MELO3C006065T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C006065T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Pentatricopeptide repeat superfamily protein, putative
Location	chr6 : 852978 .. 853283 (-)
Sequence length	306

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCTGCACTCGTGATCACATCATTAGTGGATTGTGTGAAAAAGGATGTGTGGTTGAGGGGATGGAGTGGTTGATAACTATGTTAAAGAGCAATCTCAAGCCTCAAAAGAAAACCTTTTGTAAGTTGATTCAGAGTCTCATTCAAATTGGTAAATTAGATGATTCTTTATCAATCATAGGCTCAATGTTTAGAGTTGGTTATAAACTAGAAGAAGGCATTCTCAGTCATCTCTTGGATAAACTATGTGAAAACAAGTATCATTTTGTTGAATCAAAATTAGAGGAAATTATAAATTCCAATTAG

mRNA sequence

ATGGTCTGCACTCGTGATCACATCATTAGTGGATTGTGTGAAAAAGGATGTGTGGTTGAGGGGATGGAGTGGTTGATAACTATGTTAAAGAGCAATCTCAAGCCTCAAAAGAAAACCTTTTGTAAGTTGATTCAGAGTCTCATTCAAATTGGTAAATTAGATGATTCTTTATCAATCATAGGCTCAATGTTTAGAGTTGGTTATAAACTAGAAGAAGGCATTCTCAGTCATCTCTTGGATAAACTATGTGAAAACAAGTATCATTTTGTTGAATCAAAATTAGAGGAAATTATAAATTCCAATTAG

Coding sequence (CDS)

ATGGTCTGCACTCGTGATCACATCATTAGTGGATTGTGTGAAAAAGGATGTGTGGTTGAGGGGATGGAGTGGTTGATAACTATGTTAAAGAGCAATCTCAAGCCTCAAAAGAAAACCTTTTGTAAGTTGATTCAGAGTCTCATTCAAATTGGTAAATTAGATGATTCTTTATCAATCATAGGCTCAATGTTTAGAGTTGGTTATAAACTAGAAGAAGGCATTCTCAGTCATCTCTTGGATAAACTATGTGAAAACAAGTATCATTTTGTTGAATCAAAATTAGAGGAAATTATAAATTCCAATTAG

Protein sequence

MVCTRDHIISGLCEKGCVVEGMEWLITMLKSNLKPQKKTFCKLIQSLIQIGKLDDSLSIIGSMFRVGYKLEEGILSHLLDKLCENKYHFVESKLEEIINSN*

Homology

[Close]

BLAST of MELO3C006065T1 vs. TrEMBL
Match: A0A061EPL5_THECC (Tetratricopeptide repeat-like superfamily protein, putative isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_021066 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-23
Identity = 56/101 (55.45%), Postives = 72/101 (71.29%), Query Frame = 1


Query: 1   MVCTRDHIISGLCEKGCVVEGMEWLITMLKSNLKPQKKTFCKLIQSLIQIGKLDDSLSII 60
           +VCT DH+I+GLCE+G V EGME L+ MLK+ LKP+K+TF KL+Q L Q  +LDDSL ++
Sbjct: 435 IVCTHDHVIAGLCEQGYVAEGMERLVEMLKNRLKPRKETFEKLVQCLSQSDRLDDSLLVL 494

Query: 61  GSMFRVGYKLEEGILSHLLDKLCENKYHFVESKLEEIINSN 102
             MFR+GY L  GI   L+ K CE   HFVES L E++  N
Sbjct: 495 DFMFRIGYALRNGICHSLVTKFCERNAHFVESCLGEVLEIN 535

[Close]

BLAST of MELO3C006065T1 vs. TrEMBL
Match: A0A061EN69_THECC (Tetratricopeptide repeat-like superfamily protein, putative isoform 1 OS=Theobroma cacao GN=TCM_021066 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-23
Identity = 56/101 (55.45%), Postives = 72/101 (71.29%), Query Frame = 1


