MELO3C006351.2.1 (mRNA) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C006351.2.1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	F-box protein GID2
Location	chr06 : 2746636 .. 2750154 (-)
Sequence length	1148

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGCTTGGTTGGTATCTTCTCCTATTGCAATTTGCAACCGCCGTTCCTTCAACAATGTCGGCTCGGTTGCAATGTTAATCGCCGATCGTTCATCCTCGTCAAAAAACCCTTCACTATAAACCCCTCTCGCCTCCTCTTCAGCTTTGAATTTTATGGCGCAAAGCGACTTCCTCGACGGCGGAGCTCGGTGGAAAACTAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCGAGAGACTGTCTCCGATGAACGAGGGCAACAAAATAGAAGAACCGGAAATCCTATTCTCCAAGATCCTTTTGAGGTTTTAGGCTCTGATCTATTAATGATTATACTGAGCTACCTCGATGCACGCAGCGTGGCACTTTCTCTCCTTGTCTCTCGATCTTGGTACGCCGTTGCTTCAAGCGATCGTCTATGGAGTTCGAAGGTCAGCGTCTTCACTCCGTTAATTAGTTGATGTTATTGTGTGCTTGTGATTTAATTCGATTTTATTGAATTGGATTTTGGTATTTCCTGTTTTGTTTGTATTAGTAGTTAGTAATTGTTCGGCTAGTGCGAATGGAATCGAGTCACTCGTTTTTGTGTTTAGAAGTTCGATTCGTTTCTGTAGCTTTCATTTCTGTTTTTAATCTTTAATTTATGTAGCCTGTGTCTCTTTCTGCCGAATTTGGTCTTTTTTACATCGATGGATCATAGGTTCATAACAGACTGCATATAGTTGATTAGTAGTTCAATCTCTCTCACGTTAATTTGAATTATTTATCCGGGCTATTGAAAATTTATCTTCAGACCATTTCCTTGACTCTTTCCAAGTGCGAGTTTAGATGGTTTTGGGATTGGTAAAGTGCTTTAAGCCTACTAAAATTATCAAAGTGTATTCATAGTTTTTTGGGTAGATAATCAAAATTTCCTAGATACGGAATCTCGACATCATGTAATCCTTTGGAGAAATACTTAGGTTGTAGTATACTTCTTTCGCCCTTAATGATATGAAATTGTGTGTGCATAGTTTTGACTTATATCTACAATGTAATGTCGAGAGCTTGTTTAGGTGTGTTTGGAAGGTATTCTAAATTATTTTCTAAAATTTCTGTCTTCTTTTAGGCCCTTAGAAAATTTGGAATTTGAAGATGTGTTTTAGTTTATTTGCATAACCGCAAGTAGTCGATGTTATTGTGATATGATTACGTACATAAACTCTTTATATGAACAAGAGTTGAAGTTGAACCCAAGAAGTTCATATCTTTCTTAGTAAGAGTGATGATTTCATGTTTATTGGTTGTGTGCAATGCTAAGTCTCTGGAGGTTGGAGAGTTTCTTGGCTTTTTCGAATGGTTGTCTCTGCTTTATTCAAGAACTGGTTTGCATTTTCTTTTACTAAAATTAATTTTTTTAAAAAAAAATCCCCATCCGACCTGCTTTGGACTTTGAACCGGGTCGGGTCCGATTCTGGTTGGGTTTCAAGGAAATCAACCCGATTACACCCCTACTTCTTACTGGGTAGCCCATTCCTGTGTATGGACATGGGATGATTGTGACTGCCTGTCATGTCTCATTAGATACTGGGATAGAAGATCGAAAATTTTACAATTCTGAAATTGTCTAGCAGCAAAGATAACTGAACATTTGGTAAGATAATTTATTGAGTTTTCTCTCAGTGCCTGGAACTGTGGCTCGGGAAAGCACATATCCCTAGATTGGCGCAAAGCCGAGGTCTTCCAAAGCTAGCTGCTTATTCATTATCCATTATGGATGGCAAACGGGTTAAGTCTCTTTTTCCACCCTCAAGTATAGTTGTGGGAGTGTGCTGTTACATATACATATATATGAATGTTACTCAATTTATAGTTGTGTGGCCGCAGTTGGGATGACCAAATGCACCTACTAATCAATCTTATCGTCAATAATTTAGAAAAATGTTCTAAACATGTACTCCCAATCATGGATAGTAAGAACTGAGAAGCTTGTATTACTTTGATATTATTTTTTTACGGGTTTAACTTCTTGTATCAGACTCGCATTATGAGGGAGGATTTATGTGATCATGCCTGGCAATTTCACTTCAATAAGGTATGCTAGTCTTTATGCAATTATGAAAACTTTTTTCTGTGCTATCCATCATGTAGTGAATTAGATGACATGAAGCCTGGTTAAGAGAGAAGGATATTTAAATTAAGTGGATGACTTTTATGTTTGTGTTTTATGATTAATTAAATCTGACTATGTTATTAACATATTCTCTAAAATTTGATCACCTTCTATCTCTTCTACACCATACCATAGGCACCATACGACGCTTCATGCTATCTGCATCTAATTTTATCTTGTCTTTTAAAGTTAAATGGTTGGTGATGGATGCTTTGGCAATACCAAATTCATGGATGATCCTCACGATTTGGATAGCCATGCTAGTGGTTGTATAATAAAAAGTCAAACATGCATGAAAAATTCCCATAGCACAGGTACTTTATCGTATATAATGTGTCCATTTTCAAATTTGTGTGGTGTCATGCTTCTTTGTGAAATTTTTATGCTGGTGCTTGTAGTATTGACAGCCGTAATACTGATTTAGAGGGTATGTCCAAATACCAATTGACAAGTACTAGTACTAGTGCTCATAGTATTGATGGCCATAAGTTGTCAAGCTTGAGCTCGAATACCAATTGACATGTGCAATTACATGGTTCTATTAGCGTGCTCTAGCTGCTTGCTGGTGCTGGTTTTAAACCAATCTACCAATCTTCTGCTTAGATGCTAATGTATCTAAAGTCCATGTGCACAAATCTATAAGGCTCCTTTCCAGAAGGGGCAAATTGATTCATAATATCTGGAAGGTTAATTTCTGTTTCCTTCAGGAAGCTCCAGTATACTGGCGAGATCTTGATCCATATTGGCAAGGAAGCCACCCTCTCATGCGCCGTTATTTCCATCCCGATGGGAGCCAAACTGCAGATCCTGATGATAGAGTATGGGGTGGTCATGAAAGCTGCTTTTCTACTGTTACAAGTTTTGTTGGTGATGGGGAGATCAGAGAACACTATGTTAGAATAAACAGATGGCCACGAATGTTTGTGTCAAGGAATGAAGATTGGAGCTGGAGGATGTCTAATCACTTCACCTCCTACTCGAGCATAGCCGATCCTGACAAGGCTGGCGGGACAGGTCCACTTTAACAGCAGCTGGTGATCAAATTGCTTGTTTGCTCTTTCTTCTAGAGGCTGCTGTTTTGCTCTTTGTACAGAATTCTTGGGAATATAGTATAGGGAAGGAATTGGTGATAATTTTGGTTGGATCACATGTTTGTTTGGTCCTTTGCCTAAAAATGGGAGTAGCTTCGTATGTTTCTAGGATTTCCTTATTGTTACTGTTAGTTTTTTCCTTGAGAGAATGTATTTAATTAGATGGTTGCTTACTAGCAGGTAGTAAGATTTGAAATTAATAAGTTGAGTTTGTTTTTCTTAAGTTACATATCTGTTAAATGTTATAAAAATAATTAGATAGGAAGTTA

