MELO3C006160T2 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C006160T2
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Histone deacetylase complex subunit SAP18
Location	chr6 : 1402590 .. 1405041 (+)
Sequence length	792

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAGAAGTTGAAACTTGAAGAATACTTCGAGAGAAATGGCGGGAGAAGCTGAAGCACCAAGGAGGGCTTATGGCGCTCCTCCAAGAGCAACTCATGCTCCTCCTCGTCCTCGTTTGGAGCCTGTTGATCGAGAAAAGGTTTCTCTCTTTCTCTTCTCTATTTTTAGGGTTTCTAATTCTATCCCTTCTAGCGTTGTCTCTGATTTTCAATTTTGGTGTTCATTAGCTTGTTCTTGAATCCACATTCAGATCAATCGTTTTCTTATTTATTTGTTCTAGAATTTCGTTGGAATCTCTTTATTTTGGTGCTTGTTACTTGAATCTCCGATTATTGCATTTTCGCTGCTCGTAGTGTTCGGAGCTGGCTGTGTAAATATAGATAGCAACTTTCATTCTCTATGTTGAGTAATTTCCTTTCTATTGCTGCAGACTTGTCCTTTGCTGCTTCGCGTTTTCACGAAGGTACGTCGTTTTTTTATGCTGGGTTTTGTTTTTGTGGATTTTGTTCCATATCTATTCAAAGTACCCAAAACAAGTGTGTTTCATCGACCTGGGAACCGTAGTTTAATCCAACCGATGTATTAGGGATGAAATGAAGTGCGTTGGGTGTCGAATTTGTGTGAAATGTTCGAATTTATGCCATTGTGTTGATAGATGGGGTTTAGGAATCTGATTAGAGGATAACTTAAAGCAAATTTCCGTGGTTTCGGGTGGCTACATTTAGGTTATGAGGAGTCTGGTTCTAAATAATGCTACACTTGGATAAGGAAGGGTAATATTGCTGTTTATTTTTTTTCTTTTCATATTTTTGGTAGATTGGGAGTCATCATTTCAATGAAGACTTCGCTGTGAGGGGCAAGGAGCCGAGGGATGAGGTTCAAATTTATACCTGGAAAGATGCTACTCTTCGCGAACTAACTGATCTGGTTGTATTTCTTATTCCTTTTTAACCTCTTCTCCCTCCACGCTTTGCATGACATAAATGCGACTGATCTGTATCTTTTTTAATGTATATCCATGATGCATTCGTAGAAACTATTTTCCATTTCATTGCTCCTTGATCTCATGTGTCTACTTTTCTTTCCATTTTGGGTGAGGGAGTTTACAGGTCAAAGAGGTAGCTCCAGAAGCCAGGAGGAGAAATGCTAAACTTTCCTTTGCTTTGGTTTATCCCGATAGACATGGTCGGTTTGTATTGAGAGAGGTGTATATTTTCTCTTCCCTTCTCCCACATATGTCATGCATATACACATATAATACAATGTTTTTAGGATGAACTAGGGAAACATTCTTGACACTTTTCTTTTTTACTTAGTTAAGTTTATCAATTTGAGCACCCAAGTTGAATAAGTGGTAAAATGAATTAATGCTGAACTGAAATCTTTTGTTCTAACCATACTGTCATCATGTCCTGCTGTAACTTGCAGTTTCTTTAGCCGCAAAGATTTTTCTGTGTAAAGGGCTTAAGTACGTGATATACTCGAATCCGTAATAAATTTCCCAGAATTCATTGACCTCATCTGTAATTTACGTTTACAAATATATGAAGAAAGCGAATTTCGAGTTCTATAGTAGATATGACTAGTTACCATTTTGGAGGTTGATGGTTTGTTCTTCATCCATCTAATTGTTGTGGTGTGGATCCCTCATCAAACACATGGATTACTATTCTCATTCACAACTAATTTTGCGATAGAATCTTATATTTATCTAATTATTTATCATATCTTAGGAAGCCTAAATGAATATTTGGTCTAAATCATTGAGGGGTATGTGAGGATCTCATCCCATGTGGGACAAACGAAGAAATCTCATCATCTTTACTTGATACATTTTCTCATTACCCGTTGGTTTGAGGATAGAAATACATGCTTATGTAATGTATTGAACTAAAAAAAACTAGCTTGAGTCATACAGATTCTGTTTCTTCATTTGAAGGTAGGGAAGACATTCTCGTTTGGAAATAGACGATTAGACGATAGCTTGGCTTTGGGAGAACTTGGTTTTCAGGTAAAACAAAGCATGGCTTTCTTTTTTGCCTTATCAATCCTGTATTCCTTATCAAACTTGGTGCAATTCTTCCCACGCAGATTGGAGATTACTTGGACGTGGCAATCATATAGGGTATGTGGTGCGTTTATATACTAATAATTTGCCTATGGTGAAGAACAAAAAGAATGAGGATATTAACTTCAATCTTGTAATGTATATTCCATTTAAGAATTGGTCGAAAATCCTTTACCTTGTATGTTTTCTTCCCCTGTGCCATATGAGGTAGATCGTGATAGTCATTGTCACGTTCCTTTGAGTTACCTTCTTGATGTATTGCATCAGATGAACCGGGCCATATAATAGAGTTTTCGTTGGGACGATAATGGTGGAACTATTTTAGGCCCTATGGTTTCATTAACATGAGTTTTTCTTTACAAAAATCAAAGTCTTTGTTGCATGCG