Query: 1   MVCTRDHIISGLCEKGCVVEGMEWLITMLKSNLKPQKKTFCKLIQSLIQIGKLDDSLSII 60
           +VCT DH+I+GLCE+G V EGME L+ MLK+ LKP+K+TF KL+Q L Q  +LDDSL ++
Sbjct: 510 IVCTHDHVIAGLCEQGYVAEGMERLVEMLKNRLKPRKETFEKLVQCLSQSDRLDDSLLVL 569

Query: 61  GSMFRVGYKLEEGILSHLLDKLCENKYHFVESKLEEIINSN 102
             MFR+GY L  GI   L+ K CE   HFVES L E++  N
Sbjct: 570 DFMFRIGYALRNGICHSLVTKFCERNAHFVESCLGEVLEIN 610

[Close]

BLAST of MELO3C006065T1 vs. TrEMBL
Match: F6HDK3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g02440 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.2e-20
Identity = 50/100 (50.00%), Postives = 71/100 (71.00%), Query Frame = 1


Query: 2   VCTRDHIISGLCEKGCVVEGMEWLITMLKSNLKPQKKTFCKLIQSLIQIGKLDDSLSIIG 61
           VCT D +I+G C++GC +EGMEWL TML+S L+PQKK+F  LIQ L QI +LDD+L ++ 
Sbjct: 497 VCTHDFMITGFCKQGCAMEGMEWLTTMLRSKLRPQKKSFESLIQCLSQIDRLDDALLVLD 556

Query: 62  SMFRVGYKLEEGILSHLLDKLCENKYHFVESKLEEIINSN 102
           SM ++G++L   I + L+ KLCE     VE+ L +I+  N
Sbjct: 557 SMLKIGFRLSISICNSLVTKLCEKNSLPVETYLGKILERN 596

[Close]

BLAST of MELO3C006065T1 vs. TrEMBL
Match: A0A0D2STJ2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G074200 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.5e-19
Identity = 50/99 (50.51%), Postives = 68/99 (68.69%), Query Frame = 1


Query: 3   CTRDHIISGLCEKGCVVEGMEWLITMLKSNLKPQKKTFCKLIQSLIQIGKLDDSLSIIGS 62
           CTR+H+I GLC++G V EGME    ML++ LKPQKKT  KLIQSL +  +LDDSL ++  
Sbjct: 513 CTRNHLIFGLCKQGHVAEGMERFKEMLENQLKPQKKTLEKLIQSLSESDRLDDSLLVLDF 572

Query: 63  MFRVGYKLEEGILSHLLDKLCENKYHFVESKLEEIINSN 102
           MFR+GY L+  I   ++ K C+   H VES L E++ +N
Sbjct: 573 MFRLGYALKTSICHSIVTKFCQRNTHLVESCLSEVLETN 611

[Close]

BLAST of MELO3C006065T1 vs. TrEMBL
Match: V4RYR3_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10007051mg PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 7.2e-19
Identity = 51/100 (51.00%), Postives = 66/100 (66.00%), Query Frame = 1


Query: 2   VCTRDHIISGLCEKGCVVEGMEWLITMLKSNLKPQKKTFCKLIQSLIQIGKLDDSLSIIG 61
           V T D  I GLC +G  VE  EWLI ML+  LKPQ+KTF +L+Q L Q  +LDDSL ++ 
Sbjct: 441 VHTHDCFIIGLCGQGYFVEATEWLIEMLRRKLKPQRKTFERLVQCLSQDNRLDDSLLVLD 500

Query: 62  SMFRVGYKLEEGILSHLLDKLCENKYHFVESKLEEIINSN 102
            MFR+GY LE+ I   L+ KLC+   HFVE+ L +I+  N
Sbjct: 501 FMFRIGYALEKAICHSLVTKLCKENSHFVEAFLGDILEGN 540

[Close]

