212/257 (82.49%), Query Frame = 1


Query: 6    PTRAYVEEVVDCIRRGENTECPICMEFADDAVLTPCAHRMCRECLLSSWRTPTCGLCPIC 65
            P+ A+V+EVV+ +R+GE  ECPIC+E  +DAVLTPCAHR+CRECLL+SWR  T GLCP+C
Sbjct: 774  PSEAFVQEVVEELRKGEQGECPICLEALEDAVLTPCAHRLCRECLLASWRNSTSGLCPVC 833

Query: 66   RQMLRKTDLITCPSENPFRVDVEKNWKESSKVSKLLECLEQINQSGSGEKSIVFSQWTTF 125
            R  + K +LIT P+E+ F+VDVEKNW ESSK++ LLE LE +  SGS  KSI+FSQWT F
Sbjct: 834  RNTVSKQELITAPTESRFQVDVEKNWVESSKITALLEELEGLRSSGS--KSILFSQWTAF 893

Query: 126  FDLLEIPLKRKRIGFFRFDGKLSQKHRERVLKEFSESKEIKVMLISLKAGGVGLNLTAAS 185
             DLL+IPL R    F R DG LSQ+ RE+VLKEFSE   I V+L+SLKAGGVG+NLTAAS
Sbjct: 894  LDLLQIPLSRNNFSFVRLDGTLSQQQREKVLKEFSEDGSILVLLMSLKAGGVGINLTAAS 953

Query: 186  NVFIMDPWWNPAVEEQAIMRIHRIGQKRTVRVRRFIVKDTVEERMQQVQARKQRMISGAL 245
            N F+MDPWWNPAVEEQA+MRIHRIGQ + V++RRFIVK TVEERM+ VQARKQRMISGAL
Sbjct: 954  NAFVMDPWWNPAVEEQAVMRIHRIGQTKEVKIRRFIVKGTVEERMEAVQARKQRMISGAL 1013

Query: 246  TDEEVRTARIEELKMLF 263
            TD+EVR+ARIEELKMLF
Sbjct: 1014 TDQEVRSARIEELKMLF 1028

[Close]

BLAST of MELO3C006448T1 vs. TAIR10
Match: AT5G05130.1 (AT5G05130.1 DNA/RNA helicase protein)

HSP 1 Score: 185.3 bits (469), Expect = 5.0e-47
Identity = 101/250 (40.40%), Postives = 148/250 (59.20%), Query Frame = 1


Query: 11  VEEVVDCIRRGENTECPICMEFADDAVLTPCAHRMCRECLLSSWRTPTCGLCPICRQMLR 70
           ++++V  ++ GE+ +CPIC+    + ++T CAH  CR C+L + +     LCP+CR  L 
Sbjct: 601 LQKLVAALQDGEDFDCPICISPPTNIIITRCAHIFCRACILQTLQRSK-PLCPLCRGSLT 660

Query: 71  KTDLITCPSENPFRVDVE----KNWKESSKVSKLLECLEQINQSGSGEKSIVFSQWTTFF 130
           ++DL   P   P   + +    K+  +SSKVS LL  L    Q     KS+VFSQ+    
Sbjct: 661 QSDLYNAPPPPPDSSNTDGEDAKSSTKSSKVSALLSLLMASRQENPNTKSVVFSQFRKML 720

Query: 131 DLLEIPLKRKRIGFFRFDGKLSQKHRERVLKEFS--ESKEIKVMLISLKAGGVGLNLTAA 190
            LLE PLK       R DG ++ K R +V+ EF   E     V+L SLKA G G+NLTAA
Sbjct: 721 LLLETPLKAAGFTILRLDGAMTVKKRTQVIGEFGNPELTGPVVLLASLKASGTGINLTAA 780

Query: 191 SNVFIMDPWWNPAVEEQAIMRIHRIGQKRTVRVRRFIVKDTVEERMQQVQARKQRMISGA 250
           S V++ DPWWNPAVEEQA+ RIHRIGQK+ V++ R I ++++EER+ ++Q +K+ + + A
Sbjct: 781 SRVYLFDPWWNPAVEEQAMDRIHRIGQKQEVKMIRMIARNSIEERVLELQQKKKNLANEA 840

