MELO3C004802T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C004802T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	RNA recognition motif
Location	chr12 : 9914587 .. 9915018 (+)
Sequence length	432

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACTTCTTTCTCTTTCTCTCCATTTCATGCAGACAAAGCCATTGTCACTTTCAAAGATCCAACACAAGCAACCCTTCTATGCAACAACAATGAATGGTCCACAATAGGAAGTTTTTATGTCAGATTTGAAAAATGGTCATTCAAAAAACACGCGGCCCCAATACTGGTTCCTAGCTACGGTGGATGGGTAAGCTTTAGAGGCATTCCTCTTTCAGCTTGGAAGACTGATACTTTCATCCAAATTGGGAATGCTTGTAGGGGCTTTCTGGATGTGGCTAAGGAAACAAAGACTAGAAAAAATCTTGTGGAAGCCAGAATCAAAATCAGATACAATTATTCTAGCTTCATACCAACAAATATAAGCATCAAAGACGACAACGGACACCTCTTCTTTGTTCAAGCAGTTACTCATGAAAATGGAAAGTGA

mRNA sequence

ATGGAAACTTCTTTCTCTTTCTCTCCATTTCATGCAGACAAAGCCATTGTCACTTTCAAAGATCCAACACAAGCAACCCTTCTATGCAACAACAATGAATGGTCCACAATAGGAAGTTTTTATGTCAGATTTGAAAAATGGTCATTCAAAAAACACGCGGCCCCAATACTGGTTCCTAGCTACGGTGGATGGGTAAGCTTTAGAGGCATTCCTCTTTCAGCTTGGAAGACTGATACTTTCATCCAAATTGGGAATGCTTGTAGGGGCTTTCTGGATGTGGCTAAGGAAACAAAGACTAGAAAAAATCTTGTGGAAGCCAGAATCAAAATCAGATACAATTATTCTAGCTTCATACCAACAAATATAAGCATCAAAGACGACAACGGACACCTCTTCTTTGTTCAAGCAGTTACTCATGAAAATGGAAAGTGA

Coding sequence (CDS)

ATGGAAACTTCTTTCTCTTTCTCTCCATTTCATGCAGACAAAGCCATTGTCACTTTCAAAGATCCAACACAAGCAACCCTTCTATGCAACAACAATGAATGGTCCACAATAGGAAGTTTTTATGTCAGATTTGAAAAATGGTCATTCAAAAAACACGCGGCCCCAATACTGGTTCCTAGCTACGGTGGATGGGTAAGCTTTAGAGGCATTCCTCTTTCAGCTTGGAAGACTGATACTTTCATCCAAATTGGGAATGCTTGTAGGGGCTTTCTGGATGTGGCTAAGGAAACAAAGACTAGAAAAAATCTTGTGGAAGCCAGAATCAAAATCAGATACAATTATTCTAGCTTCATACCAACAAATATAAGCATCAAAGACGACAACGGACACCTCTTCTTTGTTCAAGCAGTTACTCATGAAAATGGAAAGTGA

Protein sequence

METSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPSYGGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPTNISIKDDNGHLFFVQAVTHENGK*

Homology

[Close]

BLAST of MELO3C004802T1 vs. TrEMBL
Match: E5GB30_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 4.4e-38
Identity = 69/143 (48.25%), Postives = 101/143 (70.63%), Query Frame = 1


Query: 1   METSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPS 60
           ++T+ S+ PFHA+KA++ FKD  QA L+C N  W+T+G FYV+FE+W+ K HA+P  VPS
Sbjct: 154 LDTTVSYKPFHANKALICFKDFEQANLICKNKGWTTVGRFYVKFEEWNQKDHASPKFVPS 213

Query: 61  YGGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPT 120
           YGGW+  R +PL AW  ++F+QIG+AC GF++VAKET+   +L+EA I+++ NYS FIP 
Sbjct: 214 YGGWIKVRAVPLHAWNLESFVQIGDACGGFMEVAKETRELTDLIEASIRVKDNYSGFIPA 273

Query: 121 NISIKDDNGHLFFVQAVTHENGK 144
            I + D     + +Q +    GK
Sbjct: 274 FIKLIDKEERSYIIQVIVKTEGK 296

[Close]

BLAST of MELO3C004802T1 vs. TrEMBL
Match: A0A0A0KFP0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G367105 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 5.0e-34
Identity = 62/140 (44.29%), Postives = 98/140 (70.00%), Query Frame = 1


Query: 4   SFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPSYGG 63
           SF++  FHA+KA+V+F++  QAT++C N  W+ +  FY++FE+W+  KH +P LVPSYGG
Sbjct: 11  SFTYKSFHAEKALVSFENKYQATIMCKNRGWNPVDKFYIKFEEWNTMKHGSPKLVPSYGG 70

Query: 64  WVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPTNIS 123
           WV+FRGI + AW  +TF QIG AC  F+++ +E K +  + +A +K++ N++ FIP  I+
Sbjct: 71  WVNFRGILMHAWDMETFTQIGEACGSFIEITREIKKQVEIRQAMLKVKENFTGFIPAFIN 130