BLAST of MELO3C006065T1 vs. TAIR10
Match: AT3G07290.1 (AT3G07290.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 48.9 bits (115), Expect = 2.1e-06
Identity = 26/72 (36.11%), Postives = 38/72 (52.78%), Query Frame = 1


Query: 8   IISGLCEKGCVVEGMEWLITMLKSNLKPQKKTFCKLIQSLIQIGKLDDSLSIIGSMFRVG 67
           II+GLC+ G V E  + L  M  S + P   T+  +++  +  GKLD +L  + +M   G
Sbjct: 622 IINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERG 681

Query: 68  YKLEEGILSHLL 80
           Y+L + I S LL
Sbjct: 682 YELNDRIYSSLL 693

HSP 2 Score: 45.1 bits (105), Expect = 3.1e-05
Identity = 29/98 (29.59%), Postives = 46/98 (46.94%), Query Frame = 1


Query: 2   VCTRDHIISGLCEKGCVVEGMEWLITMLKSNLKPQKKTFCKLIQSLIQIGKLDDSLSIIG 61
           V T + +I+G C+ G VV   E L  M K   KP  +TF +L++ L ++GK   ++ ++ 
Sbjct: 371 VITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLK 430

Query: 62  SMFRVGYKLEEGILSHLLDKLCENKYHFVESKLEEIIN 100
            M   G   +    + L+D LC   +     KL   +N
Sbjct: 431 RMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMN 468

HSP 3 Score: 42.4 bits (98), Expect = 2.0e-04
Identity = 23/77 (29.87%), Postives = 40/77 (51.95%), Query Frame = 1


Query: 8   IISGLCEKGCVVEGMEWLITMLKSNLKPQKKTFCKLIQSLIQIGKLDDSLSIIGSMFRVG 67
           +I GLC +G +    + L +M   +++P   TF  +I +  + GK D + + +G M R G
Sbjct: 447 LIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKG 506

Query: 68  YKLEEGILSHLLDKLCE 85
             L+E   + L+D +C+
Sbjct: 507 ISLDEVTGTTLIDGVCK 523

HSP 4 Score: 33.1 bits (74), Expect = 1.2e-01
Identity = 20/74 (27.03%), Postives = 36/74 (48.65%), Query Frame = 1


Query: 6   DHIISGLCEKGCVVEGMEWLITMLKSNLKPQKKTFCKLIQSLIQIGKLDDSLSIIGSMFR 65
           D I+   C K    + ME +  +LKS   P  K+FC +IQ L + G  + +  ++  +  
Sbjct: 777 DIIMESYCSKKKHTKCMELITLVLKSGFVPSFKSFCLVIQGLKKEGDAERARELVMELLT 836

Query: 66  VGYKLEE-GILSHL 79
               +E+ G+L+++
Sbjct: 837 SNGVVEKSGVLTYV 850

[Close]

BLAST of MELO3C006065T1 vs. NCBI nr
Match: gi|659075108|ref|XP_008437970.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g18950 [Cucumis melo])

HSP 1 Score: 206.8 bits (525), Expect = 1.7e-50
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1


Query: 1   MVCTRDHIISGLCEKGCVVEGMEWLITMLKSNLKPQKKTFCKLIQSLIQIGKLDDSLSII 60
           MVCTRDHIISGLCEKGCVVEGMEWLITMLKSNLKPQKKTFCKLIQSLIQIGKLDDSLSII
Sbjct: 506 MVCTRDHIISGLCEKGCVVEGMEWLITMLKSNLKPQKKTFCKLIQSLIQIGKLDDSLSII 565

Query: 61  GSMFRVGYKLEEGILSHLLDKLCENKYHFVESKLEEIINSN 102
           GSMFRVGYKLEEGILSHLLDKLCENKYHFVESKLEEIINSN
Sbjct: 566 GSMFRVGYKLEEGILSHLLDKLCENKYHFVESKLEEIINSN 606

