MELO3C006032T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C006032T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Oxygen-evolving enhancer protein 3-1
Location	chr6 : 680271 .. 681355 (+)
Sequence length	953

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGGCCAGAAAGTGTGTGTGTGTGTGTGTGTGTGTATGTTCTCCCAAATGGCGAAATGAATGGTAAGAAGCCAAAAGTACATCCAAAGCCATGCCTACCCTTCTTGCCAACGCCAACAGTACTCTCTTCTCCTCTCCCATTTCCACTCCCCACAAATCCCTCCACCGCCGCCACTTCCCCATCATCACCGCCTCCCTTCCCATCCACCGTCGCCATATCGCCACAACCCTTGCAGTGGTGATTGGGTTGCAAGCTGCAACACCCCTCGCGCTAGCCCAAAGTTGGGGTACACACTCGTTCATTAAGGAGCGATACTTCGAGCCCGGTTTGTCGGCCGATGAGGCAGTGGCGAGGATAAAACAGACGGCGGAAGGACTTCATAGCATCCGTGAGATGCTTGAGACCACGTCATGGAGGTATGTCATCTTCTACATTCGTTTGAAGTCGGCCTACCTCTCCCAAGACTTGAAAACTGCCATGACTACTTTGCCACAAGCTCGCCAAAACGATTTCGTTAAAACCGCTAACGAGTTGGTCGATAACATGGCTGAGGTATGTACTTTTCTATTGTTTTATTTTCATAATCCAAAAATATTTTACTAATTAAATTTAGTCCAAAGTCTAATTATTGATTAACTTTTTTTTGTTGAACTTTAATTTGATTTGGATTATGATATGTTTCAGTTGGATTATTACGTTCGCACACCCAAGGTGTATGAGTCATATTTGTACTACGAAAAGACATTGAAATCCATTGATGATCTGGTGGCTTTACTTGCTTAGAGATGTAAATAAAATAATTAATATCAAATGTTCTTCATCCCACAAAATTGAATGCATCAAATTTGTAGATTTGTGTTATTGATTTAAGATTTCTGTAGTCTTTTACTTCATTAGTTAATTATATTAATTCATGTGTAAAAAATTATTTTATTCTAGTAATTGTTATGAAAGAAAAAGGGTTATTAATTTCTTTCATTTTAAAAAATAAATACAGAATTTTGAGATCGAATTTTGTAGATTACTCTTAGCTATATTTTTAGTTTGTAACTTTGTCAATAAATATGTAGTGTACAAAGTTGGAT

mRNA sequence

AAGGCCAGAAAGTGTGTGTGTGTGTGTGTGTGTGTATGTTCTCCCAAATGGCGAAATGAATGGTAAGAAGCCAAAAGTACATCCAAAGCCATGCCTACCCTTCTTGCCAACGCCAACAGTACTCTCTTCTCCTCTCCCATTTCCACTCCCCACAAATCCCTCCACCGCCGCCACTTCCCCATCATCACCGCCTCCCTTCCCATCCACCGTCGCCATATCGCCACAACCCTTGCAGTGGTGATTGGGTTGCAAGCTGCAACACCCCTCGCGCTAGCCCAAAGTTGGGGTACACACTCGTTCATTAAGGAGCGATACTTCGAGCCCGGTTTGTCGGCCGATGAGGCAGTGGCGAGGATAAAACAGACGGCGGAAGGACTTCATAGCATCCGTGAGATGCTTGAGACCACGTCATGGAGGTATGTCATCTTCTACATTCGTTTGAAGTCGGCCTACCTCTCCCAAGACTTGAAAACTGCCATGACTACTTTGCCACAAGCTCGCCAAAACGATTTCGTTAAAACCGCTAACGAGTTGGTCGATAACATGGCTGAGTTGGATTATTACGTTCGCACACCCAAGGTGTATGAGTCATATTTGTACTACGAAAAGACATTGAAATCCATTGATGATCTGGTGGCTTTACTTGCTTAGAGATGTAAATAAAATAATTAATATCAAATGTTCTTCATCCCACAAAATTGAATGCATCAAATTTGTAGATTTGTGTTATTGATTTAAGATTTCTGTAGTCTTTTACTTCATTAGTTAATTATATTAATTCATGTGTAAAAAATTATTTTATTCTAGTAATTGTTATGAAAGAAAAAGGGTTATTAATTTCTTTCATTTTAAAAAATAAATACAGAATTTTGAGATCGAATTTTGTAGATTACTCTTAGCTATATTTTTAGTTTGTAACTTTGTCAATAAATATGTAGTGTACAAAGTTGGAT

