MELO3C003999T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C003999T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	60S acidic ribosomal protein P3
Location	chr5 : 21385098 .. 21386436 (-)
Sequence length	715

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AACATAAAAACCAAACACAATCCGTAGGAGAGAGCCGTCCACTCCATACTCACTCCCTAATTCTCTTCAACCCAAATCTCCATTCCAACATCGAACCAAACAATGGGAGTTTTCACCTTCGTCTGTCGGAGCTCCGGTGGCAAGTGGACCGCCAATCAGTATTCCGGTGACCTTGAAGGCTCCGCCGACTCCACCTACGAGCTCCAGAGGAAACTCGTTCAATCTGCTCTCTCCGTCGATTCCTCCGGTGGCGTTCAGTCCTCTTTCTCCTTCATTACTCCTACCTCCGCCGTTTTCCAGGTATTCATCGTTTTCTCTGTTATTCTGGGTTTTCACTCCTCTTGATCTGATCCGTTTACTCTTCAATCTATAACTATAAACTCGCCTACTCAGTTTTTGTTTGATTGTTTAGTCTACTTAGTAATGTTTTTGTATGATGAATATGTATCTTTTATCCCTTTTTTTTTTTCGTGTAATGGGGGTCGATTGTTTTTCTAGTTTTTACCTATTTTGTGTTCGTTTGAAACTTGGGCATGATGTTTGATTTTTATGTTGGCGTCTTGACAATTGTGATTATGGGTTTTGGGTACGTGATCGGCTAAGCAACTATTGATTATGGGAATTTGCTAAATATATGGACTTATGATGAATTAAAGCATTTTTGGCGATCATCCTTTTAGTGTGTTCATCCATGAGTTTCTTGATTAGTGTACTTCTTATCTGCACTCACTCATTGAATTTTAAGAAGATCTATAACATGTTTCAAGCAAAAATGTGTAATCCCCAGTCATAGATAGTTCTTCTGAGATTGAGGTTTTTATTTAAGCTCTTATTTATGATTTATGACATCTCCTCAAGTAGTTTCCTCCTTGCTTGTCTGTTGTTATCTGTTGTTTTTGCATGGTTTAAACATTAATATTTCAGGTGATTGTTGGCGGTGGAGGTGGTGGTGGTTTCATAGGCGGTGGGGCTGCAGCTGCCCCTGCTGGAGGTGATGCTCCAGCTGCTGCAGAAGCCCCAGCTGAGAAGAAGGAAGAGGTGAAGGAAGAGAGTGATGATGAAGACCTTGGCCTATCACTTTTTGATTAGTTTGGTATTAATTACTTGTTATTGTTTTTATCAAACCTCAGAGTTTGTAGCACTCAGGTTTTCTTTTCTGGAAATTACGTCTATGCATTTACTTGAATTTGCAAGTTCAGTTGATGTTCTTGTTTAAGGACGTAAATTTTGTTACTGACCCTTGTCAAATGGTTGAGAATTAGATATGTTATTTTGTTATTTCGTTTGGGAAGTTACTTACTGATTTCATCCATCATAGATTTTATCTATTTGTTGTTAG

mRNA sequence

AACATAAAAACCAAACACAATCCGTAGGAGAGAGCCGTCCACTCCATACTCACTCCCTAATTCTCTTCAACCCAAATCTCCATTCCAACATCGAACCAAACAATGGGAGTTTTCACCTTCGTCTGTCGGAGCTCCGGTGGCAAGTGGACCGCCAATCAGTATTCCGGTGACCTTGAAGGCTCCGCCGACTCCACCTACGAGCTCCAGAGGAAACTCGTTCAATCTGCTCTCTCCGTCGATTCCTCCGGTGGCGTTCAGTCCTCTTTCTCCTTCATTACTCCTACCTCCGCCGTTTTCCAGGTGATTGTTGGCGGTGGAGGTGGTGGTGGTTTCATAGGCGGTGGGGCTGCAGCTGCCCCTGCTGGAGGTGATGCTCCAGCTGCTGCAGAAGCCCCAGCTGAGAAGAAGGAAGAGGTGAAGGAAGAGAGTGATGATGAAGACCTTGGCCTATCACTTTTTGATTAGTTTGGTATTAATTACTTGTTATTGTTTTTATCAAACCTCAGAGTTTGTAGCACTCAGGTTTTCTTTTCTGGAAATTACGTCTATGCATTTACTTGAATTTGCAAGTTCAGTTGATGTTCTTGTTTAAGGACGTAAATTTTGTTACTGACCCTTGTCAAATGGTTGAGAATTAGATATGTTATTTTGTTATTTCGTTTGGGAAGTTACTTACTGATTTCATCCATCATAGATTTTATCTATTTGTTGTTAG