Query: 251 LTDEEVRTAR 255
               + +  R
Sbjct: 841 FKRRQKKDER 849

[Close]

BLAST of MELO3C006448T1 vs. TAIR10
Match: AT1G05120.1 (AT1G05120.1 Helicase protein with RING/U-box domain)

HSP 1 Score: 166.0 bits (419), Expect = 3.1e-41
Identity = 92/253 (36.36%), Postives = 143/253 (56.52%), Query Frame = 1


Query: 25  ECPICMEFADDAVLTPCAHRMCRECLLSSWRTPTCGLCPICRQMLRKTDLITCPSENPFR 84
           EC +C + A+D V+T CAH  C+ CL+    +     CP C ++L         +E+   
Sbjct: 578 ECGLCHDPAEDYVVTSCAHVFCKACLIGFSASLGKVTCPTCSKLLTVDWTTKADTEHKAS 637

Query: 85  VDVEKNWKESSKVSKL----------LECLEQ-----INQSGSGEKSIVFSQWTTFFDLL 144
               K ++ SS ++++          +E L +     + + GS  K+IVFSQ+T+F DL+
Sbjct: 638 KTTLKGFRASSILNRIKLDDFQTSTKIEALREEIRFMVERDGSA-KAIVFSQFTSFLDLI 697

Query: 145 EIPLKRKRIGFFRFDGKLSQKHRERVLKEFSESKEIKVMLISLKAGGVGLNLTAASNVFI 204
              L +  +   +  G ++   R+  + +F E  + +V L+SLKAGGV LNLT AS+VF+
Sbjct: 698 NYTLGKCGVSCVQLVGSMTMAARDTAINKFKEDPDCRVFLMSLKAGGVALNLTVASHVFM 757

Query: 205 MDPWWNPAVEEQAIMRIHRIGQKRTVRVRRFIVKDTVEERMQQVQARKQRMISGALTDEE 263
           MDPWWNPAVE QA  RIHRIGQ + +RV RFI+++TVEER+ ++Q +K+ +  G +   +
Sbjct: 758 MDPWWNPAVERQAQDRIHRIGQYKPIRVVRFIIENTVEERILRLQKKKELVFEGTVGGSQ 817

[Close]

BLAST of MELO3C006448T1 vs. TAIR10
Match: AT3G20010.1 (AT3G20010.1 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related)

HSP 1 Score: 144.8 bits (364), Expect = 7.4e-35
Identity = 73/163 (44.79%), Postives = 102/163 (62.58%), Query Frame = 1


Query: 104  LEQINQSGSGEKSIVFSQWTTFFDLLEIPLKRKRIGFFRFDGKLSQKHRERVLKEFSESK 163
            L   + S    K+I+FSQWT   DL+E+ +    I F R DG +S   R+R +KEFS+  
Sbjct: 883  LHSSSPSQGAVKTIIFSQWTGMLDLVELRILESGIEFRRLDGTMSLAARDRAVKEFSKKP 942

Query: 164  EIKVMLISLKAGGVGLNLTAASNVFIMDPWWNPAVEEQAIMRIHRIGQKRTVRVRRFIVK 223
            ++KVML+SLKAG +GLN+ AA +V ++D WWNP  E+QAI R HRIGQ R V V R  +K
Sbjct: 943  DVKVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIK 1002

Query: 224  DTVEERMQQVQARKQRMISGALTDE----EVRTARIEELKMLF 263
            DTVE+R+ ++Q  K+ M++ A  +E          +++LK LF
Sbjct: 1003 DTVEDRILKLQEEKRTMVASAFGEEHGGSSATRLTVDDLKYLF 1045

HSP 2 Score: 124.0 bits (310), Expect = 1.4e-28
Identity = 93/296 (31.42%), Postives = 139/296 (46.96%), Query Frame = 1


Query: 26   CPICMEFADDAVLTPCAHRMCRECLLSSWRTPTCGLCPI--CRQMLRK------TDLITC 85
            C  C E  +  V+T C H  C EC+L  + T     CP+  C+Q L +      + L  C
Sbjct: 751  CYECNEPPEKPVVTLCGHIFCYECVL-EYITGDENTCPVPRCKQQLARDVVFSESSLRNC 810