Coding sequence (CDS)

ATGCCTACCCTTCTTGCCAACGCCAACAGTACTCTCTTCTCCTCTCCCATTTCCACTCCCCACAAATCCCTCCACCGCCGCCACTTCCCCATCATCACCGCCTCCCTTCCCATCCACCGTCGCCATATCGCCACAACCCTTGCAGTGGTGATTGGGTTGCAAGCTGCAACACCCCTCGCGCTAGCCCAAAGTTGGGGTACACACTCGTTCATTAAGGAGCGATACTTCGAGCCCGGTTTGTCGGCCGATGAGGCAGTGGCGAGGATAAAACAGACGGCGGAAGGACTTCATAGCATCCGTGAGATGCTTGAGACCACGTCATGGAGGTATGTCATCTTCTACATTCGTTTGAAGTCGGCCTACCTCTCCCAAGACTTGAAAACTGCCATGACTACTTTGCCACAAGCTCGCCAAAACGATTTCGTTAAAACCGCTAACGAGTTGGTCGATAACATGGCTGAGTTGGATTATTACGTTCGCACACCCAAGGTGTATGAGTCATATTTGTACTACGAAAAGACATTGAAATCCATTGATGATCTGGTGGCTTTACTTGCTTAG

Protein sequence

MPTLLANANSTLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLALAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALLA*

Homology

[Close]

BLAST of MELO3C006032T1 vs. Swiss-Prot
Match: PNSL2_ARATH (Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis thaliana GN=PNSL2 PE=1 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 2.5e-50
Identity = 101/148 (68.24%), Postives = 116/148 (78.38%), Query Frame = 1


Query: 40  RRHIATTLAVVIGLQAATPLALAQS-WGTHSFIKERYFEPGLSADEAVARIKQTAEGLHS 99
           RR   T+L     +  AT  ALAQ  WGT SFIKE+YF PGLS ++A ARIKQTAEGL  
Sbjct: 43  RRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRD 102

Query: 100 IREMLETTSWRYVIFYIRLKSAYLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYY 159
           +REML+  SWRYVIFYIRLK AYLSQDL  AM  LP++R+ND+V+ ANELV+NM+ELD+Y
Sbjct: 103 MREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSELDFY 162

Query: 160 VRTPKVYESYLYYEKTLKSIDDLVALLA 187
           VRTPKVYESYLYYEKTLKSID++V  LA
Sbjct: 163 VRTPKVYESYLYYEKTLKSIDNVVEFLA 190

[Close]

BLAST of MELO3C006032T1 vs. Swiss-Prot
Match: PSBQ2_MAIZE (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.2e-10
Identity = 32/115 (27.83%), Postives = 64/115 (55.65%), Query Frame = 1


Query: 71  IKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 130
           +KER++   L   EAVAR+K +A+ + +++ +++  +W YV   +RL+++YL  DLKT +
Sbjct: 98  LKERFYLQPLPPAEAVARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVI 157

Query: 131 TTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 186
            + P+  +    +   +L   + +LD+  +     E+  Y+  T  ++ D++A L
Sbjct: 158 ASKPKEEKKSLKELTGKLFSTIDDLDHAAKMKSTPEAEKYFAATKDALGDVLAKL 212

[Close]

BLAST of MELO3C006032T1 vs. Swiss-Prot
Match: PSBQ2_ARATH (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=PSBQ2 PE=1 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 4.2e-10
Identity = 32/115 (27.83%), Postives = 64/115 (55.65%), Query Frame = 1


Query: 71  IKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 130
           +K+R++   LS  EA AR K +A+ + +++  ++  +W YV   +RL+++YL  DL T +
Sbjct: 115 LKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVI 174

Query: 131 TTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 186
           +  P+  +        +L   +  LDY  R+    ++  YY +T+ S+++++A L
Sbjct: 175 SAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKL 229