mRNA sequence

GCAGAAGTTGAAACTTGAAGAATACTTCGAGAGAAATGGCGGGAGAAGCTGAAGCACCAAGGAGGGCTTATGGCGCTCCTCCAAGAGCAACTCATGCTCCTCCTCGTCCTCGTTTGGAGCCTGTTGATCGAGAAAAGACTTGTCCTTTGCTGCTTCGCGTTTTCACGAAGATTGGGAGTCATCATTTCAATGAAGACTTCGCTGTGAGGGGCAAGGAGCCGAGGGATGAGGTTCAAATTTATACCTGGAAAGATGCTACTCTTCGCGAACTAACTGATCTGGTCAAAGAGGTAGCTCCAGAAGCCAGGAGGAGAAATGCTAAACTTTCCTTTGCTTTGGTTTATCCCGATAGACATGGTAGGGAAGACATTCTCGTTTGGAAATAGACGATTAGACGATAGCTTGGCTTTGGGAGAACTTGGTTTTCAGATTGGAGATTACTTGGACGTGGCAATCATATAGGGTATGTGGTGCGTTTATATACTAATAATTTGCCTATGGTGAAGAACAAAAAGAATGAGGATATTAACTTCAATCTTGTAATGTATATTCCATTTAAGAATTGGTCGAAAATCCTTTACCTTGTATGTTTTCTTCCCCTGTGCCATATGAGGTAGATCGTGATAGTCATTGTCACGTTCCTTTGAGTTACCTTCTTGATGTATTGCATCAGATGAACCGGGCCATATAATAGAGTTTTCGTTGGGACGATAATGGTGGAACTATTTTAGGCCCTATGGTTTCATTAACATGAGTTTTTCTTTACAAAAATCAAAGTCTTTGTTGCATGCG

Coding sequence (CDS)

ATGGCGGGAGAAGCTGAAGCACCAAGGAGGGCTTATGGCGCTCCTCCAAGAGCAACTCATGCTCCTCCTCGTCCTCGTTTGGAGCCTGTTGATCGAGAAAAGACTTGTCCTTTGCTGCTTCGCGTTTTCACGAAGATTGGGAGTCATCATTTCAATGAAGACTTCGCTGTGAGGGGCAAGGAGCCGAGGGATGAGGTTCAAATTTATACCTGGAAAGATGCTACTCTTCGCGAACTAACTGATCTGGTCAAAGAGGTAGCTCCAGAAGCCAGGAGGAGAAATGCTAAACTTTCCTTTGCTTTGGTTTATCCCGATAGACATGGTAGGGAAGACATTCTCGTTTGGAAATAG

