MELO3C006167.2.1 (mRNA) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C006167.2.1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr06 : 1424697 .. 1425190 (+)
Sequence length	494

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAAACACGTGTCTAAATCTTATCGGAATGCGTTTTGGACAGCTTGCTTCTGTGTAGCTACCAGCTAAGCATTAATCCAAAAAATGAAAATCCATACTTGGAAGCATCGATGAAACTTCCTCTGAGTTTGGAGTCTTGACGAATCAAATATCTCCCCGCCATGAAACCCACCGTCGATTAAATCGGCCTGGCGGCGTAGCCATTCTAGGGCTTCAAGGGCGTCATTGTAGGCAGCAGGGAGACGGTGTTCGGGGGCGAGGCGGTACTCCAAAGACATGATTAGGGCTGGAAGATGAGCGAAAATGCGGCAACAAGAAATGTGAAATGGCTGTGTGGCTGCGCTGAAGGTCTGGTGATTGAGCCATCTAGGTTTAGCTTGATGTTGAGACGCTCGAAAGGATCAATAATGGAGGTTGTTGAAGTTGCAAAGAGGGATTCCGTCATTGGAGATGGAGAAGAAAGTGAATGGTTTTGGTTGTGGGCTGAGAATTAG

mRNA sequence

AATAAACACGTGTCTAAATCTTATCGGAATGCGTTTTGGACAGCTTGCTTCTGTGTAGCTACCAGCTAAGCATTAATCCAAAAAATGAAAATCCATACTTGGAAGCATCGATGAAACTTCCTCTGAGTTTGGAGTCTTGACGAATCAAATATCTCCCCGCCATGAAACCCACCGTCGATTAAATCGGCCTGGCGGCGTAGCCATTCTAGGGCTTCAAGGGCGTCATTGTAGGCAGCAGGGAGACGGTGTTCGGGGGCGAGGCGGTACTCCAAAGACATGATTAGGGCTGGAAGATGAGCGAAAATGCGGCAACAAGAAATGTGAAATGGCTGTGTGGCTGCGCTGAAGGTCTGGTGATTGAGCCATCTAGGTTTAGCTTGATGTTGAGACGCTCGAAAGGATCAATAATGGAGGTTGTTGAAGTTGCAAAGAGGGATTCCGTCATTGGAGATGGAGAAGAAAGTGAATGGTTTTGGTTGTGGGCTGAGAATTAG

Coding sequence (CDS)

ATGAGCGAAAATGCGGCAACAAGAAATGTGAAATGGCTGTGTGGCTGCGCTGAAGGTCTGGTGATTGAGCCATCTAGGTTTAGCTTGATGTTGAGACGCTCGAAAGGATCAATAATGGAGGTTGTTGAAGTTGCAAAGAGGGATTCCGTCATTGGAGATGGAGAAGAAAGTGAATGGTTTTGGTTGTGGGCTGAGAATTAG

Protein sequence

MSENAATRNVKWLCGCAEGLVIEPSRFSLMLRRSKGSIMEVVEVAKRDSVIGDGEESEWFWLWAEN

Homology

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BLAST of MELO3C006167.2.1 vs. NCBI nr
Match: KGN56575.1 (hypothetical protein Csa_3G124930 [Cucumis sativus])

HSP 1 Score: 93.2 bits (230), Expect = 3.5e-16
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 19 GLVIEPSRFSLMLRRSKGSIMEVVEVAKRDSVIGDGEESEWFWLWAEN 67
          GLVI+PS FSLMLR SKGSIMEVVEVAKRDSVIGDGEESEWFW WAEN
Sbjct: 14 GLVIQPSEFSLMLRHSKGSIMEVVEVAKRDSVIGDGEESEWFWWWAEN 61

[Close]

BLAST of MELO3C006167.2.1 vs. TrEMBL
Match: tr|A0A0A0L3R3|A0A0A0L3R3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G124930 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.3e-16
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 19 GLVIEPSRFSLMLRRSKGSIMEVVEVAKRDSVIGDGEESEWFWLWAEN 67
          GLVI+PS FSLMLR SKGSIMEVVEVAKRDSVIGDGEESEWFW WAEN
Sbjct: 14 GLVIQPSEFSLMLRHSKGSIMEVVEVAKRDSVIGDGEESEWFWWWAEN 61

The following BLAST results are available for this feature:

BLAST of MELO3C006167.2.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56575.1	3.5e-16	91.67	hypothetical protein Csa_3G124930 [Cucumis sativus]	[more]

BLAST of MELO3C006167.2.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C006167.2.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C006167.2.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L3R3\|A0A0A0L3R3_CUCSA	2.3e-16	91.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G124930 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C006167.2	MELO3C006167.2	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C006167.2.1.five_prime_UTR.1	MELO3C006167.2.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C006167.2.1.exon.1	MELO3C006167.2.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C006167.2.1.CDS.1	MELO3C006167.2.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C006167.2.1	MELO3C006167.2.1-protein	polypeptide