mRNA sequence

AAAGCTTGGTTGGTATCTTCTCCTATTGCAATTTGCAACCGCCGTTCCTTCAACAATGTCGGCTCGGTTGCAATGTTAATCGCCGATCGTTCATCCTCGTCAAAAAACCCTTCACTATAAACCCCTCTCGCCTCCTCTTCAGCTTTGAATTTTATGGCGCAAAGCGACTTCCTCGACGGCGGAGCTCGGTGGAAAACTAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCGAGAGACTGTCTCCGATGAACGAGGGCAACAAAATAGAAGAACCGGAAATCCTATTCTCCAAGATCCTTTTGAGGTTTTAGGCTCTGATCTATTAATGATTATACTGAGCTACCTCGATGCACGCAGCGTGGCACTTTCTCTCCTTGTCTCTCGATCTTGGTACGCCGTTGCTTCAAGCGATCGTCTATGGAGTTCGAAGACTCGCATTATGAGGGAGGATTTATGTGATCATGCCTGGCAATTTCACTTCAATAAGGAAGCTCCAGTATACTGGCGAGATCTTGATCCATATTGGCAAGGAAGCCACCCTCTCATGCGCCGTTATTTCCATCCCGATGGGAGCCAAACTGCAGATCCTGATGATAGAGTATGGGGTGGTCATGAAAGCTGCTTTTCTACTGTTACAAGTTTTGTTGGTGATGGGGAGATCAGAGAACACTATGTTAGAATAAACAGATGGCCACGAATGTTTGTGTCAAGGAATGAAGATTGGAGCTGGAGGATGTCTAATCACTTCACCTCCTACTCGAGCATAGCCGATCCTGACAAGGCTGGCGGGACAGGTCCACTTTAACAGCAGCTGGTGATCAAATTGCTTGTTTGCTCTTTCTTCTAGAGGCTGCTGTTTTGCTCTTTGTACAGAATTCTTGGGAATATAGTATAGGGAAGGAATTGGTGATAATTTTGGTTGGATCACATGTTTGTTTGGTCCTTTGCCTAAAAATGGGAGTAGCTTCGTATGTTTCTAGGATTTCCTTATTGTTACTGTTAGTTTTTTCCTTGAGAGAATGTATTTAATTAGATGGTTGCTTACTAGCAGGTAGTAAGATTTGAAATTAATAAGTTGAGTTTGTTTTTCTTAAGTTACATATCTGTTAAATGTTATAAAAATAATTAGATAGGAAGTTA

Coding sequence (CDS)

ATGGCGCAAAGCGACTTCCTCGACGGCGGAGCTCGGTGGAAAACTAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCGAGAGACTGTCTCCGATGAACGAGGGCAACAAAATAGAAGAACCGGAAATCCTATTCTCCAAGATCCTTTTGAGGTTTTAGGCTCTGATCTATTAATGATTATACTGAGCTACCTCGATGCACGCAGCGTGGCACTTTCTCTCCTTGTCTCTCGATCTTGGTACGCCGTTGCTTCAAGCGATCGTCTATGGAGTTCGAAGACTCGCATTATGAGGGAGGATTTATGTGATCATGCCTGGCAATTTCACTTCAATAAGGAAGCTCCAGTATACTGGCGAGATCTTGATCCATATTGGCAAGGAAGCCACCCTCTCATGCGCCGTTATTTCCATCCCGATGGGAGCCAAACTGCAGATCCTGATGATAGAGTATGGGGTGGTCATGAAAGCTGCTTTTCTACTGTTACAAGTTTTGTTGGTGATGGGGAGATCAGAGAACACTATGTTAGAATAAACAGATGGCCACGAATGTTTGTGTCAAGGAATGAAGATTGGAGCTGGAGGATGTCTAATCACTTCACCTCCTACTCGAGCATAGCCGATCCTGACAAGGCTGGCGGGACAGGTCCACTTTAA

Protein sequence

MAQSDFLDGGARWKTRKKKKKKKKKKKKRETVSDERGQQNRRTGNPILQDPFEVLGSDLLMIILSYLDARSVALSLLVSRSWYAVASSDRLWSSKTRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFVGDGEIREHYVRINRWPRMFVSRNEDWSWRMSNHFTSYSSIADPDKAGGTGPL

Homology

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BLAST of MELO3C006351.2.1 vs. NCBI nr
Match: XP_008438424.1 (PREDICTED: uncharacterized protein LOC103483521 isoform X2 [Cucumis melo])

HSP 1 Score: 415.2 bits (1066), Expect = 1.4e-112
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0


