MELO3C004802 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C004802
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	RNA recognition motif
Location	chr12 : 9914587 .. 9915018 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACTTCTTTCTCTTTCTCTCCATTTCATGCAGACAAAGCCATTGTCACTTTCAAAGATCCAACACAAGCAACCCTTCTATGCAACAACAATGAATGGTCCACAATAGGAAGTTTTTATGTCAGATTTGAAAAATGGTCATTCAAAAAACACGCGGCCCCAATACTGGTTCCTAGCTACGGTGGATGGGTAAGCTTTAGAGGCATTCCTCTTTCAGCTTGGAAGACTGATACTTTCATCCAAATTGGGAATGCTTGTAGGGGCTTTCTGGATGTGGCTAAGGAAACAAAGACTAGAAAAAATCTTGTGGAAGCCAGAATCAAAATCAGATACAATTATTCTAGCTTCATACCAACAAATATAAGCATCAAAGACGACAACGGACACCTCTTCTTTGTTCAAGCAGTTACTCATGAAAATGGAAAGTGA

mRNA sequence

ATGGAAACTTCTTTCTCTTTCTCTCCATTTCATGCAGACAAAGCCATTGTCACTTTCAAAGATCCAACACAAGCAACCCTTCTATGCAACAACAATGAATGGTCCACAATAGGAAGTTTTTATGTCAGATTTGAAAAATGGTCATTCAAAAAACACGCGGCCCCAATACTGGTTCCTAGCTACGGTGGATGGGTAAGCTTTAGAGGCATTCCTCTTTCAGCTTGGAAGACTGATACTTTCATCCAAATTGGGAATGCTTGTAGGGGCTTTCTGGATGTGGCTAAGGAAACAAAGACTAGAAAAAATCTTGTGGAAGCCAGAATCAAAATCAGATACAATTATTCTAGCTTCATACCAACAAATATAAGCATCAAAGACGACAACGGACACCTCTTCTTTGTTCAAGCAGTTACTCATGAAAATGGAAAGTGA

Coding sequence (CDS)

ATGGAAACTTCTTTCTCTTTCTCTCCATTTCATGCAGACAAAGCCATTGTCACTTTCAAAGATCCAACACAAGCAACCCTTCTATGCAACAACAATGAATGGTCCACAATAGGAAGTTTTTATGTCAGATTTGAAAAATGGTCATTCAAAAAACACGCGGCCCCAATACTGGTTCCTAGCTACGGTGGATGGGTAAGCTTTAGAGGCATTCCTCTTTCAGCTTGGAAGACTGATACTTTCATCCAAATTGGGAATGCTTGTAGGGGCTTTCTGGATGTGGCTAAGGAAACAAAGACTAGAAAAAATCTTGTGGAAGCCAGAATCAAAATCAGATACAATTATTCTAGCTTCATACCAACAAATATAAGCATCAAAGACGACAACGGACACCTCTTCTTTGTTCAAGCAGTTACTCATGAAAATGGAAAGTGA

Protein sequence

METSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPSYGGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPTNISIKDDNGHLFFVQAVTHENGK*

Homology

[Close]

BLAST of MELO3C004802 vs. TrEMBL
Match: E5GB30_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 4.4e-38
Identity = 69/143 (48.25%), Postives = 101/143 (70.63%), Query Frame = 1


Query: 1   METSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPS 60
           ++T+ S+ PFHA+KA++ FKD  QA L+C N  W+T+G FYV+FE+W+ K HA+P  VPS
Sbjct: 154 LDTTVSYKPFHANKALICFKDFEQANLICKNKGWTTVGRFYVKFEEWNQKDHASPKFVPS 213

Query: 61  YGGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPT 120
           YGGW+  R +PL AW  ++F+QIG+AC GF++VAKET+   +L+EA I+++ NYS FIP 
Sbjct: 214 YGGWIKVRAVPLHAWNLESFVQIGDACGGFMEVAKETRELTDLIEASIRVKDNYSGFIPA 273