Protein sequence

MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGREDILVWK*

Homology

[Close]

BLAST of MELO3C006160T2 vs. Swiss-Prot
Match: SAP18_ARATH (Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana GN=At2g45640 PE=1 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 4.3e-37
Identity = 79/110 (71.82%), Postives = 86/110 (78.18%), Query Frame = 1


Query: 5   AEAPRRAYGA-----PPRATHA-PPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVR 64
           AEA RR  G      PPR  +  PPRP+ EPVDREKTCPLLLRVFTK G HH +ED+AVR
Sbjct: 2   AEAARRQGGGRPLPPPPRGVNQQPPRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDYAVR 61

Query: 65  GKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHG 109
           GKEP+DEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LSFA VYP+  G
Sbjct: 62  GKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKG 111

[Close]

BLAST of MELO3C006160T2 vs. Swiss-Prot
Match: SAP18_BOVIN (Histone deacetylase complex subunit SAP18 OS=Bos taurus GN=SAP18 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.1e-19
Identity = 46/78 (58.97%), Postives = 53/78 (67.95%), Query Frame = 1


Query: 28  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVA 87
           +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 88  PEARRRNAKLSFALVYPD 106
           PEAR++    +FA+V+ D
Sbjct: 78  PEARKKGTHFNFAIVFTD 95

[Close]

BLAST of MELO3C006160T2 vs. Swiss-Prot
Match: SAP18_HUMAN (Histone deacetylase complex subunit SAP18 OS=Homo sapiens GN=SAP18 PE=1 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.1e-19
Identity = 46/78 (58.97%), Postives = 53/78 (67.95%), Query Frame = 1


Query: 28  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVA 87
           +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 88  PEARRRNAKLSFALVYPD 106
           PEAR++    +FA+V+ D
Sbjct: 78  PEARKKGTHFNFAIVFTD 95

[Close]

BLAST of MELO3C006160T2 vs. Swiss-Prot
Match: SAP18_PONAB (Histone deacetylase complex subunit SAP18 OS=Pongo abelii GN=SAP18 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.1e-19
Identity = 46/78 (58.97%), Postives = 53/78 (67.95%), Query Frame = 1


Query: 28  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVA 87
           +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 88  PEARRRNAKLSFALVYPD 106
           PEAR++    +FA+V+ D
Sbjct: 78  PEARKKGTHFNFAIVFTD 95

[Close]

BLAST of MELO3C006160T2 vs. Swiss-Prot
Match: SAP18_MOUSE (Histone deacetylase complex subunit SAP18 OS=Mus musculus GN=Sap18 PE=1 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.4e-19
Identity = 46/78 (58.97%), Postives = 53/78 (67.95%), Query Frame = 1


Query: 28  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVA 87
           +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 88  PEARRRNAKLSFALVYPD 106
           PEAR++    +FA+V+ D
Sbjct: 78  PEARKKGTHFNFAIVFMD 95

[Close]

BLAST of MELO3C006160T2 vs. TrEMBL
Match: A0A0A0L6C9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G124880 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 8.5e-56
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 1


Query: 1   MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60
           MAGEAEAPRRAYG PPRATHAPPRPRLEPVDREKTCPLLLRVFTK GSHHFNEDFAVRGK
Sbjct: 1   MAGEAEAPRRAYGGPPRATHAPPRPRLEPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGK 60

Query: 61  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGR 110
           EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGR
Sbjct: 61  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGR 109

[Close]

BLAST of MELO3C006160T2 vs. TrEMBL
Match: M5X2P5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012935mg PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 4.4e-44
Identity = 88/108 (81.48%), Postives = 94/108 (87.04%), Query Frame = 1