Query: 1   MAQSDFLDGGARWKTXXXXXXXXXXXXXXXXXXXXXXQQNRRTGNPILQDPFEVLGSDLL 60
           MAQSDFLDGGARWKTXXXXXXXXXXXXXXXXXXXXXXQQNRRTGNPILQDPFEVLGSDLL
Sbjct: 1   MAQSDFLDGGARWKTXXXXXXXXXXXXXXXXXXXXXXQQNRRTGNPILQDPFEVLGSDLL 60

Query: 61  MIILSYLDARSVALSLLVSRSWYAVASSDRLWSSKTRIMREDLCDHAWQFHFNKEAPVYW 120
           MIILSYLDARSVALSLLVSRSWYAVASSDRLWSSKTRIMREDLCDHAWQFHFNKEAPVYW
Sbjct: 61  MIILSYLDARSVALSLLVSRSWYAVASSDRLWSSKTRIMREDLCDHAWQFHFNKEAPVYW 120

Query: 121 RDLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFVGDGEIREHYVRIN 180
           RDLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFVGDGEIREHYVRIN
Sbjct: 121 RDLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFVGDGEIREHYVRIN 180

Query: 181 RWPRMFVSRNEDWSWRMSNHFTSYSSIADPDKAGGTGPL 220
           RWPRMFVSRNEDWSWRMSNHFTSYSSIADPDKAGGTGPL
Sbjct: 181 RWPRMFVSRNEDWSWRMSNHFTSYSSIADPDKAGGTGPL 219

[Close]

BLAST of MELO3C006351.2.1 vs. NCBI nr
Match: XP_008438422.1 (PREDICTED: uncharacterized protein LOC103483521 isoform X1 [Cucumis melo])

HSP 1 Score: 397.5 bits (1020), Expect = 2.9e-107
Identity = 219/254 (86.22%), Postives = 219/254 (86.22%), Query Frame = 0


Query: 1   MAQSDFLDGGARWKTXXXXXXXXXXXXXXXXXXXXXXQQNRRTGNPILQDPFEVLGSDLL 60
           MAQSDFLDGGARWKTXXXXXXXXXXXXXXXXXXXXXXQQNRRTGNPILQDPFEVLGSDLL
Sbjct: 1   MAQSDFLDGGARWKTXXXXXXXXXXXXXXXXXXXXXXQQNRRTGNPILQDPFEVLGSDLL 60

Query: 61  MIILSYLDARSVALSLLVSRSWYAVASSDRLWSSK------------------------- 120
           MIILSYLDARSVALSLLVSRSWYAVASSDRLWSSK                         
Sbjct: 61  MIILSYLDARSVALSLLVSRSWYAVASSDRLWSSKCLELWLGKAHIPRLAQSRGLPKLAA 120

Query: 121 ----------TRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGSQT 180
                     TRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGSQT
Sbjct: 121 YSLSIMDGKRTRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGSQT 180

Query: 181 ADPDDRVWGGHESCFSTVTSFVGDGEIREHYVRINRWPRMFVSRNEDWSWRMSNHFTSYS 220
           ADPDDRVWGGHESCFSTVTSFVGDGEIREHYVRINRWPRMFVSRNEDWSWRMSNHFTSYS
Sbjct: 181 ADPDDRVWGGHESCFSTVTSFVGDGEIREHYVRINRWPRMFVSRNEDWSWRMSNHFTSYS 240

[Close]

BLAST of MELO3C006351.2.1 vs. NCBI nr
Match: XP_004134025.1 (PREDICTED: uncharacterized protein LOC101220252 isoform X2 [Cucumis sativus])

HSP 1 Score: 389.4 bits (999), Expect = 7.9e-105
Identity = 191/219 (87.21%), Postives = 197/219 (89.95%), Query Frame = 0


Query: 1   MAQSDFLDGGARWKTXXXXXXXXXXXXXXXXXXXXXXQQNRRTGNPILQDPFEVLGSDLL 60
           MAQSDFL GGARWK+        XXXXXX        QQN +T NP+LQDPFEVLGSDLL
Sbjct: 1   MAQSDFLGGGARWKS-------RXXXXXXETVSDERGQQNSKTRNPLLQDPFEVLGSDLL 60