Query: 86   PSENPFRVDVEKNWKE----------SSKVSKLLECLEQINQ---SGSGEKSIVFSQWTT 145
             S++        N  +          SSK+  +L+ L+ ++Q     S +   + S    
Sbjct: 811  TSDDSGCSSSHDNGLDRSVFQKRDFCSSKIKAVLDILQSLSQPDSPNSAQHGQMPSSSRP 870

Query: 146  FFD---LLEIPLKR----------KRIGFF---------------------RFDGKLSQK 205
            + D    +  P++           K I F                      R DG +S  
Sbjct: 871  YDDDDVTIVEPMRLHSSSPSQGAVKTIIFSQWTGMLDLVELRILESGIEFRRLDGTMSLA 930

Query: 206  HRERVLKEFSESKEIKVMLISLKAGGVGLNLTAASNVFIMDPWWNPAVEEQAIMRIHRIG 263
             R+R +KEFS+  ++KVML+SLKAG +GLN+ AA +V ++D WWNP  E+QAI R HRIG
Sbjct: 931  ARDRAVKEFSKKPDVKVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIG 990

[Close]

BLAST of MELO3C006448T1 vs. NCBI nr
Match: gi|659076202|ref|XP_008438555.1| (PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 [Cucumis melo])

HSP 1 Score: 534.6 bits (1376), Expect = 9.5e-149
Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 1


Query: 1    MEPTAPTRAYVEEVVDCIRRGENTECPICMEFADDAVLTPCAHRMCRECLLSSWRTPTCG 60
            MEPTAPTRAYVEEVVDCIRRGENTECPICMEFADDAVLTPCAHRMCRECLLSSWRTPTCG
Sbjct: 854  MEPTAPTRAYVEEVVDCIRRGENTECPICMEFADDAVLTPCAHRMCRECLLSSWRTPTCG 913

Query: 61   LCPICRQMLRKTDLITCPSENPFRVDVEKNWKESSKVSKLLECLEQINQSGSGEKSIVFS 120
            LCPICRQMLRKTDLITCPSENPFRVDVEKNWKESSKVSKLLECLEQINQSGSGEKSIVFS
Sbjct: 914  LCPICRQMLRKTDLITCPSENPFRVDVEKNWKESSKVSKLLECLEQINQSGSGEKSIVFS 973

Query: 121  QWTTFFDLLEIPLKRKRIGFFRFDGKLSQKHRERVLKEFSESKEIKVMLISLKAGGVGLN 180
            QWTTFFDLLEIPLKRKRIGFFRFDGKLSQKHRERVLKEFSESKEIKVMLISLKAGGVGLN
Sbjct: 974  QWTTFFDLLEIPLKRKRIGFFRFDGKLSQKHRERVLKEFSESKEIKVMLISLKAGGVGLN 1033

Query: 181  LTAASNVFIMDPWWNPAVEEQAIMRIHRIGQKRTVRVRRFIVKDTVEERMQQVQARKQRM 240
            LTAASNVFIMDPWWNPAVEEQAIMRIHRIGQKRTVRVRRFIVKDTVEERMQQVQARKQRM
Sbjct: 1034 LTAASNVFIMDPWWNPAVEEQAIMRIHRIGQKRTVRVRRFIVKDTVEERMQQVQARKQRM 1093

Query: 241  ISGALTDEEVRTARIEELKMLFR 264
            ISGALTDEEVRTARIEELKMLFR
Sbjct: 1094 ISGALTDEEVRTARIEELKMLFR 1116

[Close]

BLAST of MELO3C006448T1 vs. NCBI nr
Match: gi|449433265|ref|XP_004134418.1| (PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 [Cucumis sativus])

HSP 1 Score: 510.8 bits (1314), Expect = 1.5e-141
Identity = 250/263 (95.06%), Postives = 257/263 (97.72%), Query Frame = 1


Query: 1    MEPTAPTRAYVEEVVDCIRRGENTECPICMEFADDAVLTPCAHRMCRECLLSSWRTPTCG 60
            ME  APTRAYVE+VV+CIRRGENTECPIC+EFADDAVLTPCAHRMCRECLLSSWRTPTCG
Sbjct: 851  MEQVAPTRAYVEDVVECIRRGENTECPICLEFADDAVLTPCAHRMCRECLLSSWRTPTCG 910