Query: 1   MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60
           MAG A+AP+RA     R   +PPRPR  PVDREKTCPLLLRVFTK+GSHH NEDFAVRGK
Sbjct: 1   MAGVAQAPKRALAPQGRGLRSPPRPRFAPVDREKTCPLLLRVFTKVGSHHTNEDFAVRGK 60

Query: 61  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHG 109
           EP+DEVQIYTWKDA LRELTDLVKEVAP ARRRNAKLSFA+VYPDRHG
Sbjct: 61  EPKDEVQIYTWKDANLRELTDLVKEVAPAARRRNAKLSFAIVYPDRHG 108

[Close]

BLAST of MELO3C006160T2 vs. TrEMBL
Match: U5GMH5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s11920g PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 6.9e-42
Identity = 86/102 (84.31%), Postives = 91/102 (89.22%), Query Frame = 1


Query: 8   PRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQ 67
           P RA+  PP     PPRPR+EP+DREKTCPLLLRVFTKIGSHH  EDFAVRGKEP+DEVQ
Sbjct: 26  PSRAHPPPP-----PPRPRIEPIDREKTCPLLLRVFTKIGSHHKPEDFAVRGKEPKDEVQ 85

Query: 68  IYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGR 110
           IYTWKDATLRELTDLVKEVAPEARRRNAKLSFA VYPD+HGR
Sbjct: 86  IYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKHGR 122

[Close]

BLAST of MELO3C006160T2 vs. TrEMBL
Match: A0A061DVR5_THECC (SIN3 associated polypeptide P18 OS=Theobroma cacao GN=TCM_005460 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.3e-40
Identity = 86/113 (76.11%), Postives = 93/113 (82.30%), Query Frame = 1


Query: 1   MAGEAEAPRRAYGAP----PRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFA 60
           MAG AEA +R  G P     R    PPRPR EPVDREKTCPLLLRVFTKIG HH  EDFA
Sbjct: 1   MAGAAEAQKRQSGRPLPPPARGPPPPPRPRFEPVDREKTCPLLLRVFTKIGGHHSKEDFA 60

Query: 61  VRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGR 110
           VRGKEP+DEVQIYTWKDATLRELTDLVKEVAP +RRR+A+LSFA VYPD++GR
Sbjct: 61  VRGKEPKDEVQIYTWKDATLRELTDLVKEVAPASRRRDARLSFAFVYPDKNGR 113

[Close]

BLAST of MELO3C006160T2 vs. TrEMBL
Match: M5WC77_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012467mg PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.7e-40
Identity = 85/101 (84.16%), Postives = 88/101 (87.13%), Query Frame = 1


Query: 8   PRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQ 67
           P  + G PP     PP PRLEPVDREKTCPLLLRVFTKIGSHH NEDFAVRGKEP+DEVQ
Sbjct: 32  PPHSRGPPP-----PPPPRLEPVDREKTCPLLLRVFTKIGSHHNNEDFAVRGKEPKDEVQ 91

Query: 68  IYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHG 109
           IYTWKDATLRELTDLVKE+APEARRRNAKLSFA VYPDR G
Sbjct: 92  IYTWKDATLRELTDLVKEIAPEARRRNAKLSFAFVYPDRRG 127

[Close]

BLAST of MELO3C006160T2 vs. TAIR10
Match: AT2G45640.1 (AT2G45640.1 SIN3 associated polypeptide P18)

HSP 1 Score: 155.2 bits (391), Expect = 2.4e-38
Identity = 79/110 (71.82%), Postives = 86/110 (78.18%), Query Frame = 1


Query: 5   AEAPRRAYGA-----PPRATHA-PPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVR 64
           AEA RR  G      PPR  +  PPRP+ EPVDREKTCPLLLRVFTK G HH +ED+AVR
Sbjct: 2   AEAARRQGGGRPLPPPPRGVNQQPPRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDYAVR 61