Query: 61  MIILSYLDARSVALSLLVSRSWYAVASSDRLWSSKTRIMREDLCDHAWQFHFNKEAPVYW 120
           + ILSYLDARSVALSL VSRSWYAVASSDRLWSSKTRIMREDLCDHAWQFHFNKEAPVYW
Sbjct: 61  LAILSYLDARSVALSLPVSRSWYAVASSDRLWSSKTRIMREDLCDHAWQFHFNKEAPVYW 120

Query: 121 RDLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFVGDGEIREHYVRIN 180
           RDLDPYWQGSHPLMRRYFHPDG+QTADPDDRVWGGHESCFSTVTSFVGDGEIREHYVRIN
Sbjct: 121 RDLDPYWQGSHPLMRRYFHPDGTQTADPDDRVWGGHESCFSTVTSFVGDGEIREHYVRIN 180

Query: 181 RWPRMFVSRNEDWSWRMSNHFTSYSSIADPDKAGGTGPL 220
           RWPRMFVSRNEDWSWRMSNHFTSYSSIADP+K GGTGPL
Sbjct: 181 RWPRMFVSRNEDWSWRMSNHFTSYSSIADPEKTGGTGPL 212

[Close]

BLAST of MELO3C006351.2.1 vs. NCBI nr
Match: XP_004134023.1 (PREDICTED: uncharacterized protein LOC101220252 isoform X1 [Cucumis sativus] >KGN56785.1 hypothetical protein Csa_3G133360 [Cucumis sativus])

HSP 1 Score: 371.7 bits (953), Expect = 1.7e-99
Identity = 191/254 (75.20%), Postives = 197/254 (77.56%), Query Frame = 0


Query: 1   MAQSDFLDGGARWKTXXXXXXXXXXXXXXXXXXXXXXQQNRRTGNPILQDPFEVLGSDLL 60
           MAQSDFL GGARWK+        XXXXXX        QQN +T NP+LQDPFEVLGSDLL
Sbjct: 1   MAQSDFLGGGARWKS-------RXXXXXXETVSDERGQQNSKTRNPLLQDPFEVLGSDLL 60

Query: 61  MIILSYLDARSVALSLLVSRSWYAVASSDRLWSSK------------------------- 120
           + ILSYLDARSVALSL VSRSWYAVASSDRLWSSK                         
Sbjct: 61  LAILSYLDARSVALSLPVSRSWYAVASSDRLWSSKCMELWLGKAHIPRLAQSRGLPKLAA 120

Query: 121 ----------TRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGSQT 180
                     TRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDG+QT
Sbjct: 121 YSLSVMDGKRTRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGTQT 180

Query: 181 ADPDDRVWGGHESCFSTVTSFVGDGEIREHYVRINRWPRMFVSRNEDWSWRMSNHFTSYS 220
           ADPDDRVWGGHESCFSTVTSFVGDGEIREHYVRINRWPRMFVSRNEDWSWRMSNHFTSYS
Sbjct: 181 ADPDDRVWGGHESCFSTVTSFVGDGEIREHYVRINRWPRMFVSRNEDWSWRMSNHFTSYS 240

[Close]

BLAST of MELO3C006351.2.1 vs. NCBI nr
Match: XP_022157960.1 (uncharacterized protein LOC111024557 isoform X2 [Momordica charantia])

HSP 1 Score: 338.2 bits (866), Expect = 2.1e-89
Identity = 164/220 (74.55%), Postives = 173/220 (78.64%), Query Frame = 0


Query: 1   MAQSDFLDGGARWKTXXXXXXXXXXXXXXXXXXXXXXQQNRRTGNPILQDPFEVLGSDLL 60
           M Q+D L GGA WKT                      +    + N +LQDP +VLG DLL
Sbjct: 26  MVQTDGLGGGAHWKT---------RKKKKPENVSDERRLENGSENVLLQDPLQVLGPDLL 85