[Close]

BLAST of MELO3C006032T1 vs. Swiss-Prot
Match: PSBQ1_MAIZE (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 9.4e-10
Identity = 31/115 (26.96%), Postives = 63/115 (54.78%), Query Frame = 1


Query: 71  IKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 130
           +KER++   L   EA AR+K +A+ + +++ +++  +W YV   +RL+++YL  DLKT +
Sbjct: 102 LKERFYLQPLPPAEAAARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVI 161

Query: 131 TTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 186
            + P+  +    +   +L   + +LD+  +     E+  Y+  T  ++ D++A L
Sbjct: 162 ASKPKEEKKSLKELTGKLFSTIDDLDHAAKIKSTPEAEKYFAATKDALGDVLAKL 216

[Close]

BLAST of MELO3C006032T1 vs. Swiss-Prot
Match: PSBQ1_ARATH (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-09
Identity = 30/115 (26.09%), Postives = 64/115 (55.65%), Query Frame = 1


Query: 71  IKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 130
           +K+R++   L   EA AR K++A+ + +++ +++  +W YV   +R K++YL  DL T +
Sbjct: 109 LKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTII 168

Query: 131 TTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 186
           ++ P+  +        +L D +  LDY  +     ++  YY +T+ ++++++A L
Sbjct: 169 SSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of MELO3C006032T1 vs. TrEMBL
Match: A0A0A0L3W3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119660 PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 6.4e-90
Identity = 176/188 (93.62%), Postives = 182/188 (96.81%), Query Frame = 1


Query: 1   MPTLLANAN-STLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPL 60
           MPTL ANAN +TLFSS ISTPHKS HR HFP+ITASLPIHRRHIATTLA+V+GLQAATPL
Sbjct: 1   MPTL-ANANPNTLFSSRISTPHKSRHRPHFPVITASLPIHRRHIATTLALVVGLQAATPL 60

Query: 61  -ALAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLK 120
            ALAQSWGTHSFIKERYFEPGLSA+EAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLK
Sbjct: 61  VALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLK 120

Query: 121 SAYLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSI 180
           SAYLSQDLKTAMTTLPQAR+NDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSI
Sbjct: 121 SAYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSI 180

Query: 181 DDLVALLA 187
           DDLVALLA
Sbjct: 181 DDLVALLA 187

[Close]

BLAST of MELO3C006032T1 vs. TrEMBL
Match: D7TN65_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02680 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.9e-57
Identity = 125/185 (67.57%), Postives = 139/185 (75.14%), Query Frame = 1


Query: 13  FSSPISTPHKSL----HRRH--FPIITASL-----PIHRRHIATTLAVVIGLQAATPLAL 72
           F+SP S     L    H R    P   ASL     PI RR I +TL         TPLAL
Sbjct: 4   FTSPTSLSCAQLTTAQHGRSPSLPATRASLSGEETPILRRRIVSTLLATSLALHGTPLAL 63

Query: 73  AQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAY 132
           A++WGT SF+KER+FEPGLS ++AVARI+QTAEGLHSIR MLET SWRYVIFYIRLKSAY
Sbjct: 64  AENWGTRSFLKERFFEPGLSPEDAVARIRQTAEGLHSIRHMLETMSWRYVIFYIRLKSAY 123

Query: 133 LSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDL 187
           LSQDLK AMTTLP++R+  +   ANELVDNMAE DYYVRTPKVYESYLYYEKTLKSIDDL
Sbjct: 124 LSQDLKNAMTTLPESRRRSYANKANELVDNMAEFDYYVRTPKVYESYLYYEKTLKSIDDL 183

[Close]

BLAST of MELO3C006032T1 vs. TrEMBL
Match: A0A0F7GYP0_9ROSI (Photosynthetic NDH subcomplex L 2 OS=Melianthus villosus GN=2 PE=2 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.9e-57
Identity = 123/185 (66.49%), Postives = 144/185 (77.84%), Query Frame = 1