[Close]

BLAST of MELO3C006065T1 vs. NCBI nr
Match: gi|659075108|ref|XP_008437970.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g18950 [Cucumis melo])

HSP 1 Score: 35.0 bits (79), Expect = 9.1e+01
Identity = 16/62 (25.81%), Postives = 31/62 (50.00%), Query Frame = 1


Query: 8   IISGLCEKGCVVEGMEWLITMLKSNLKPQKKTFCKLIQSLIQIGKLDDSLSIIGSMFRVG 67
           +I GLC+   + +  +    M+    +P + ++  LI    +IG LD+++ +   M   G
Sbjct: 338 MIYGLCKMSRLEDARKLWFEMIDKGFRPNEYSYNTLIYGFCKIGNLDEAMKLYKEMLDSG 397

Query: 68  YK 70
           YK
Sbjct: 398 YK 399

HSP 2 Score: 193.4 bits (490), Expect = 2.0e-46
Identity = 96/101 (95.05%), Postives = 98/101 (97.03%), Query Frame = 1


Query: 1   MVCTRDHIISGLCEKGCVVEGMEWLITMLKSNLKPQKKTFCKLIQSLIQIGKLDDSLSII 60
           MVCTRDHIISGLCE+G VVEGMEWLITMLKSNLKPQK+TF KLIQSLIQIGKLDDSLSII
Sbjct: 506 MVCTRDHIISGLCEQGYVVEGMEWLITMLKSNLKPQKETFYKLIQSLIQIGKLDDSLSII 565

Query: 61  GSMFRVGYKLEEGILSHLLDKLCENKYHFVESKLEEIINSN 102
           GSMFRVGYKLEEG LSHLLDKLCENKYHFVESKLEEIINSN
Sbjct: 566 GSMFRVGYKLEEGALSHLLDKLCENKYHFVESKLEEIINSN 606

[Close]

BLAST of MELO3C006065T1 vs. NCBI nr
Match: gi|590660268|ref|XP_007035355.1| (Tetratricopeptide repeat-like superfamily protein, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 117.1 bits (292), Expect = 1.8e-23
Identity = 56/101 (55.45%), Postives = 72/101 (71.29%), Query Frame = 1


Query: 1   MVCTRDHIISGLCEKGCVVEGMEWLITMLKSNLKPQKKTFCKLIQSLIQIGKLDDSLSII 60
           +VCT DH+I+GLCE+G V EGME L+ MLK+ LKP+K+TF KL+Q L Q  +LDDSL ++
Sbjct: 510 IVCTHDHVIAGLCEQGYVAEGMERLVEMLKNRLKPRKETFEKLVQCLSQSDRLDDSLLVL 569

Query: 61  GSMFRVGYKLEEGILSHLLDKLCENKYHFVESKLEEIINSN 102
             MFR+GY L  GI   L+ K CE   HFVES L E++  N
Sbjct: 570 DFMFRIGYALRNGICHSLVTKFCERNAHFVESCLGEVLEIN 610

[Close]

BLAST of MELO3C006065T1 vs. NCBI nr
Match: gi|590660272|ref|XP_007035356.1| (Tetratricopeptide repeat-like superfamily protein, putative isoform 2, partial [Theobroma cacao])

HSP 1 Score: 117.1 bits (292), Expect = 1.8e-23
Identity = 56/101 (55.45%), Postives = 72/101 (71.29%), Query Frame = 1


Query: 1   MVCTRDHIISGLCEKGCVVEGMEWLITMLKSNLKPQKKTFCKLIQSLIQIGKLDDSLSII 60
           +VCT DH+I+GLCE+G V EGME L+ MLK+ LKP+K+TF KL+Q L Q  +LDDSL ++
Sbjct: 435 IVCTHDHVIAGLCEQGYVAEGMERLVEMLKNRLKPRKETFEKLVQCLSQSDRLDDSLLVL 494