Query: 61  MIILSYLDARSVALSLLVSRSWYAVASSDRLWSSKTRIMREDLCDHAWQFHFNKEAPVYW 120
           M IL Y+DARSVALSLLVSRSWYAVASSDRLWSSKTRIMREDLCDHAWQFHFNKEAPVYW
Sbjct: 86  MAILGYVDARSVALSLLVSRSWYAVASSDRLWSSKTRIMREDLCDHAWQFHFNKEAPVYW 145

Query: 121 RDLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFVG-DGEIREHYVRI 180
           RDLDPYWQGS PLMRRYFHPDGSQTADPDDRVWGGHE CFS VTSF G DG+IREHYVRI
Sbjct: 146 RDLDPYWQGSRPLMRRYFHPDGSQTADPDDRVWGGHECCFSVVTSFAGDDGKIREHYVRI 205

Query: 181 NRWPRMFVSRNEDWSWRMSNHFTSYSSIADPDKAGGTGPL 220
           NRWPRM VSRNEDWSW++SN   SYSSIAD DK GGTGPL
Sbjct: 206 NRWPRMLVSRNEDWSWKLSNQLASYSSIADADKDGGTGPL 236

[Close]

BLAST of MELO3C006351.2.1 vs. TrEMBL
Match: tr|A0A1S3AW05|A0A1S3AW05_CUCME (uncharacterized protein LOC103483521 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483521 PE=4 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 8.9e-113
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0


Query: 1   MAQSDFLDGGARWKTXXXXXXXXXXXXXXXXXXXXXXQQNRRTGNPILQDPFEVLGSDLL 60
           MAQSDFLDGGARWKTXXXXXXXXXXXXXXXXXXXXXXQQNRRTGNPILQDPFEVLGSDLL
Sbjct: 1   MAQSDFLDGGARWKTXXXXXXXXXXXXXXXXXXXXXXQQNRRTGNPILQDPFEVLGSDLL 60

Query: 61  MIILSYLDARSVALSLLVSRSWYAVASSDRLWSSKTRIMREDLCDHAWQFHFNKEAPVYW 120
           MIILSYLDARSVALSLLVSRSWYAVASSDRLWSSKTRIMREDLCDHAWQFHFNKEAPVYW
Sbjct: 61  MIILSYLDARSVALSLLVSRSWYAVASSDRLWSSKTRIMREDLCDHAWQFHFNKEAPVYW 120

Query: 121 RDLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFVGDGEIREHYVRIN 180
           RDLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFVGDGEIREHYVRIN
Sbjct: 121 RDLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFVGDGEIREHYVRIN 180

Query: 181 RWPRMFVSRNEDWSWRMSNHFTSYSSIADPDKAGGTGPL 220
           RWPRMFVSRNEDWSWRMSNHFTSYSSIADPDKAGGTGPL
Sbjct: 181 RWPRMFVSRNEDWSWRMSNHFTSYSSIADPDKAGGTGPL 219

[Close]

BLAST of MELO3C006351.2.1 vs. TrEMBL
Match: tr|A0A1S3AWZ4|A0A1S3AWZ4_CUCME (uncharacterized protein LOC103483521 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483521 PE=4 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 1.9e-107
Identity = 219/254 (86.22%), Postives = 219/254 (86.22%), Query Frame = 0


Query: 1   MAQSDFLDGGARWKTXXXXXXXXXXXXXXXXXXXXXXQQNRRTGNPILQDPFEVLGSDLL 60
           MAQSDFLDGGARWKTXXXXXXXXXXXXXXXXXXXXXXQQNRRTGNPILQDPFEVLGSDLL
Sbjct: 1   MAQSDFLDGGARWKTXXXXXXXXXXXXXXXXXXXXXXQQNRRTGNPILQDPFEVLGSDLL 60

Query: 61  MIILSYLDARSVALSLLVSRSWYAVASSDRLWSSK------------------------- 120
           MIILSYLDARSVALSLLVSRSWYAVASSDRLWSSK                         
Sbjct: 61  MIILSYLDARSVALSLLVSRSWYAVASSDRLWSSKCLELWLGKAHIPRLAQSRGLPKLAA 120