Query: 124 IKDDNGHLFFVQAVTHENGK 144
           + D  G+ F VQ++    GK
Sbjct: 131 VFDKKGNSFLVQSIVQAEGK 150

[Close]

BLAST of MELO3C004802T1 vs. TrEMBL
Match: A0A0A0KNC5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G465580 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 7.5e-22
Identity = 51/123 (41.46%), Postives = 76/123 (61.79%), Query Frame = 1


Query: 4   SFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPSYGG 63
           + ++  FHA+KA+V  ++     LLC N  W+TIG FYV+FE W+  KHA P ++ SY G
Sbjct: 200 NITYKLFHAEKAMVFLEEKNMVNLLCKNRGWTTIGKFYVKFEAWNISKHATPKVLSSYVG 259

Query: 64  WVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPTNIS 123
           WV F+GIPL AW   +F QIG  C GF++VA+ T+  + +++     +Y   S +  N S
Sbjct: 260 WVKFKGIPLHAWNYSSFYQIGEVCGGFVEVARITRDTEWVMKKATISQYRPLSKLKENGS 319

Query: 124 IKD 127
            K+
Sbjct: 320 RKE 322

[Close]

BLAST of MELO3C004802T1 vs. TrEMBL
Match: A0A0A0K120_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G004025 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.6e-10
Identity = 28/63 (44.44%), Postives = 42/63 (66.67%), Query Frame = 1


Query: 1   METSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPS 60
           ++ + ++ PFHA+K  VT +D     LLC N  W+T+G +YV+FE  +  KHA+P  +PS
Sbjct: 104 LDLNITYKPFHAEKVAVTIEDKNLVNLLCKNRGWTTVGKYYVKFEASNIAKHASPKCLPS 163

Query: 61  YGG 64
           YGG
Sbjct: 164 YGG 166

[Close]

BLAST of MELO3C004802T1 vs. TrEMBL
Match: A5BME0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011400 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-06
Identity = 31/92 (33.70%), Postives = 47/92 (51.09%), Query Frame = 1


Query: 37  IGSFYVRFEKWSFKKHAAPILVPSYGGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKE 96
           +G F +R EKWS +             WV   G+P+S W  D   +IG  C GF+D+  +
Sbjct: 169 VGGFVMRLEKWSRRTGCLTEEEKEREAWVRIVGLPISLWNRDILSKIGEGCGGFVDIDVK 228

Query: 97  TKTRKNLVEARIKIRYNYSSFIPTNISIKDDN 129
           T+ ++ L  ARI++R N    IP  + I  +N
Sbjct: 229 TERKEELQWARIRVRINEGK-IPKMVEIWVEN 259

[Close]

BLAST of MELO3C004802T1 vs. NCBI nr
Match: gi|659071590|ref|XP_008460776.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis melo])

HSP 1 Score: 177.2 bits (448), Expect = 2.1e-41
Identity = 80/142 (56.34%), Postives = 100/142 (70.42%), Query Frame = 1


Query: 2   ETSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPSY 61
           E SF+++ FHADKA+V F     A LLC N  W+T+G + VRFEKW   +HA P L+PSY
Sbjct: 228 EESFTYNAFHADKALVHFSSSIPANLLCQNKGWTTVGKYSVRFEKWCPIQHATPKLIPSY 287

Query: 62  GGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPTN 121
           GGW  FRGIPL  W   TF QIG AC G + VA+ET++ KNL+EA+IKIRYNYS F+P N
Sbjct: 288 GGWTIFRGIPLHLWNMKTFQQIGKACGGLIKVAEETRSAKNLIEAKIKIRYNYSGFLPAN 347

Query: 122 ISIKDDNGHLFFVQAVTHENGK 144
           + I D+ G+ F +Q VTH  GK
Sbjct: 348 VRIFDNEGNKFSIQVVTHPEGK 369

[Close]

BLAST of MELO3C004802T1 vs. NCBI nr
Match: gi|307135793|gb|ADN33672.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 165.6 bits (418), Expect = 6.3e-38
Identity = 69/143 (48.25%), Postives = 101/143 (70.63%), Query Frame = 1


Query: 1   METSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPS 60
           ++T+ S+ PFHA+KA++ FKD  QA L+C N  W+T+G FYV+FE+W+ K HA+P  VPS
Sbjct: 154 LDTTVSYKPFHANKALICFKDFEQANLICKNKGWTTVGRFYVKFEEWNQKDHASPKFVPS 213

Query: 61  YGGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPT 120
           YGGW+  R +PL AW  ++F+QIG+AC GF++VAKET+   +L+EA I+++ NYS FIP 
Sbjct: 214 YGGWIKVRAVPLHAWNLESFVQIGDACGGFMEVAKETRELTDLIEASIRVKDNYSGFIPA 273