Query: 121 NISIKDDNGHLFFVQAVTHENGK 144
            I + D     + +Q +    GK
Sbjct: 274 FIKLIDKEERSYIIQVIVKTEGK 296

[Close]

BLAST of MELO3C004802 vs. TrEMBL
Match: A0A0A0KFP0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G367105 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 5.0e-34
Identity = 62/140 (44.29%), Postives = 98/140 (70.00%), Query Frame = 1


Query: 4   SFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPSYGG 63
           SF++  FHA+KA+V+F++  QAT++C N  W+ +  FY++FE+W+  KH +P LVPSYGG
Sbjct: 11  SFTYKSFHAEKALVSFENKYQATIMCKNRGWNPVDKFYIKFEEWNTMKHGSPKLVPSYGG 70

Query: 64  WVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPTNIS 123
           WV+FRGI + AW  +TF QIG AC  F+++ +E K +  + +A +K++ N++ FIP  I+
Sbjct: 71  WVNFRGILMHAWDMETFTQIGEACGSFIEITREIKKQVEIRQAMLKVKENFTGFIPAFIN 130

Query: 124 IKDDNGHLFFVQAVTHENGK 144
           + D  G+ F VQ++    GK
Sbjct: 131 VFDKKGNSFLVQSIVQAEGK 150

[Close]

BLAST of MELO3C004802 vs. TrEMBL
Match: A0A0A0KNC5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G465580 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 7.5e-22
Identity = 51/123 (41.46%), Postives = 76/123 (61.79%), Query Frame = 1


Query: 4   SFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPSYGG 63
           + ++  FHA+KA+V  ++     LLC N  W+TIG FYV+FE W+  KHA P ++ SY G
Sbjct: 200 NITYKLFHAEKAMVFLEEKNMVNLLCKNRGWTTIGKFYVKFEAWNISKHATPKVLSSYVG 259

Query: 64  WVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPTNIS 123
           WV F+GIPL AW   +F QIG  C GF++VA+ T+  + +++     +Y   S +  N S
Sbjct: 260 WVKFKGIPLHAWNYSSFYQIGEVCGGFVEVARITRDTEWVMKKATISQYRPLSKLKENGS 319

Query: 124 IKD 127
            K+
Sbjct: 320 RKE 322

[Close]

BLAST of MELO3C004802 vs. TrEMBL
Match: A0A0A0K120_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G004025 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.6e-10
Identity = 28/63 (44.44%), Postives = 42/63 (66.67%), Query Frame = 1


Query: 1   METSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPS 60
           ++ + ++ PFHA+K  VT +D     LLC N  W+T+G +YV+FE  +  KHA+P  +PS
Sbjct: 104 LDLNITYKPFHAEKVAVTIEDKNLVNLLCKNRGWTTVGKYYVKFEASNIAKHASPKCLPS 163

Query: 61  YGG 64
           YGG
Sbjct: 164 YGG 166

[Close]

BLAST of MELO3C004802 vs. TrEMBL
Match: A5BME0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011400 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-06
Identity = 31/92 (33.70%), Postives = 47/92 (51.09%), Query Frame = 1


Query: 37  IGSFYVRFEKWSFKKHAAPILVPSYGGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKE 96
           +G F +R EKWS +             WV   G+P+S W  D   +IG  C GF+D+  +
Sbjct: 169 VGGFVMRLEKWSRRTGCLTEEEKEREAWVRIVGLPISLWNRDILSKIGEGCGGFVDIDVK 228

Query: 97  TKTRKNLVEARIKIRYNYSSFIPTNISIKDDN 129
           T+ ++ L  ARI++R N    IP  + I  +N
Sbjct: 229 TERKEELQWARIRVRINEGK-IPKMVEIWVEN 259

[Close]

BLAST of MELO3C004802 vs. NCBI nr
Match: gi|659071590|ref|XP_008460776.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis melo])

HSP 1 Score: 177.2 bits (448), Expect = 2.1e-41
Identity = 80/142 (56.34%), Postives = 100/142 (70.42%), Query Frame = 1