Query: 10  STLFSSPISTPHKSLHRRHFPIITASLPIH-----RRHIATTLAVV----IGLQAATPLA 69
           STL     STP K       PII +SLP+      RR I +TL       IGL A TPLA
Sbjct: 8   STLLRLQTSTPRKP----SLPIIRSSLPVEENAIIRRRILSTLFTTSMGTIGLNA-TPLA 67

Query: 70  LAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSA 129
           LA++WG+ SF+ ERYFEPGLS ++AVARI+QTAEGLHS+REML+T SWRYV+FYIRLKSA
Sbjct: 68  LAENWGSRSFLLERYFEPGLSPEDAVARIRQTAEGLHSMREMLDTMSWRYVMFYIRLKSA 127

Query: 130 YLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDD 186
           YL+QDLK AM+TLPQ R+  +VKTANEL+DNMAE DYYVRTPKVYESYLYYEKTLKS+D+
Sbjct: 128 YLNQDLKNAMSTLPQTRRPAYVKTANELIDNMAEFDYYVRTPKVYESYLYYEKTLKSLDE 187

[Close]

BLAST of MELO3C006032T1 vs. TrEMBL
Match: M5Y597_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011707mg PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.2e-56
Identity = 121/195 (62.05%), Postives = 143/195 (73.33%), Query Frame = 1


Query: 7   NANSTLFSSPISTPHKSLHRRHFPIITASLP---------IHRRHIATTL---AVVIGLQ 66
           N  +T   + I+ P   L +   P I ASLP           RR I T+    ++ +G+ 
Sbjct: 6   NTTTTFLHAQITKPQNYLCKISLPAIKASLPGAEEEENNATSRRKIVTSFLGTSLALGVH 65

Query: 67  A---ATPLALAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYV 126
               ATPL LA++WGT SFI+ER+FEPGLS ++AVARIKQTAEGLHSIR+MLE  +WRYV
Sbjct: 66  QHGIATPLGLAENWGTRSFIRERFFEPGLSPEDAVARIKQTAEGLHSIRDMLEAMAWRYV 125

Query: 127 IFYIRLKSAYLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYY 186
           IFYIRLKSAYLSQDLK A T +P  R+ ++VKTANELV+NM E DYYVRTPKVYESYLYY
Sbjct: 126 IFYIRLKSAYLSQDLKNAATLVPDVRRQEYVKTANELVNNMTEFDYYVRTPKVYESYLYY 185

[Close]

BLAST of MELO3C006032T1 vs. TrEMBL
Match: A0A0D2SAU6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G087300 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 4.6e-56
Identity = 122/193 (63.21%), Postives = 143/193 (74.09%), Query Frame = 1


Query: 9   NSTLF---SSPISTPHKS-LHRRHFPIITASLP--------IHRRHIATTLAVV----IG 68
           NST F   +    TP      R   PII AS           +RR + TT        +G
Sbjct: 6   NSTFFIHVNQKFPTPQSHHCSRLSLPIIRASFQPQQNNVIISNRRKLVTTFLATSLAALG 65

Query: 69  LQAATPLALAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVI 128
           L   TP+A+A++WGTHSF++ER+FEPGLS ++A ARIKQTAEGLHS+R+ML+T SWRYV+
Sbjct: 66  LNG-TPVAVAENWGTHSFLRERFFEPGLSPEDAAARIKQTAEGLHSMRDMLDTMSWRYVM 125

Query: 129 FYIRLKSAYLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYE 186
           FYIRLK AYLSQDLK AM+TLPQ R++ +VKTANELVDNMAE DYYVRTPKVYESYLYYE
Sbjct: 126 FYIRLKQAYLSQDLKNAMSTLPQGRKDKYVKTANELVDNMAEFDYYVRTPKVYESYLYYE 185

[Close]

BLAST of MELO3C006032T1 vs. TAIR10
Match: AT1G14150.1 (AT1G14150.1 PsbQ-like 2)

HSP 1 Score: 199.9 bits (507), Expect = 1.4e-51
Identity = 101/148 (68.24%), Postives = 116/148 (78.38%), Query Frame = 1


Query: 40  RRHIATTLAVVIGLQAATPLALAQS-WGTHSFIKERYFEPGLSADEAVARIKQTAEGLHS 99
           RR   T+L     +  AT  ALAQ  WGT SFIKE+YF PGLS ++A ARIKQTAEGL  
Sbjct: 43  RRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRD 102