Query: 61  GSMFRVGYKLEEGILSHLLDKLCENKYHFVESKLEEIINSN 102
             MFR+GY L  GI   L+ K CE   HFVES L E++  N
Sbjct: 495 DFMFRIGYALRNGICHSLVTKFCERNAHFVESCLGEVLEIN 535

[Close]

BLAST of MELO3C006065T1 vs. NCBI nr
Match: gi|731389041|ref|XP_010649846.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g18950 [Vitis vinifera])

HSP 1 Score: 106.3 bits (264), Expect = 3.2e-20
Identity = 50/100 (50.00%), Postives = 71/100 (71.00%), Query Frame = 1


Query: 2   VCTRDHIISGLCEKGCVVEGMEWLITMLKSNLKPQKKTFCKLIQSLIQIGKLDDSLSIIG 61
           VCT D +I+G C++GC +EGMEWL TML+S L+PQKK+F  LIQ L QI +LDD+L ++ 
Sbjct: 497 VCTHDFMITGFCKQGCAMEGMEWLTTMLRSKLRPQKKSFESLIQCLSQIDRLDDALLVLD 556

Query: 62  SMFRVGYKLEEGILSHLLDKLCENKYHFVESKLEEIINSN 102
           SM ++G++L   I + L+ KLCE     VE+ L +I+  N
Sbjct: 557 SMLKIGFRLSISICNSLVTKLCEKNSLPVETYLGKILERN 596

The following BLAST results are available for this feature:

BLAST of MELO3C006065T1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061EPL5_THECC	1.3e-23	55.45	Tetratricopeptide repeat-like superfamily protein, putative isoform 2 (Fragment)...	[more]
A0A061EN69_THECC	1.3e-23	55.45	Tetratricopeptide repeat-like superfamily protein, putative isoform 1 OS=Theobro...	[more]
F6HDK3_VITVI	2.2e-20	50.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g02440 PE=4 SV=...	[more]
A0A0D2STJ2_GOSRA	2.5e-19	50.51	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G074200 PE=4 SV=1	[more]
V4RYR3_9ROSI	7.2e-19	51.00	Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10007051mg PE=...	[more]

BLAST of MELO3C006065T1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G07290.1	2.1e-06	36.11	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of MELO3C006065T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659075108\|ref\|XP_008437970.1\|	1.7e-50	100.00	PREDICTED: pentatricopeptide repeat-containing protein At5g18950 [Cucumis melo]	[more]
gi\|659075108\|ref\|XP_008437970.1\|	9.1e+01	25.81	PREDICTED: pentatricopeptide repeat-containing protein At5g18950 [Cucumis melo]	[more]
gi\|590660268\|ref\|XP_007035355.1\|	1.8e-23	55.45	Tetratricopeptide repeat-like superfamily protein, putative isoform 1 [Theobroma...	[more]
gi\|590660272\|ref\|XP_007035356.1\|	1.8e-23	55.45	Tetratricopeptide repeat-like superfamily protein, putative isoform 2, partial [...	[more]
gi\|731389041\|ref\|XP_010649846.1\|	3.2e-20	50.00	PREDICTED: pentatricopeptide repeat-containing protein At5g18950 [Vitis vinifera...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051276	chromosome organization
biological_process	GO:0007059	chromosome segregation
biological_process	GO:0006259	DNA metabolic process
biological_process	GO:0007127	meiosis I
biological_process	GO:0050794	regulation of cellular process
biological_process	GO:0050896	response to stimulus
biological_process	GO:0044710	single-organism metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C006065	MELO3C006065	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C006065T1	MELO3C006065T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C006065T1.cds1	MELO3C006065T1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 39..67 score: 0.58coord: 8..32 score: 0
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 2..84 score: 7.7
None	No IPR available	PANTHER	PTHR24015:SF848	SUBFAMILY NOT NAMED	coord: 2..84 score: 7.7