Query: 61   LCPICRQMLRKTDLITCPSENPFRVDVEKNWKESSKVSKLLECLEQINQSGSGEKSIVFS 120
             CPICRQMLRKT+LITCPSE+PFRVDVEKNWKESSKVSKLLECLE+IN  GSGEKSIVFS
Sbjct: 911  FCPICRQMLRKTELITCPSESPFRVDVEKNWKESSKVSKLLECLERINLLGSGEKSIVFS 970

Query: 121  QWTTFFDLLEIPLKRKRIGFFRFDGKLSQKHRERVLKEFSESKEIKVMLISLKAGGVGLN 180
            QWTTFFDLLEIPLKRKRIGFFRFDGKLSQKHRERVLKEFSESKEIKVMLISLKAGGVGLN
Sbjct: 971  QWTTFFDLLEIPLKRKRIGFFRFDGKLSQKHRERVLKEFSESKEIKVMLISLKAGGVGLN 1030

Query: 181  LTAASNVFIMDPWWNPAVEEQAIMRIHRIGQKRTVRVRRFIVKDTVEERMQQVQARKQRM 240
            LTAASNVFIMDPWWNPAVEEQAIMRIHRIGQKR VRVRRFIVKDTVEERMQQVQARKQRM
Sbjct: 1031 LTAASNVFIMDPWWNPAVEEQAIMRIHRIGQKRRVRVRRFIVKDTVEERMQQVQARKQRM 1090

Query: 241  ISGALTDEEVRTARIEELKMLFR 264
            I+GALTDEEVRTARIEELKMLFR
Sbjct: 1091 IAGALTDEEVRTARIEELKMLFR 1113

[Close]

BLAST of MELO3C006448T1 vs. NCBI nr
Match: gi|823178825|ref|XP_012487271.1| (PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 isoform X1 [Gossypium raimondii])

HSP 1 Score: 455.3 bits (1170), Expect = 7.3e-125
Identity = 220/263 (83.65%), Postives = 244/263 (92.78%), Query Frame = 1


Query: 1    MEPTAPTRAYVEEVVDCIRRGENTECPICMEFADDAVLTPCAHRMCRECLLSSWRTPTCG 60
            +   APT+AY+EEVVD IRRGENTECPICME ADD VLTPCAHRMCRECLLSSWRTPT G
Sbjct: 851  LNQNAPTKAYIEEVVDGIRRGENTECPICMESADDPVLTPCAHRMCRECLLSSWRTPTLG 910

Query: 61   LCPICRQMLRKTDLITCPSENPFRVDVEKNWKESSKVSKLLECLEQINQSGSGEKSIVFS 120
             CPICR +L+KTDLITCP+EN FRVD++KNWKESSKVSKLL+CLE+  QSGSGEKSIVFS
Sbjct: 911  SCPICRTLLKKTDLITCPTENKFRVDIDKNWKESSKVSKLLDCLERSCQSGSGEKSIVFS 970

Query: 121  QWTTFFDLLEIPLKRKRIGFFRFDGKLSQKHRERVLKEFSESKEIKVMLISLKAGGVGLN 180
            QWT+F DLLEIPLKRK IGF RFDGKL+QK RERVLKEF++++E  V+L+SLKAGGVGLN
Sbjct: 971  QWTSFLDLLEIPLKRKGIGFLRFDGKLAQKQRERVLKEFNDTREKLVLLMSLKAGGVGLN 1030

Query: 181  LTAASNVFIMDPWWNPAVEEQAIMRIHRIGQKRTVRVRRFIVKDTVEERMQQVQARKQRM 240
            LTAASNVF+MDPWWNPAVEEQAIMRIHRIGQKRTV VRRFIVK+TVEERMQQVQARK++M
Sbjct: 1031 LTAASNVFLMDPWWNPAVEEQAIMRIHRIGQKRTVTVRRFIVKETVEERMQQVQARKEKM 1090

Query: 241  ISGALTDEEVRTARIEELKMLFR 264
            I+GALTDEEVR+ARIEELKMLFR
Sbjct: 1091 IAGALTDEEVRSARIEELKMLFR 1113

[Close]

BLAST of MELO3C006448T1 vs. NCBI nr
Match: gi|823178828|ref|XP_012487273.1| (PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 isoform X2 [Gossypium raimondii])