Query: 100 IREMLETTSWRYVIFYIRLKSAYLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYY 159
           +REML+  SWRYVIFYIRLK AYLSQDL  AM  LP++R+ND+V+ ANELV+NM+ELD+Y
Sbjct: 103 MREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSELDFY 162

Query: 160 VRTPKVYESYLYYEKTLKSIDDLVALLA 187
           VRTPKVYESYLYYEKTLKSID++V  LA
Sbjct: 163 VRTPKVYESYLYYEKTLKSIDNVVEFLA 190

[Close]

BLAST of MELO3C006032T1 vs. TAIR10
Match: AT4G05180.1 (AT4G05180.1 photosystem II subunit Q-2)

HSP 1 Score: 66.2 bits (160), Expect = 2.4e-11
Identity = 32/115 (27.83%), Postives = 64/115 (55.65%), Query Frame = 1


Query: 71  IKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 130
           +K+R++   LS  EA AR K +A+ + +++  ++  +W YV   +RL+++YL  DL T +
Sbjct: 115 LKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVI 174

Query: 131 TTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 186
           +  P+  +        +L   +  LDY  R+    ++  YY +T+ S+++++A L
Sbjct: 175 SAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKL 229

[Close]

BLAST of MELO3C006032T1 vs. TAIR10
Match: AT4G21280.2 (AT4G21280.2 photosystem II subunit QA)

HSP 1 Score: 64.7 bits (156), Expect = 6.9e-11
Identity = 30/115 (26.09%), Postives = 64/115 (55.65%), Query Frame = 1


Query: 71  IKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 130
           +K+R++   L   EA AR K++A+ + +++ +++  +W YV   +R K++YL  DL T +
Sbjct: 109 LKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTII 168

Query: 131 TTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 186
           ++ P+  +        +L D +  LDY  +     ++  YY +T+ ++++++A L
Sbjct: 169 SSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of MELO3C006032T1 vs. TAIR10
Match: AT3G01440.1 (AT3G01440.1 PsbQ-like 1)

HSP 1 Score: 50.8 bits (120), Expect = 1.0e-06
Identity = 29/121 (23.97%), Postives = 57/121 (47.11%), Query Frame = 1


Query: 66  GTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQD 125
           GT +FIK+  +   +     + R+K+ A  L ++ +++   +  YV  Y+RLKS +L  D
Sbjct: 100 GTRTFIKKGVYVADIGTKGRMYRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYD 159

Query: 126 LKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 185
               ++      +      AN L DN  +L+   +T  + E+   Y+ T   + +++  +
Sbjct: 160 FDNLISAAASEDKQPLTDLANRLFDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRM 219

Query: 186 A 187
           A
Sbjct: 220 A 220

[Close]

BLAST of MELO3C006032T1 vs. NCBI nr
Match: gi|659075001|ref|XP_008437911.1| (PREDICTED: psbQ-like protein 1, chloroplastic [Cucumis melo])

HSP 1 Score: 368.2 bits (944), Expect = 8.3e-99
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 1


Query: 1   MPTLLANANSTLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLA 60
           MPTLLANANSTLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLA
Sbjct: 1   MPTLLANANSTLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLA 60

Query: 61  LAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSA 120
           LAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSA
Sbjct: 61  LAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSA 120

Query: 121 YLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDD 180
           YLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDD
Sbjct: 121 YLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDD 180

Query: 181 LVALLA 187
           LVALLA
Sbjct: 181 LVALLA 186

[Close]

BLAST of MELO3C006032T1 vs. NCBI nr
Match: gi|449432058|ref|XP_004133817.1| (PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucumis sativus])

HSP 1 Score: 338.2 bits (866), Expect = 9.2e-90
Identity = 176/188 (93.62%), Postives = 182/188 (96.81%), Query Frame = 1


Query: 1   MPTLLANAN-STLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPL 60
           MPTL ANAN +TLFSS ISTPHKS HR HFP+ITASLPIHRRHIATTLA+V+GLQAATPL
Sbjct: 1   MPTL-ANANPNTLFSSRISTPHKSRHRPHFPVITASLPIHRRHIATTLALVVGLQAATPL 60