Query: 2   ETSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPSY 61
           E SF+++ FHADKA+V F     A LLC N  W+T+G + VRFEKW   +HA P L+PSY
Sbjct: 228 EESFTYNAFHADKALVHFSSSIPANLLCQNKGWTTVGKYSVRFEKWCPIQHATPKLIPSY 287

Query: 62  GGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPTN 121
           GGW  FRGIPL  W   TF QIG AC G + VA+ET++ KNL+EA+IKIRYNYS F+P N
Sbjct: 288 GGWTIFRGIPLHLWNMKTFQQIGKACGGLIKVAEETRSAKNLIEAKIKIRYNYSGFLPAN 347

Query: 122 ISIKDDNGHLFFVQAVTHENGK 144
           + I D+ G+ F +Q VTH  GK
Sbjct: 348 VRIFDNEGNKFSIQVVTHPEGK 369

[Close]

BLAST of MELO3C004802 vs. NCBI nr
Match: gi|307135793|gb|ADN33672.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 165.6 bits (418), Expect = 6.3e-38
Identity = 69/143 (48.25%), Postives = 101/143 (70.63%), Query Frame = 1


Query: 1   METSFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPS 60
           ++T+ S+ PFHA+KA++ FKD  QA L+C N  W+T+G FYV+FE+W+ K HA+P  VPS
Sbjct: 154 LDTTVSYKPFHANKALICFKDFEQANLICKNKGWTTVGRFYVKFEEWNQKDHASPKFVPS 213

Query: 61  YGGWVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPT 120
           YGGW+  R +PL AW  ++F+QIG+AC GF++VAKET+   +L+EA I+++ NYS FIP 
Sbjct: 214 YGGWIKVRAVPLHAWNLESFVQIGDACGGFMEVAKETRELTDLIEASIRVKDNYSGFIPA 273

Query: 121 NISIKDDNGHLFFVQAVTHENGK 144
            I + D     + +Q +    GK
Sbjct: 274 FIKLIDKEERSYIIQVIVKTEGK 296

[Close]

BLAST of MELO3C004802 vs. NCBI nr
Match: gi|700192460|gb|KGN47664.1| (hypothetical protein Csa_6G367105 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 7.2e-34
Identity = 62/140 (44.29%), Postives = 98/140 (70.00%), Query Frame = 1


Query: 4   SFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPSYGG 63
           SF++  FHA+KA+V+F++  QAT++C N  W+ +  FY++FE+W+  KH +P LVPSYGG
Sbjct: 11  SFTYKSFHAEKALVSFENKYQATIMCKNRGWNPVDKFYIKFEEWNTMKHGSPKLVPSYGG 70

Query: 64  WVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPTNIS 123
           WV+FRGI + AW  +TF QIG AC  F+++ +E K +  + +A +K++ N++ FIP  I+
Sbjct: 71  WVNFRGILMHAWDMETFTQIGEACGSFIEITREIKKQVEIRQAMLKVKENFTGFIPAFIN 130

Query: 124 IKDDNGHLFFVQAVTHENGK 144
           + D  G+ F VQ++    GK
Sbjct: 131 VFDKKGNSFLVQSIVQAEGK 150

[Close]

BLAST of MELO3C004802 vs. NCBI nr
Match: gi|700195958|gb|KGN51135.1| (hypothetical protein Csa_5G465580 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-21
Identity = 51/123 (41.46%), Postives = 76/123 (61.79%), Query Frame = 1


Query: 4   SFSFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPSYGG 63
           + ++  FHA+KA+V  ++     LLC N  W+TIG FYV+FE W+  KHA P ++ SY G
Sbjct: 200 NITYKLFHAEKAMVFLEEKNMVNLLCKNRGWTTIGKFYVKFEAWNISKHATPKVLSSYVG 259

Query: 64  WVSFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPTNIS 123
           WV F+GIPL AW   +F QIG  C GF++VA+ T+  + +++     +Y   S +  N S
Sbjct: 260 WVKFKGIPLHAWNYSSFYQIGEVCGGFVEVARITRDTEWVMKKATISQYRPLSKLKENGS 319