HSP 1 Score: 455.3 bits (1170), Expect = 7.3e-125
Identity = 220/263 (83.65%), Postives = 244/263 (92.78%), Query Frame = 1


Query: 1    MEPTAPTRAYVEEVVDCIRRGENTECPICMEFADDAVLTPCAHRMCRECLLSSWRTPTCG 60
            +   APT+AY+EEVVD IRRGENTECPICME ADD VLTPCAHRMCRECLLSSWRTPT G
Sbjct: 850  LNQNAPTKAYIEEVVDGIRRGENTECPICMESADDPVLTPCAHRMCRECLLSSWRTPTLG 909

Query: 61   LCPICRQMLRKTDLITCPSENPFRVDVEKNWKESSKVSKLLECLEQINQSGSGEKSIVFS 120
             CPICR +L+KTDLITCP+EN FRVD++KNWKESSKVSKLL+CLE+  QSGSGEKSIVFS
Sbjct: 910  SCPICRTLLKKTDLITCPTENKFRVDIDKNWKESSKVSKLLDCLERSCQSGSGEKSIVFS 969

Query: 121  QWTTFFDLLEIPLKRKRIGFFRFDGKLSQKHRERVLKEFSESKEIKVMLISLKAGGVGLN 180
            QWT+F DLLEIPLKRK IGF RFDGKL+QK RERVLKEF++++E  V+L+SLKAGGVGLN
Sbjct: 970  QWTSFLDLLEIPLKRKGIGFLRFDGKLAQKQRERVLKEFNDTREKLVLLMSLKAGGVGLN 1029

Query: 181  LTAASNVFIMDPWWNPAVEEQAIMRIHRIGQKRTVRVRRFIVKDTVEERMQQVQARKQRM 240
            LTAASNVF+MDPWWNPAVEEQAIMRIHRIGQKRTV VRRFIVK+TVEERMQQVQARK++M
Sbjct: 1030 LTAASNVFLMDPWWNPAVEEQAIMRIHRIGQKRTVTVRRFIVKETVEERMQQVQARKEKM 1089

Query: 241  ISGALTDEEVRTARIEELKMLFR 264
            I+GALTDEEVR+ARIEELKMLFR
Sbjct: 1090 IAGALTDEEVRSARIEELKMLFR 1112

[Close]

BLAST of MELO3C006448T1 vs. NCBI nr
Match: gi|697138409|ref|XP_009623281.1| (PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 [Nicotiana tomentosiformis])

HSP 1 Score: 453.0 bits (1164), Expect = 3.6e-124
Identity = 220/259 (84.94%), Postives = 238/259 (91.89%), Query Frame = 1


Query: 5    APTRAYVEEVVDCIRRGENTECPICMEFADDAVLTPCAHRMCRECLLSSWRTPTCGLCPI 64
            APT AYVEEVV+ IR GENTECPIC+E ADD VLTPCAHRMCRECLLSSWRTPT GLCPI
Sbjct: 925  APTPAYVEEVVEGIRYGENTECPICLESADDPVLTPCAHRMCRECLLSSWRTPTSGLCPI 984

Query: 65   CRQMLRKTDLITCPSENPFRVDVEKNWKESSKVSKLLECLEQINQSGSGEKSIVFSQWTT 124
            CRQMLRK +L TCPSEN FR+DVEKNW+ESSKVSKLLECLE I ++G GEKSIVFSQWT+
Sbjct: 985  CRQMLRKNELFTCPSENRFRIDVEKNWQESSKVSKLLECLESIRKTGCGEKSIVFSQWTS 1044

Query: 125  FFDLLEIPLKRKRIGFFRFDGKLSQKHRERVLKEFSESKEIKVMLISLKAGGVGLNLTAA 184
            F DLLEIPLKRK+IG+ RFDGKL QK RERVLKEFSE+ E  ++L+SLKAGGVGLNLTAA
Sbjct: 1045 FLDLLEIPLKRKKIGYLRFDGKLVQKQRERVLKEFSETNEKTILLMSLKAGGVGLNLTAA 1104