Coding sequence (CDS)

ATGGGAGTTTTCACCTTCGTCTGTCGGAGCTCCGGTGGCAAGTGGACCGCCAATCAGTATTCCGGTGACCTTGAAGGCTCCGCCGACTCCACCTACGAGCTCCAGAGGAAACTCGTTCAATCTGCTCTCTCCGTCGATTCCTCCGGTGGCGTTCAGTCCTCTTTCTCCTTCATTACTCCTACCTCCGCCGTTTTCCAGGTGATTGTTGGCGGTGGAGGTGGTGGTGGTTTCATAGGCGGTGGGGCTGCAGCTGCCCCTGCTGGAGGTGATGCTCCAGCTGCTGCAGAAGCCCCAGCTGAGAAGAAGGAAGAGGTGAAGGAAGAGAGTGATGATGAAGACCTTGGCCTATCACTTTTTGATTAG

Protein sequence

MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITPTSAVFQVIVGGGGGGGFIGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSLFD*

Homology

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BLAST of MELO3C003999T1 vs. Swiss-Prot
Match: RLA32_ARATH (60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana GN=RPP3B PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.8e-38
Identity = 76/119 (63.87%), Postives = 90/119 (75.63%), Query Frame = 1


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGVF+FVC+S GG+WTA Q+ GDLE SA STY+LQRKLVQ+ALS DSSGGVQSSFS ++P
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120
           TSAVF V++GGGGGGGF  GG AAA  GG   AAA    E+K++ + E ++ D G  LF
Sbjct: 61  TSAVFVVVIGGGGGGGFAAGGGAAAGGGGGGEAAAATKEEEKKKEESEEEEGDFGFDLF 119

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BLAST of MELO3C003999T1 vs. Swiss-Prot
Match: RLA31_ARATH (60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana GN=RPP3A PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.0e-36
Identity = 78/119 (65.55%), Postives = 89/119 (74.79%), Query Frame = 1


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGVFTFVC++ GG W+A Q+ G+LE SA STYELQRKLVQ +LS DSSGGVQSSFS ++P
Sbjct: 1   MGVFTFVCKNGGGAWSAKQHEGELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVSP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120
           TSAVFQVIVGGGGGGGF  GGAA++  G    AAA    EKK+E  EE ++ D G  LF
Sbjct: 61  TSAVFQVIVGGGGGGGFSAGGAASSGGGAGEAAAAPKEDEKKKEESEE-EEGDFGFDLF 118

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BLAST of MELO3C003999T1 vs. Swiss-Prot
Match: RLA3_ORYSJ (60S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica GN=Os06g0701400 PE=3 SV=3)

HSP 1 Score: 150.2 bits (378), Expect = 1.4e-35
Identity = 78/120 (65.00%), Postives = 89/120 (74.17%), Query Frame = 1


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGV+TFVCRSSG +WTA Q  G+LE SA + YELQR+LV +A + DS+ GVQSSFS ++P
Sbjct: 1   MGVYTFVCRSSGDEWTAKQLKGELEASAATPYELQRRLVAAASAADSAAGVQSSFSMVSP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSLFD 120
           +SAVFQVI+G  GGG  IGGGAAA  A G A A A    EKKEE KEES+D DLG SLFD
Sbjct: 61  SSAVFQVIIGAVGGGAAIGGGAAAGAASGGAAAEAPKAEEKKEEEKEESED-DLGFSLFD 119

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BLAST of MELO3C003999T1 vs. Swiss-Prot
Match: RLA3_MAIZE (60S acidic ribosomal protein P3 OS=Zea mays GN=RPP3A PE=1 SV=3)