Query: 61  -ALAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLK 120
            ALAQSWGTHSFIKERYFEPGLSA+EAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLK
Sbjct: 61  VALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLK 120

Query: 121 SAYLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSI 180
           SAYLSQDLKTAMTTLPQAR+NDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSI
Sbjct: 121 SAYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSI 180

Query: 181 DDLVALLA 187
           DDLVALLA
Sbjct: 181 DDLVALLA 187

[Close]

BLAST of MELO3C006032T1 vs. NCBI nr
Match: gi|1009154202|ref|XP_015895040.1| (PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 231.9 bits (590), Expect = 9.3e-58
Identity = 129/193 (66.84%), Postives = 143/193 (74.09%), Query Frame = 1


Query: 11  TLFSSPIST---PHKSLHRRHFPIITASLP------IHRRHIATTLAV----VIGLQ--- 70
           T F + I+T   P      R FP I AS          RR I TT       + GLQ   
Sbjct: 2   TNFLTQITTLLCPQHCCRARAFPSIRASFQNEENTTCSRRKIVTTFVASSVALTGLQYQV 61

Query: 71  -AATPLALAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIF 130
              TP ALAQ+WGT SFI+ER+FEPGLS ++AVARIKQTAEGLHSIR+MLE+ SWRYVIF
Sbjct: 62  IMKTPDALAQNWGTRSFIRERFFEPGLSPEDAVARIKQTAEGLHSIRDMLESMSWRYVIF 121

Query: 131 YIRLKSAYLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEK 187
           YIRLKSAYLSQDLK AMTTLP+AR+ D+ K ANELVDNMAE DYYVRTPKVYESY+YYEK
Sbjct: 122 YIRLKSAYLSQDLKNAMTTLPEARRQDYAKVANELVDNMAEFDYYVRTPKVYESYVYYEK 181

[Close]

BLAST of MELO3C006032T1 vs. NCBI nr
Match: gi|720007404|ref|XP_010258294.1| (PREDICTED: psbQ-like protein 1, chloroplastic [Nelumbo nucifera])

HSP 1 Score: 231.5 bits (589), Expect = 1.2e-57
Identity = 119/185 (64.32%), Postives = 145/185 (78.38%), Query Frame = 1


Query: 10  STLFSSPISTPHKSLHRRHFPIITASL-----PIHRRHIATTL---AVVIGLQAATPLAL 69
           + L+   +    K    R F  I AS      P+HRR + +T    ++ +GLQA TP+AL
Sbjct: 8   TALYHRHMPQTFKGRQSRSFSTIRASSIGEENPVHRRKVVSTFLTASLALGLQA-TPIAL 67

Query: 70  AQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAY 129
           A++WGT SFIKER+FEPGLS+++AVARI+QTAEGLHSIR MLET SWRYV+FYIRLK+AY
Sbjct: 68  AENWGTRSFIKERFFEPGLSSEDAVARIRQTAEGLHSIRGMLETMSWRYVLFYIRLKTAY 127

Query: 130 LSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDL 187
           LSQDLK  +T +P+ R + +VKTANELVDNMAE DYYVRTPKVYESYLYYEKTLKS+DDL
Sbjct: 128 LSQDLKNVLTIMPENRLDSYVKTANELVDNMAEFDYYVRTPKVYESYLYYEKTLKSMDDL 187

[Close]

BLAST of MELO3C006032T1 vs. NCBI nr
Match: gi|225425642|ref|XP_002272064.1| (PREDICTED: psbQ-like protein 1, chloroplastic [Vitis vinifera])

HSP 1 Score: 230.3 bits (586), Expect = 2.7e-57
Identity = 125/185 (67.57%), Postives = 139/185 (75.14%), Query Frame = 1


Query: 13  FSSPISTPHKSL----HRRH--FPIITASL-----PIHRRHIATTLAVVIGLQAATPLAL 72
           F+SP S     L    H R    P   ASL     PI RR I +TL         TPLAL
Sbjct: 4   FTSPTSLSCAQLTTAQHGRSPSLPATRASLSGEETPILRRRIVSTLLATSLALHGTPLAL 63