Query: 185  SNVFIMDPWWNPAVEEQAIMRIHRIGQKRTVRVRRFIVKDTVEERMQQVQARKQRMISGA 244
            SNVF+MDPWWNPAVEEQAIMRIHRIGQK TVRVRRFIVKDTVEERMQQVQ RKQRMI+GA
Sbjct: 1105 SNVFLMDPWWNPAVEEQAIMRIHRIGQKNTVRVRRFIVKDTVEERMQQVQGRKQRMIAGA 1164

Query: 245  LTDEEVRTARIEELKMLFR 264
            LTDEEVR+AR+EELKMLFR
Sbjct: 1165 LTDEEVRSARLEELKMLFR 1183

The following BLAST results are available for this feature:

BLAST of MELO3C006448T1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SM3L3_ARATH	3.0e-118	77.99	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromati...	[more]
SM3L2_ARATH	3.9e-102	70.04	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromati...	[more]
HLTF_HUMAN	3.2e-48	40.87	Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1 SV=2	[more]
HLTF_MOUSE	6.1e-47	39.11	Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1 SV=1	[more]
RAD5_GIBZE	1.0e-46	42.37	DNA repair protein RAD5 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9...	[more]

BLAST of MELO3C006448T1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9Y2_CUCSA	1.0e-141	95.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G141820 PE=4 SV=1	[more]
A0A0D2S976_GOSRA	5.1e-125	83.65	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G248800 PE=4 SV=1	[more]
A0A0B0NXN1_GOSAR	2.1e-123	82.51	Uncharacterized protein OS=Gossypium arboreum GN=F383_10174 PE=4 SV=1	[more]
B9STJ2_RICCO	3.6e-123	82.44	DNA repair helicase rad5,16, putative OS=Ricinus communis GN=RCOM_0492090 PE=4 S...	[more]
A0A068TTE9_COFCA	8.1e-123	83.72	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00026258001 PE=4 SV=1	[more]

BLAST of MELO3C006448T1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G43530.1	1.7e-119	77.99	Helicase protein with RING/U-box domain	[more]
AT5G22750.1	2.2e-103	70.04	DNA/RNA helicase protein	[more]
AT5G05130.1	5.0e-47	40.40	DNA/RNA helicase protein	[more]
AT1G05120.1	3.1e-41	36.36	Helicase protein with RING/U-box domain	[more]
AT3G20010.1	7.4e-35	44.79	SNF2 domain-containing protein / helicase domain-containing protein ...	[more]

BLAST of MELO3C006448T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659076202\|ref\|XP_008438555.1\|	9.5e-149	100.00	PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator ...	[more]
gi\|449433265\|ref\|XP_004134418.1\|	1.5e-141	95.06	PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator ...	[more]
gi\|823178825\|ref\|XP_012487271.1\|	7.3e-125	83.65	PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator ...	[more]
gi\|823178828\|ref\|XP_012487273.1\|	7.3e-125	83.65	PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator ...	[more]
gi\|697138409\|ref\|XP_009623281.1\|	3.6e-124	84.94	PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator ...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001650	Helicase_C
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD
IPR017907	Znf_RING_CS
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0009941	chloroplast envelope
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016740	transferase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C006448	MELO3C006448	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C006448T1	MELO3C006448T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C006448T1.cds1	MELO3C006448T1.cds1	CDS
MELO3C006448T1.cds2	MELO3C006448T1.cds2	CDS
MELO3C006448T1.cds3	MELO3C006448T1.cds3	CDS
MELO3C006448T1.cds4	MELO3C006448T1.cds4	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 99..210 score: 7.6
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 127..210 score: 3.3
IPR001650	Helicase, C-terminal	PROFILE	PS51194	HELICASE_CTER	coord: 96..258 score: 15
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 26..65 score: 2.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 26..66 score: 11
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 22..78 score: 2.6
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 41..50 scor
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 90..239 score: 1.0
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 87..254 score: 6.2
None	No IPR available	PANTHER	PTHR10799	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED	coord: 86..263 score: 5.9E-149coord: 38..65 score: 5.9E
None	No IPR available	PANTHER	PTHR10799:SF779	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A MEMBER 3-LIKE 3-RELATED	coord: 38..65 score: 5.9E-149coord: 86..263 score: 5.9E
None	No IPR available	PFAM	PF13920	zf-C3HC4_3	coord: 23..71 score: 3.
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 23..76 score: 7.9