Query: 65  GKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHG 109
           GKEP+DEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LSFA VYP+  G
Sbjct: 62  GKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKG 111

[Close]

BLAST of MELO3C006160T2 vs. NCBI nr
Match: gi|659075396|ref|XP_008438121.1| (PREDICTED: histone deacetylase complex subunit SAP18 [Cucumis melo])

HSP 1 Score: 227.6 bits (579), Expect = 1.1e-56
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1


Query: 1   MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60
           MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK
Sbjct: 1   MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60

Query: 61  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGR 110
           EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGR
Sbjct: 61  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGR 109

[Close]

BLAST of MELO3C006160T2 vs. NCBI nr
Match: gi|449432217|ref|XP_004133896.1| (PREDICTED: histone deacetylase complex subunit SAP18 [Cucumis sativus])

HSP 1 Score: 224.2 bits (570), Expect = 1.2e-55
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 1


Query: 1   MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60
           MAGEAEAPRRAYG PPRATHAPPRPRLEPVDREKTCPLLLRVFTK GSHHFNEDFAVRGK
Sbjct: 1   MAGEAEAPRRAYGGPPRATHAPPRPRLEPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGK 60

Query: 61  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGR 110
           EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGR
Sbjct: 61  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGR 109

[Close]

BLAST of MELO3C006160T2 vs. NCBI nr
Match: gi|596010175|ref|XP_007218562.1| (hypothetical protein PRUPE_ppa012935mg [Prunus persica])

HSP 1 Score: 185.3 bits (469), Expect = 6.2e-44
Identity = 88/108 (81.48%), Postives = 94/108 (87.04%), Query Frame = 1


Query: 1   MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60
           MAG A+AP+RA     R   +PPRPR  PVDREKTCPLLLRVFTK+GSHH NEDFAVRGK
Sbjct: 1   MAGVAQAPKRALAPQGRGLRSPPRPRFAPVDREKTCPLLLRVFTKVGSHHTNEDFAVRGK 60

Query: 61  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHG 109
           EP+DEVQIYTWKDA LRELTDLVKEVAP ARRRNAKLSFA+VYPDRHG
Sbjct: 61  EPKDEVQIYTWKDANLRELTDLVKEVAPAARRRNAKLSFAIVYPDRHG 108

[Close]

BLAST of MELO3C006160T2 vs. NCBI nr
Match: gi|645253992|ref|XP_008232830.1| (PREDICTED: histone deacetylase complex subunit SAP18 [Prunus mume])

HSP 1 Score: 184.1 bits (466), Expect = 1.4e-43
Identity = 87/108 (80.56%), Postives = 94/108 (87.04%), Query Frame = 1


Query: 1   MAGEAEAPRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGK 60
           MAG A+AP+RA     R   +PPRPR  PVDREKTCPLLLRVFTK+GSHH NEDFAVRGK
Sbjct: 1   MAGVAQAPKRALAPQGRGPRSPPRPRFAPVDREKTCPLLLRVFTKVGSHHTNEDFAVRGK 60

Query: 61  EPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHG 109
           EP+DEVQIYTW+DA LRELTDLVKEVAP ARRRNAKLSFA+VYPDRHG
Sbjct: 61  EPKDEVQIYTWRDANLRELTDLVKEVAPAARRRNAKLSFAIVYPDRHG 108

[Close]

BLAST of MELO3C006160T2 vs. NCBI nr
Match: gi|566162238|ref|XP_006385749.1| (hypothetical protein POPTR_0003s11920g [Populus trichocarpa])

HSP 1 Score: 177.9 bits (450), Expect = 1.0e-41
Identity = 86/102 (84.31%), Postives = 91/102 (89.22%), Query Frame = 1


Query: 8   PRRAYGAPPRATHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQ 67
           P RA+  PP     PPRPR+EP+DREKTCPLLLRVFTKIGSHH  EDFAVRGKEP+DEVQ
Sbjct: 26  PSRAHPPPP-----PPRPRIEPIDREKTCPLLLRVFTKIGSHHKPEDFAVRGKEPKDEVQ 85