Query: 121 ----------TRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGSQT 180
                     TRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGSQT
Sbjct: 121 YSLSIMDGKRTRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGSQT 180

Query: 181 ADPDDRVWGGHESCFSTVTSFVGDGEIREHYVRINRWPRMFVSRNEDWSWRMSNHFTSYS 220
           ADPDDRVWGGHESCFSTVTSFVGDGEIREHYVRINRWPRMFVSRNEDWSWRMSNHFTSYS
Sbjct: 181 ADPDDRVWGGHESCFSTVTSFVGDGEIREHYVRINRWPRMFVSRNEDWSWRMSNHFTSYS 240

[Close]

BLAST of MELO3C006351.2.1 vs. TrEMBL
Match: tr|A0A0A0L471|A0A0A0L471_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G133360 PE=4 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 1.1e-99
Identity = 191/254 (75.20%), Postives = 197/254 (77.56%), Query Frame = 0


Query: 1   MAQSDFLDGGARWKTXXXXXXXXXXXXXXXXXXXXXXQQNRRTGNPILQDPFEVLGSDLL 60
           MAQSDFL GGARWK+        XXXXXX        QQN +T NP+LQDPFEVLGSDLL
Sbjct: 1   MAQSDFLGGGARWKS-------RXXXXXXETVSDERGQQNSKTRNPLLQDPFEVLGSDLL 60

Query: 61  MIILSYLDARSVALSLLVSRSWYAVASSDRLWSSK------------------------- 120
           + ILSYLDARSVALSL VSRSWYAVASSDRLWSSK                         
Sbjct: 61  LAILSYLDARSVALSLPVSRSWYAVASSDRLWSSKCMELWLGKAHIPRLAQSRGLPKLAA 120

Query: 121 ----------TRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGSQT 180
                     TRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDG+QT
Sbjct: 121 YSLSVMDGKRTRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGTQT 180

Query: 181 ADPDDRVWGGHESCFSTVTSFVGDGEIREHYVRINRWPRMFVSRNEDWSWRMSNHFTSYS 220
           ADPDDRVWGGHESCFSTVTSFVGDGEIREHYVRINRWPRMFVSRNEDWSWRMSNHFTSYS
Sbjct: 181 ADPDDRVWGGHESCFSTVTSFVGDGEIREHYVRINRWPRMFVSRNEDWSWRMSNHFTSYS 240

[Close]

BLAST of MELO3C006351.2.1 vs. TrEMBL
Match: tr|A0A2N9J216|A0A2N9J216_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58365 PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 7.7e-72
Identity = 124/171 (72.51%), Postives = 146/171 (85.38%), Query Frame = 0


Query: 49  QDPFEVLGSDLLMIILSYLDARSVALSLLVSRSWYAVASSDRLWSSKTRIMREDLCDHAW 108
           +DP EV G+D+++ ILS LDARSVAL LLVSR+W+AVASSDRLW+ K RIM++DLCDH W
Sbjct: 51  KDPLEVFGTDIMLKILSNLDARSVALCLLVSRAWHAVASSDRLWAPKNRIMKDDLCDHVW 110

Query: 109 QFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFVG 168
           +FHFNK AP YWR+LDPYW+G+   MRRYFHPDGSQ+ADP D+VWGGHE C+ TVTS VG
Sbjct: 111 EFHFNKAAPEYWRNLDPYWKGTGRPMRRYFHPDGSQSADPGDKVWGGHECCYLTVTSIVG 170

Query: 169 DGEIREHYVRINRWPRMFVSRNEDWSWRMSNHFTSYSSIADPDKAGGTGPL 220
           +G+IREHYVRINRWPRM VSR +DWSW +SN+  SYSSI D DK GGTGPL
Sbjct: 171 EGKIREHYVRINRWPRMSVSRKQDWSWELSNYLYSYSSIPDADKEGGTGPL 221

[Close]

BLAST of MELO3C006351.2.1 vs. TrEMBL
Match: tr|A0A2P2KYG2|A0A2P2KYG2_RHIMU (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 8.5e-71
Identity = 125/173 (72.25%), Postives = 141/173 (81.50%), Query Frame = 0