Query: 121 NISIKDDNGHLFFVQAVTHENGK 144
            I + D     + +Q +    GK
Sbjct: 274 FIKLIDKEERSYIIQVIVKTEGK 296

[Close]

BLAST of MELO3C004802T1 vs. NCBI nr
Match: gi|700192460|gb|KGN47664.1| (hypothetical protein Csa_6G367105 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 7.2e-34
Identity = 62/140 (44.29%), Postives = 98/140 (70.00%), Query Frame = 1


Query: 4   SFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPSYGG 63
           SF++  FHA+KA+V+F++  QAT++C N  W+ +  FY++FE+W+  KH +P LVPSYGG
Sbjct: 11  SFTYKSFHAEKALVSFENKYQATIMCKNRGWNPVDKFYIKFEEWNTMKHGSPKLVPSYGG 70

Query: 64  WVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPTNIS 123
           WV+FRGI + AW  +TF QIG AC  F+++ +E K +  + +A +K++ N++ FIP  I+
Sbjct: 71  WVNFRGILMHAWDMETFTQIGEACGSFIEITREIKKQVEIRQAMLKVKENFTGFIPAFIN 130

Query: 124 IKDDNGHLFFVQAVTHENGK 144
           + D  G+ F VQ++    GK
Sbjct: 131 VFDKKGNSFLVQSIVQAEGK 150

[Close]

BLAST of MELO3C004802T1 vs. NCBI nr
Match: gi|700195958|gb|KGN51135.1| (hypothetical protein Csa_5G465580 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-21
Identity = 51/123 (41.46%), Postives = 76/123 (61.79%), Query Frame = 1


Query: 4   SFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPSYGG 63
           + ++  FHA+KA+V  ++     LLC N  W+TIG FYV+FE W+  KHA P ++ SY G
Sbjct: 200 NITYKLFHAEKAMVFLEEKNMVNLLCKNRGWTTIGKFYVKFEAWNISKHATPKVLSSYVG 259

Query: 64  WVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPTNIS 123
           WV F+GIPL AW   +F QIG  C GF++VA+ T+  + +++     +Y   S +  N S
Sbjct: 260 WVKFKGIPLHAWNYSSFYQIGEVCGGFVEVARITRDTEWVMKKATISQYRPLSKLKENGS 319

Query: 124 IKD 127
            K+
Sbjct: 320 RKE 322

[Close]

BLAST of MELO3C004802T1 vs. NCBI nr
Match: gi|658031994|ref|XP_008351490.1| (PREDICTED: uncharacterized protein LOC103414909 [Malus domestica])

HSP 1 Score: 76.6 bits (187), Expect = 3.8e-11
Identity = 39/121 (32.23%), Postives = 63/121 (52.07%), Query Frame = 1


Query: 6   SFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPSYGGWV 65
           S  PF  +KA+   K+  +A  +      S IG   V    W      +   V SYGGW+
Sbjct: 863 SLVPFQCNKALFVCKNEEEAAQIAQIGVLSMIGFPEVELSGWWESIKPSERKVVSYGGWI 922

Query: 66  SFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPTNISIK 125
           +  G+P   W  D F +IG+AC G +++ ++T   + L+EA+I+I+ N + FIP  + + 
Sbjct: 923 ALEGLPPHLWTNDFFHEIGDACGGLVEIBRKTADFEFLLEAKIRIKQNNTGFIPEFVEVA 982

Query: 126 D 127
           D
Sbjct: 983 D 983

The following BLAST results are available for this feature:

BLAST of MELO3C004802T1 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GB30_CUCME	4.4e-38	48.25	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0KFP0_CUCSA	5.0e-34	44.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G367105 PE=4 SV=1	[more]
A0A0A0KNC5_CUCSA	7.5e-22	41.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G465580 PE=4 SV=1	[more]
A0A0A0K120_CUCSA	8.6e-10	44.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G004025 PE=4 SV=1	[more]
A5BME0_VITVI	2.0e-06	33.70	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011400 PE=4 SV=1	[more]

BLAST of MELO3C004802T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659071590\|ref\|XP_008460776.1\|	2.1e-41	56.34	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis me...	[more]
gi\|307135793\|gb\|ADN33672.1\|	6.3e-38	48.25	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|700192460\|gb\|KGN47664.1\|	7.2e-34	44.29	hypothetical protein Csa_6G367105 [Cucumis sativus]	[more]
gi\|700195958\|gb\|KGN51135.1\|	1.1e-21	41.46	hypothetical protein Csa_5G465580 [Cucumis sativus]	[more]
gi\|658031994\|ref\|XP_008351490.1\|	3.8e-11	32.23	PREDICTED: uncharacterized protein LOC103414909 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR025558	DUF4283

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C004802	MELO3C004802	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C004802T1	MELO3C004802T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C004802T1.cds1	MELO3C004802T1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025558	Domain of unknown function DUF4283	PFAM	PF14111	DUF4283	coord: 11..110 score: 2.2