Query: 68  IYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGR 110
           IYTWKDATLRELTDLVKEVAPEARRRNAKLSFA VYPD+HGR
Sbjct: 86  IYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKHGR 122

The following BLAST results are available for this feature:

BLAST of MELO3C006160T2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SAP18_ARATH	4.3e-37	71.82	Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana GN=At2g45640 P...	[more]
SAP18_BOVIN	1.1e-19	58.97	Histone deacetylase complex subunit SAP18 OS=Bos taurus GN=SAP18 PE=2 SV=1	[more]
SAP18_HUMAN	1.1e-19	58.97	Histone deacetylase complex subunit SAP18 OS=Homo sapiens GN=SAP18 PE=1 SV=1	[more]
SAP18_PONAB	1.1e-19	58.97	Histone deacetylase complex subunit SAP18 OS=Pongo abelii GN=SAP18 PE=2 SV=1	[more]
SAP18_MOUSE	1.4e-19	58.97	Histone deacetylase complex subunit SAP18 OS=Mus musculus GN=Sap18 PE=1 SV=1	[more]

BLAST of MELO3C006160T2 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6C9_CUCSA	8.5e-56	98.17	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G124880 PE=4 SV=1	[more]
M5X2P5_PRUPE	4.4e-44	81.48	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012935mg PE=4 SV=1	[more]
U5GMH5_POPTR	6.9e-42	84.31	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s11920g PE=4 SV=1	[more]
A0A061DVR5_THECC	1.3e-40	76.11	SIN3 associated polypeptide P18 OS=Theobroma cacao GN=TCM_005460 PE=4 SV=1	[more]
M5WC77_PRUPE	1.7e-40	84.16	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012467mg PE=4 SV=1	[more]

BLAST of MELO3C006160T2 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G45640.1	2.4e-38	71.82	SIN3 associated polypeptide P18	[more]

BLAST of MELO3C006160T2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659075396\|ref\|XP_008438121.1\|	1.1e-56	100.00	PREDICTED: histone deacetylase complex subunit SAP18 [Cucumis melo]	[more]
gi\|449432217\|ref\|XP_004133896.1\|	1.2e-55	98.17	PREDICTED: histone deacetylase complex subunit SAP18 [Cucumis sativus]	[more]
gi\|596010175\|ref\|XP_007218562.1\|	6.2e-44	81.48	hypothetical protein PRUPE_ppa012935mg [Prunus persica]	[more]
gi\|645253992\|ref\|XP_008232830.1\|	1.4e-43	80.56	PREDICTED: histone deacetylase complex subunit SAP18 [Prunus mume]	[more]
gi\|566162238\|ref\|XP_006385749.1\|	1.0e-41	84.31	hypothetical protein POPTR_0003s11920g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR010516	SAP18

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009062	fatty acid catabolic process
biological_process	GO:0009651	response to salt stress
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C006160	MELO3C006160	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C006160T2.cds1	MELO3C006160T2.cds1	CDS
MELO3C006160T2.cds2	MELO3C006160T2.cds2	CDS
MELO3C006160T2.cds3	MELO3C006160T2.cds3	CDS
MELO3C006160T2.cds4	MELO3C006160T2.cds4	CDS
MELO3C006160T2.cds5	MELO3C006160T2.cds5	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C006160T2	MELO3C006160T2-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010516	Sin3 associated polypeptide p18	PANTHER	PTHR13082	SAP18	coord: 9..109 score: 1.5
IPR010516	Sin3 associated polypeptide p18	PFAM	PF06487	SAP18	coord: 29..109 score: 4.6
None	No IPR available	PANTHER	PTHR13082:SF0	HISTONE DEACETYLASE COMPLEX SUBUNIT SAP18	coord: 9..109 score: 1.5