Query: 73  AQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAY 132
           A++WGT SF+KER+FEPGLS ++AVARI+QTAEGLHSIR MLET SWRYVIFYIRLKSAY
Sbjct: 64  AENWGTRSFLKERFFEPGLSPEDAVARIRQTAEGLHSIRHMLETMSWRYVIFYIRLKSAY 123

Query: 133 LSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDL 187
           LSQDLK AMTTLP++R+  +   ANELVDNMAE DYYVRTPKVYESYLYYEKTLKSIDDL
Sbjct: 124 LSQDLKNAMTTLPESRRRSYANKANELVDNMAEFDYYVRTPKVYESYLYYEKTLKSIDDL 183

The following BLAST results are available for this feature:

BLAST of MELO3C006032T1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PNSL2_ARATH	2.5e-50	68.24	Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis t...	[more]
PSBQ2_MAIZE	3.2e-10	27.83	Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV...	[more]
PSBQ2_ARATH	4.2e-10	27.83	Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=P...	[more]
PSBQ1_MAIZE	9.4e-10	26.96	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV...	[more]
PSBQ1_ARATH	1.2e-09	26.09	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=P...	[more]

BLAST of MELO3C006032T1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3W3_CUCSA	6.4e-90	93.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119660 PE=4 SV=1	[more]
D7TN65_VITVI	1.9e-57	67.57	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02680 PE=4 SV=...	[more]
A0A0F7GYP0_9ROSI	1.9e-57	66.49	Photosynthetic NDH subcomplex L 2 OS=Melianthus villosus GN=2 PE=2 SV=1	[more]
M5Y597_PRUPE	1.2e-56	62.05	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011707mg PE=4 SV=1	[more]
A0A0D2SAU6_GOSRA	4.6e-56	63.21	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G087300 PE=4 SV=1	[more]

BLAST of MELO3C006032T1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G14150.1	1.4e-51	68.24	PsbQ-like 2	[more]
AT4G05180.1	2.4e-11	27.83	photosystem II subunit Q-2	[more]
AT4G21280.2	6.9e-11	26.09	photosystem II subunit QA	[more]
AT3G01440.1	1.0e-06	23.97	PsbQ-like 1	[more]

BLAST of MELO3C006032T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659075001\|ref\|XP_008437911.1\|	8.3e-99	100.00	PREDICTED: psbQ-like protein 1, chloroplastic [Cucumis melo]	[more]
gi\|449432058\|ref\|XP_004133817.1\|	9.2e-90	93.62	PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucu...	[more]
gi\|1009154202\|ref\|XP_015895040.1\|	9.3e-58	66.84	PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Zizi...	[more]
gi\|720007404\|ref\|XP_010258294.1\|	1.2e-57	64.32	PREDICTED: psbQ-like protein 1, chloroplastic [Nelumbo nucifera]	[more]
gi\|225425642\|ref\|XP_002272064.1\|	2.7e-57	67.57	PREDICTED: psbQ-like protein 1, chloroplastic [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR008797	PSII_PsbQ
IPR023222	PsbQ-like_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0009523	photosystem II
GO:0009654	photosystem II oxygen evolving complex
GO:0019898	extrinsic component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009543	chloroplast thylakoid lumen
cellular_component	GO:0009344	nitrite reductase complex [NAD(P)H]
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C006032	MELO3C006032	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C006032T1	MELO3C006032T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C006032T1.cds1	MELO3C006032T1.cds1	CDS
MELO3C006032T1.cds2	MELO3C006032T1.cds2	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008797	Oxygen-evolving enhancer protein 3	PFAM	PF05757	PsbQ	coord: 62..186 score: 4.1
IPR023222	PsbQ-like domain	GENE3D	G3DSA:1.20.120.290		coord: 51..186 score: 9.4
IPR023222	PsbQ-like domain	unknown	SSF101112	Oxygen-evolving enhancer protein 3,	coord: 75..186 score: 6.15
None	No IPR available	PANTHER	PTHR33399	FAMILY NOT NAMED	coord: 31..186 score: 6.1
None	No IPR available	PANTHER	PTHR33399:SF5	PSBQ-LIKE PROTEIN 1, CHLOROPLASTIC	coord: 31..186 score: 6.1