HSP 1 Score: 145.6 bits (366), Expect = 3.5e-34
Identity = 74/123 (60.16%), Postives = 93/123 (75.61%), Query Frame = 1


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGV+TFVCR++GG+WTA Q+SG++E SA + YELQR+LV +A + DS  GVQSSFS +TP
Sbjct: 1   MGVYTFVCRNNGGEWTAKQHSGEIEASAATPYELQRRLVAAASAADSRYGVQSSFSMVTP 60

Query: 61  TSAVFQVIVGGGGGGGFI---GGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLS 120
           +SAVFQVIVG  GGG  +   GGG  AA +GG   AAAEAP E+K+E ++E  D+D+G S
Sbjct: 61  SSAVFQVIVGAVGGGAMMVSGGGGGGAAASGG---AAAEAPKEEKKEEEKEESDDDMGFS 120

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BLAST of MELO3C003999T1 vs. Swiss-Prot
Match: RLA1_MAIZE (60S acidic ribosomal protein P1 OS=Zea mays GN=RPP1A PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-08
Identity = 35/52 (67.31%), Postives = 35/52 (67.31%), Query Frame = 1


Query: 69  VGGGGGGGFIGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSLFD 121
           VG GGG   +   AAAAPAGG A AAA A  EKKEE KEESDD D+G SLFD
Sbjct: 62  VGSGGGAAPV---AAAAPAGGAAAAAAPAVEEKKEEAKEESDD-DMGFSLFD 109

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BLAST of MELO3C003999T1 vs. TrEMBL
Match: A0A0A0LJB2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G060400 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 3.0e-56
Identity = 116/121 (95.87%), Postives = 117/121 (96.69%), Query Frame = 1


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  TSAVFQVIVGGGGGGGF-IGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120
           +SAVFQVIVGGG GGGF  GGGAAAAPAGG APAAAEAPAEKKEEVKEESDDEDLGLSLF
Sbjct: 61  SSAVFQVIVGGGSGGGFSAGGGAAAAPAGGAAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120

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BLAST of MELO3C003999T1 vs. TrEMBL
Match: A0A059CSI3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C02261 PE=3 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 2.6e-44
Identity = 96/121 (79.34%), Postives = 106/121 (87.60%), Query Frame = 1


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGVFTFVCRSSG +WTA Q SGDLE  A ST+ELQRKLVQSA++ DSSGGVQSSFS +TP
Sbjct: 1   MGVFTFVCRSSGDEWTAKQVSGDLEACAASTFELQRKLVQSAVAADSSGGVQSSFSLVTP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGG-AAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120
           +SAVFQVI+GGGGGGGFIGGG AAAAPAGG APAA  APAE+K+E KEESDD D+G SLF
Sbjct: 61  SSAVFQVIIGGGGGGGFIGGGAAAAAPAGGAAPAAEAAPAEEKKEEKEESDD-DMGFSLF 120

[Close]

BLAST of MELO3C003999T1 vs. TrEMBL
Match: A7LIT3_9ROSI (Acidic ribosomal protein P3 OS=Corchorus olitorius PE=2 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.0e-43
Identity = 92/120 (76.67%), Postives = 104/120 (86.67%), Query Frame = 1


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGV+TFVC+SS G+WTA Q+ G+LEGSA STYELQRKLVQ+A + DSSGGV SSFS ITP
Sbjct: 1   MGVYTFVCKSSAGEWTAKQFEGELEGSAPSTYELQRKLVQAAAAADSSGGVCSSFSLITP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSLFD 120
           TSAVFQVI+GGGGGGGFIGGGAAAAP+GG APAA    AE+K+E KEESDD D+G SLFD
Sbjct: 61  TSAVFQVIIGGGGGGGFIGGGAAAAPSGGAAPAAEAPAAEEKKEEKEESDD-DMGFSLFD 119

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BLAST of MELO3C003999T1 vs. TrEMBL
Match: W9SDZ4_9ROSA (60S acidic ribosomal protein P3-2 OS=Morus notabilis GN=L484_009210 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 5.0e-43
Identity = 98/122 (80.33%), Postives = 107/122 (87.70%), Query Frame = 1