Query: 47  ILQDPFEVLGSDLLMIILSYLDARSVALSLLVSRSWYAVASSDRLWSSKTRIMREDLCDH 106
           +LQDP EVLG DL+M I S +DARSVALSL+VSRSW+ VA SD LWS K RI R+DLCDH
Sbjct: 83  LLQDPLEVLGRDLMMKIFSNVDARSVALSLVVSRSWHGVACSDSLWSLKNRITRDDLCDH 142

Query: 107 AWQFHFNKEAPVYWRDLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSF 166
            W+FHF K APVYWR+LDPYW+G+ PLMRRYFHPDGS TAD  DRVWGGHE C+S VTSF
Sbjct: 143 VWEFHFTKTAPVYWRNLDPYWKGTGPLMRRYFHPDGSLTADTGDRVWGGHECCYSIVTSF 202

Query: 167 VGDGEIREHYVRINRWPRMFVSRNEDWSWRMSNHFTSYSSIADPDKAGGTGPL 220
           VG+G+IREHYVR+NRWP+M + R EDWSW MSN    YSSI D  K GGTGPL
Sbjct: 203 VGNGKIREHYVRVNRWPQMTIRRKEDWSWEMSNSIYCYSSIPDAHKEGGTGPL 255

The following BLAST results are available for this feature:

BLAST of MELO3C006351.2.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008438424.1	1.4e-112	100.00	PREDICTED: uncharacterized protein LOC103483521 isoform X2 [Cucumis melo]	[more]
XP_008438422.1	2.9e-107	86.22	PREDICTED: uncharacterized protein LOC103483521 isoform X1 [Cucumis melo]	[more]
XP_004134025.1	7.9e-105	87.21	PREDICTED: uncharacterized protein LOC101220252 isoform X2 [Cucumis sativus]	[more]
XP_004134023.1	1.7e-99	75.20	PREDICTED: uncharacterized protein LOC101220252 isoform X1 [Cucumis sativus] >KG...	[more]
XP_022157960.1	2.1e-89	74.55	uncharacterized protein LOC111024557 isoform X2 [Momordica charantia]	[more]

BLAST of MELO3C006351.2.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C006351.2.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C006351.2.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AW05\|A0A1S3AW05_CUCME	8.9e-113	100.00	uncharacterized protein LOC103483521 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3AWZ4\|A0A1S3AWZ4_CUCME	1.9e-107	86.22	uncharacterized protein LOC103483521 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0L471\|A0A0A0L471_CUCSA	1.1e-99	75.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G133360 PE=4 SV=1	[more]
tr\|A0A2N9J216\|A0A2N9J216_FAGSY	7.7e-72	72.51	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58365 PE=4 SV=1	[more]
tr\|A0A2P2KYG2\|A0A2P2KYG2_RHIMU	8.5e-71	72.25	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036047	F-box-like_dom_sf
IPR001810	F-box_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009740	gibberellic acid mediated signaling pathway
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0010162	seed dormancy process
biological_process	GO:0009845	seed germination
cellular_component	GO:0005634	nucleus
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C006351.2	MELO3C006351.2	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C006351.2.1	MELO3C006351.2.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C006351.2.1.five_prime_UTR.1	MELO3C006351.2.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C006351.2.1.exon.3	MELO3C006351.2.1.exon.3	exon
MELO3C006351.2.1.exon.2	MELO3C006351.2.1.exon.2	exon
MELO3C006351.2.1.exon.1	MELO3C006351.2.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C006351.2.1.CDS.3	MELO3C006351.2.1.CDS.3	CDS
MELO3C006351.2.1.CDS.2	MELO3C006351.2.1.CDS.2	CDS
MELO3C006351.2.1.CDS.1	MELO3C006351.2.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C006351.2.1.three_prime_UTR.1	MELO3C006351.2.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:1.20.1280.50		coord: 39..93 e-value: 4.8E-10 score: 41.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..29
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 51..94 e-value: 7.1E-7 score: 28.9
IPR036047	F-box-like domain superfamily	SUPERFAMILY	SSF81383	F-box domain	coord: 181..196 coord: 49..129