Query: 124 IKD 127
            K+
Sbjct: 320 RKE 322

[Close]

BLAST of MELO3C004802 vs. NCBI nr
Match: gi|658031994|ref|XP_008351490.1| (PREDICTED: uncharacterized protein LOC103414909 [Malus domestica])

HSP 1 Score: 76.6 bits (187), Expect = 3.8e-11
Identity = 39/121 (32.23%), Postives = 63/121 (52.07%), Query Frame = 1


Query: 6   SFSPFHADKAIVTFKDPTQATLLCNNNEWSTIGSFYVRFEKWSFKKHAAPILVPSYGGWV 65
           S  PF  +KA+   K+  +A  +      S IG   V    W      +   V SYGGW+
Sbjct: 863 SLVPFQCNKALFVCKNEEEAAQIAQIGVLSMIGFPEVELSGWWESIKPSERKVVSYGGWI 922

Query: 66  SFRGIPLSAWKTDTFIQIGNACRGFLDVAKETKTRKNLVEARIKIRYNYSSFIPTNISIK 125
           +  G+P   W  D F +IG+AC G +++ ++T   + L+EA+I+I+ N + FIP  + + 
Sbjct: 923 ALEGLPPHLWTNDFFHEIGDACGGLVEIBRKTADFEFLLEAKIRIKQNNTGFIPEFVEVA 982

Query: 126 D 127
           D
Sbjct: 983 D 983

The following BLAST results are available for this feature:

BLAST of MELO3C004802 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GB30_CUCME	4.4e-38	48.25	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0KFP0_CUCSA	5.0e-34	44.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G367105 PE=4 SV=1	[more]
A0A0A0KNC5_CUCSA	7.5e-22	41.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G465580 PE=4 SV=1	[more]
A0A0A0K120_CUCSA	8.6e-10	44.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G004025 PE=4 SV=1	[more]
A5BME0_VITVI	2.0e-06	33.70	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011400 PE=4 SV=1	[more]

BLAST of MELO3C004802 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659071590\|ref\|XP_008460776.1\|	2.1e-41	56.34	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis me...	[more]
gi\|307135793\|gb\|ADN33672.1\|	6.3e-38	48.25	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|700192460\|gb\|KGN47664.1\|	7.2e-34	44.29	hypothetical protein Csa_6G367105 [Cucumis sativus]	[more]
gi\|700195958\|gb\|KGN51135.1\|	1.1e-21	41.46	hypothetical protein Csa_5G465580 [Cucumis sativus]	[more]
gi\|658031994\|ref\|XP_008351490.1\|	3.8e-11	32.23	PREDICTED: uncharacterized protein LOC103414909 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025558	DUF4283

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C004802T1	MELO3C004802T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025558	Domain of unknown function DUF4283	PFAM	PF14111	DUF4283	coord: 11..110 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C004802	Silver-seed gourd	carmeB0171
MELO3C004802	Cucumber (Chinese Long) v3	cucmeB010
MELO3C004802	Watermelon (97103) v2	mewmbB143
MELO3C004802	Wax gourd	mewgoB174
MELO3C004802	Cucumber (Gy14) v1	cgymeB365
MELO3C004802	Cucurbita maxima (Rimu)	cmameB148
MELO3C004802	Cucurbita maxima (Rimu)	cmameB194
MELO3C004802	Cucurbita moschata (Rifu)	cmomeB138
MELO3C004802	Cucurbita moschata (Rifu)	cmomeB181
MELO3C004802	Wild cucumber (PI 183967)	cpimeB011
MELO3C004802	Cucumber (Chinese Long) v2	cumeB015
MELO3C004802	Watermelon (Charleston Gray)	mewcgB141
MELO3C004802	Watermelon (97103) v1	mewmB161
MELO3C004802	Cucurbita pepo (Zucchini)	cpemeB480
MELO3C004802	Cucurbita pepo (Zucchini)	cpemeB745
MELO3C004802	Bottle gourd (USVL1VR-Ls)	lsimeB244
MELO3C004802	Cucumber (Gy14) v2	cgybmeB010