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGVFTFV RSSGG+WTA Q+ GDLE SA STY+LQRKLVQSALS DSSGGVQ++FS ITP
Sbjct: 1   MGVFTFVLRSSGGEWTAKQHKGDLEASAASTYDLQRKLVQSALSQDSSGGVQTAFSLITP 60

Query: 61  TSAVFQVIVGGGGGGGFI-GGGAAAAPAGGDAPAAAEA-PAEKKEEVKEESDDEDLGLSL 120
           +SAVFQVIVGGGGGGGFI GGGAAAAPAGG   AAAEA PAE+K+E KEESDD D+G SL
Sbjct: 61  SSAVFQVIVGGGGGGGFIAGGGAAAAPAGGAGAAAAEAPPAEEKKEEKEESDD-DMGFSL 120

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BLAST of MELO3C003999T1 vs. TrEMBL
Match: A5BBF0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010073 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 6.5e-43
Identity = 94/122 (77.05%), Postives = 104/122 (85.25%), Query Frame = 1


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGVFTFVCRSSG +WTA Q +GDLE SA STY+LQRK VQSALS DSSGGVQSSFS++TP
Sbjct: 1   MGVFTFVCRSSGKEWTAKQMNGDLEESAASTYDLQRKCVQSALSADSSGGVQSSFSYVTP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGG--AAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSL 120
           +S VFQVIVGGGGGGGF GGG  AAAAP+GG APAA   PAE+K+E KEESDD D+G SL
Sbjct: 61  SSGVFQVIVGGGGGGGFFGGGGAAAAAPSGGGAPAADAPPAEEKKEEKEESDD-DMGFSL 120

[Close]

BLAST of MELO3C003999T1 vs. TAIR10
Match: AT5G57290.1 (AT5G57290.1 60S acidic ribosomal protein family)

HSP 1 Score: 159.8 bits (403), Expect = 1.0e-39
Identity = 76/119 (63.87%), Postives = 90/119 (75.63%), Query Frame = 1


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGVF+FVC+S GG+WTA Q+ GDLE SA STY+LQRKLVQ+ALS DSSGGVQSSFS ++P
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120
           TSAVF V++GGGGGGGF  GG AAA  GG   AAA    E+K++ + E ++ D G  LF
Sbjct: 61  TSAVFVVVIGGGGGGGFAAGGGAAAGGGGGGEAAAATKEEEKKKEESEEEEGDFGFDLF 119

[Close]

BLAST of MELO3C003999T1 vs. TAIR10
Match: AT4G25890.1 (AT4G25890.1 60S acidic ribosomal protein family)

HSP 1 Score: 154.1 bits (388), Expect = 5.6e-38
Identity = 78/119 (65.55%), Postives = 89/119 (74.79%), Query Frame = 1


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGVFTFVC++ GG W+A Q+ G+LE SA STYELQRKLVQ +LS DSSGGVQSSFS ++P
Sbjct: 1   MGVFTFVCKNGGGAWSAKQHEGELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVSP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120
           TSAVFQVIVGGGGGGGF  GGAA++  G    AAA    EKK+E  EE ++ D G  LF
Sbjct: 61  TSAVFQVIVGGGGGGGFSAGGAASSGGGAGEAAAAPKEDEKKKEESEE-EEGDFGFDLF 118

[Close]

BLAST of MELO3C003999T1 vs. TAIR10
Match: AT1G01100.1 (AT1G01100.1 60S acidic ribosomal protein family)

HSP 1 Score: 51.2 bits (121), Expect = 5.1e-07
Identity = 29/52 (55.77%), Postives = 29/52 (55.77%), Query Frame = 1


Query: 69  VGGGGGGGFIGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSLFD 121
           VG GGGGG     AAAAPA G   AAA A  EKK++   E  D DLG  LFD
Sbjct: 63  VGAGGGGG--APVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112

[Close]

BLAST of MELO3C003999T1 vs. TAIR10
Match: AT5G47700.1 (AT5G47700.1 60S acidic ribosomal protein family)

HSP 1 Score: 50.4 bits (119), Expect = 8.8e-07
Identity = 31/53 (58.49%), Postives = 31/53 (58.49%), Query Frame = 1


Query: 69  VGGGGGGGFIGGGAAAAPA-GGDAPAAAEAPAEKKEEVKEESDDEDLGLSLFD 121
           VG GGGGG     AAAAPA GG A AAA A  EKK++   E  D DLG  LFD
Sbjct: 63  VGAGGGGG--APVAAAAPAAGGGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of MELO3C003999T1 vs. TAIR10
Match: AT2G27710.1 (AT2G27710.1 60S acidic ribosomal protein family)

HSP 1 Score: 49.7 bits (117), Expect = 1.5e-06
Identity = 26/52 (50.00%), Postives = 31/52 (59.62%), Query Frame = 1


Query: 69  VGGGGGGGFIGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSLFD 121
           V  GGGGG     A +   GG   +AAE+  E+K+E KEESDD D+G SLF+
Sbjct: 65  VPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDD-DMGFSLFE 115

[Close]

BLAST of MELO3C003999T1 vs. NCBI nr
Match: gi|659069721|ref|XP_008451467.1| (PREDICTED: 60S acidic ribosomal protein P3-2 isoform X1 [Cucumis melo])

HSP 1 Score: 239.2 bits (609), Expect = 3.8e-60
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSLFD 120
           TSAVFQVIVGGGGGGGFIGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSLFD
Sbjct: 61  TSAVFQVIVGGGGGGGFIGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSLFD 120

[Close]

BLAST of MELO3C003999T1 vs. NCBI nr
Match: gi|449461181|ref|XP_004148320.1| (PREDICTED: 60S acidic ribosomal protein P3-2 [Cucumis sativus])

HSP 1 Score: 225.7 bits (574), Expect = 4.3e-56
Identity = 116/121 (95.87%), Postives = 117/121 (96.69%), Query Frame = 1


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  TSAVFQVIVGGGGGGGF-IGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120
           +SAVFQVIVGGG GGGF  GGGAAAAPAGG APAAAEAPAEKKEEVKEESDDEDLGLSLF
Sbjct: 61  SSAVFQVIVGGGSGGGFSAGGGAAAAPAGGAAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120

[Close]

BLAST of MELO3C003999T1 vs. NCBI nr
Match: gi|1009105682|ref|XP_015885559.1| (PREDICTED: 60S acidic ribosomal protein P3-2 [Ziziphus jujuba])

HSP 1 Score: 189.9 bits (481), Expect = 2.6e-45
Identity = 96/120 (80.00%), Postives = 107/120 (89.17%), Query Frame = 1


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGVFTFV R+SGG+WT  Q+SGDLE SA S+YELQRKLVQSALS DSSGGVQ+S+S ITP
Sbjct: 1   MGVFTFVVRNSGGEWTGKQHSGDLEASAPSSYELQRKLVQSALSADSSGGVQTSYSLITP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSLFD 120
           +SAVFQVIVGGGGGGGFIGGGAAAAP+GG APAA  APAE+K+E KEESDD D+G SLFD
Sbjct: 61  SSAVFQVIVGGGGGGGFIGGGAAAAPSGGAAPAAEAAPAEEKKEEKEESDD-DMGFSLFD 119

[Close]

BLAST of MELO3C003999T1 vs. NCBI nr
Match: gi|702299035|ref|XP_010048598.1| (PREDICTED: 60S acidic ribosomal protein P3-like [Eucalyptus grandis])

HSP 1 Score: 186.0 bits (471), Expect = 3.8e-44
Identity = 96/121 (79.34%), Postives = 106/121 (87.60%), Query Frame = 1


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGVFTFVCRSSG +WTA Q SGDLE  A ST+ELQRKLVQSA++ DSSGGVQSSFS +TP
Sbjct: 1   MGVFTFVCRSSGDEWTAKQVSGDLEACAASTFELQRKLVQSAVAADSSGGVQSSFSLVTP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGG-AAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120
           +SAVFQVI+GGGGGGGFIGGG AAAAPAGG APAA  APAE+K+E KEESDD D+G SLF
Sbjct: 61  SSAVFQVIIGGGGGGGFIGGGAAAAAPAGGAAPAAEAAPAEEKKEEKEESDD-DMGFSLF 120

[Close]

BLAST of MELO3C003999T1 vs. NCBI nr
Match: gi|154269254|gb|ABS72187.1| (acidic ribosomal protein P3 [Corchorus olitorius])

HSP 1 Score: 184.1 bits (466), Expect = 1.4e-43
Identity = 92/120 (76.67%), Postives = 104/120 (86.67%), Query Frame = 1


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGV+TFVC+SS G+WTA Q+ G+LEGSA STYELQRKLVQ+A + DSSGGV SSFS ITP
Sbjct: 1   MGVYTFVCKSSAGEWTAKQFEGELEGSAPSTYELQRKLVQAAAAADSSGGVCSSFSLITP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSLFD 120
           TSAVFQVI+GGGGGGGFIGGGAAAAP+GG APAA    AE+K+E KEESDD D+G SLFD
Sbjct: 61  TSAVFQVIIGGGGGGGFIGGGAAAAPSGGAAPAAEAPAAEEKKEEKEESDD-DMGFSLFD 119

The following BLAST results are available for this feature:

BLAST of MELO3C003999T1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RLA32_ARATH	1.8e-38	63.87	60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana GN=RPP3B PE=2 SV=1	[more]
RLA31_ARATH	1.0e-36	65.55	60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana GN=RPP3A PE=3 SV=1	[more]
RLA3_ORYSJ	1.4e-35	65.00	60S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica GN=Os06g0701400 ...	[more]
RLA3_MAIZE	3.5e-34	60.16	60S acidic ribosomal protein P3 OS=Zea mays GN=RPP3A PE=1 SV=3	[more]
RLA1_MAIZE	2.6e-08	67.31	60S acidic ribosomal protein P1 OS=Zea mays GN=RPP1A PE=1 SV=1	[more]

BLAST of MELO3C003999T1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJB2_CUCSA	3.0e-56	95.87	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G060400 PE=4 SV=1	[more]
A0A059CSI3_EUCGR	2.6e-44	79.34	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C02261 PE=3 SV=1	[more]
A7LIT3_9ROSI	1.0e-43	76.67	Acidic ribosomal protein P3 OS=Corchorus olitorius PE=2 SV=1	[more]
W9SDZ4_9ROSA	5.0e-43	80.33	60S acidic ribosomal protein P3-2 OS=Morus notabilis GN=L484_009210 PE=3 SV=1	[more]
A5BBF0_VITVI	6.5e-43	77.05	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010073 PE=4 SV=1	[more]

BLAST of MELO3C003999T1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G57290.1	1.0e-39	63.87	60S acidic ribosomal protein family	[more]
AT4G25890.1	5.6e-38	65.55	60S acidic ribosomal protein family	[more]
AT1G01100.1	5.1e-07	55.77	60S acidic ribosomal protein family	[more]
AT5G47700.1	8.8e-07	58.49	60S acidic ribosomal protein family	[more]
AT2G27710.1	1.5e-06	50.00	60S acidic ribosomal protein family	[more]

BLAST of MELO3C003999T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659069721\|ref\|XP_008451467.1\|	3.8e-60	100.00	PREDICTED: 60S acidic ribosomal protein P3-2 isoform X1 [Cucumis melo]	[more]
gi\|449461181\|ref\|XP_004148320.1\|	4.3e-56	95.87	PREDICTED: 60S acidic ribosomal protein P3-2 [Cucumis sativus]	[more]
gi\|1009105682\|ref\|XP_015885559.1\|	2.6e-45	80.00	PREDICTED: 60S acidic ribosomal protein P3-2 [Ziziphus jujuba]	[more]
gi\|702299035\|ref\|XP_010048598.1\|	3.8e-44	79.34	PREDICTED: 60S acidic ribosomal protein P3-like [Eucalyptus grandis]	[more]
gi\|154269254\|gb\|ABS72187.1\|	1.4e-43	76.67	acidic ribosomal protein P3 [Corchorus olitorius]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006414	translational elongation
cellular_component	GO:0022626	cytosolic ribosome
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C003999	MELO3C003999	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C003999T1	MELO3C003999T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C003999T1.cds2	MELO3C003999T1.cds2	CDS
MELO3C003999T1.cds1	MELO3C003999T1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 76..119 score: 2.0