MELO3C003880.2.1 (mRNA) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C003880.2.1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Histone deacetylase complex subunit
Location	chr04 : 6083685 .. 6086552 (+)
Sequence length	1526

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATATTTATAATTAATATTTATAGTTAAAAGAAAAGAGAGGATGAATAGGAATAATAAGAAAGATGATTTTTGGTAAAGAATTGTATAATTTAAATTTTTACGTGGCGGATTGTAATTGGTTGGTTAAAGGACGTCGGGATTCGTAGCAATACACACCAATTAACAATTCAAACTCACTCTCATTATTTCTCTCTCTCACATAAAGCACACATTTTCTCTCTCTACTCTATCTCTCTCTCTCTCTCTCTACTCTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTACTCTGCTTTGTGTTTGTTGTCAACGAAAATTCCCAAATTTCTCTGCGATTTCCCTGTCTTTTGCCGCTGAAATTCCCAAAAACATGCTCTCACCTGCATGATCTTTCTGTATCCTCTAATTTCCCCCCTCTCTTTCTATTGCCTTTTGCTCCAATTCATCGCCGACGGATTTGGGAATGCTTGAAGCTGTGGAGAGCTCCGTCAATGGCGCCTTCTCCCACCTCCACAGTAGTGGTGACAGTAGTGAGGAGGAGCTTTCTGTTCTCCCTCGTCATACCAAAGTCGTTGTCACCGGAAACAATCGTACCAAATCGGTGCTCGTTGGACTTCAAGGCGTCGTTAAGAAGGCAGTTGGTTTGGGTGGATGGCATTGGCTGGTACGTCGCTTTCTTTAATTCACTTCTTATTGTTTTTATTTTTTATTTTGTTTTTTGAGTGAGTCTAGGCTACATTCAGTCTTGGTTGAATCAATTTTGAGTATTGATTAGGTTTTCCCCAATTCCCAATTCCCAATTCTGTTTTTTGGGATTTTTTAAAATAAATATTTAATCATTTTTGTTGTGGTTTCAAGTTATGATTGCATGCTTAATTTGTTTATTGCATCCATTTCGATTTCTGAATTTCTGTAGAAAAAATTTCAGCTATGAATTAATTGCATGTTCAATTTGACCTATGGATCTGGTGATTAGAGATATGGAGGTTTCTTTCACAATGTAAAATTCATTTATTGTAATTGAATTCGGGAAATTTTATTGAATTTGTGAGTTCATAATTTCTCGAATATTTTTAGATTCTTGTTCTGTTTCCTTTGGATATTCCTCCTACCAAGTGTAAAATTTATTTCCATGTTTATCTAGACGTCGTGTTCCTTGATGTTAGACTTAGAACAGTGTGATTCTTCTTTTGAAACCTGCAGGTCACCATGATTATAAATATAATCTAGGTTCAGCATTTAATTTTGAAATTAAAAAAATCCTCAGGTTCTCACGAATGGCATTGAAGTTAAGCTACAGAGAAACGCCCTCAGTGTAATTGAAGCACCAACCGGCAATGAGGATGATGATGATCTCGAATTTGAGAACTTACACTGGAATGGATCCGATATGGGTAAGTTTGGAATCACTTCTATTCTTGTTCACTGGATTGAATAAACAACATTGGATTGTTGATTCTTCAAATGGATTAGATTGGTGAATTTCGTAAGCTGGCATCAATTAAACATAGTAAAAAAGTATAAAGAAAGCTAGTTGTCCTCACTTTTCTTTCGATTCTGATTAGGGCATTCATAATTAAAACGCTTGCTTGTTTCGGGTAATTGTTTCATTGGTCCTCTGTAGTTGTTGTGGAATGATATACTTTTTAGGAATAGTGGTTGAGTTTGGTACTTTGGATTCTTTGCTCATTCACCTTTTGCTTTATTTGAAATCTTGTTGTGTCATTTATTCTTTTTCTCCTGGCCCCTCCCATGTTTTCTTTTCATAATGCTTTTGGTATTTTGATTTCCCAGCATCTGATGACACTCTAAAGTCCCATAGACCGAGACAAAGGGCACACAAATTGTCGGGATCATCCCTCAAAACAATCAGCCGATCGTTCTCATATGAATCACAGTCGAAGGGATCTATTTCCACCCCCCGTGGGTCCATGGTATGTAAGAAACGGACAATCGTTTCTTGTTGCATTTCAATGATATTGAGCTCATAATCTAAGTTGAGCCTTAACTAGTGATGTTCCCTGTGCAGAAAGTCGACCTCGGTAAACTTGAGATGTCTGCCTTGTGGAGATATTGGCGACACTTCAATCTTGTAAGTTACCGTGTATTTGATAGGCATGTTATAGTTTGCATGTTTGTACCACCATGACTGAGAGAGAGAATTCTATATCTTATAGGTGGATGCTTTTCCTAACCCATCAAAAGAGCAGTTGGTGGATGTTGTTCAAAGGCATTTCATGTCCCAGGTACTTAAGATTTCTTGATCTAATCCTTTATTTTTCAATCAATCGATGCTTGTGCCTATATCGGTGCTGTAATACTACATCCTGTACATGTTTGTTTACAATGCTTGTGCAGCAACTAGACGAGTTACAGGTGATTGTTGGGTTTGTCCACGCTGCAAAGAGACTCAAGACTGTCTGCAAATGACGAGTAAAGGATGTAACACCAAGTTCAATATTCATCCATTTCTAACAAAAAGAGAAAAAAAAAAAGAAAAAAACACCGGTACCACCCGAAATTCCCACTTCTTCCCCACTACATATATTAATGTTCCCTGTAATATAGGTATCGTGGCTTGTTATTGAGGTATTATTACCCTTTTGTTAGTGTAATTATGGTAGGTAAATATAGTATATAATTTATATAATGTACGCACGACTGGCTAATAGACCTACGAAAACTGAGAGAAGTCCTTACTGACTTCATTTTCCTAAACCTCGATCGAATGCTGACTTGGGAGAGTGGGTATCTTGAAATGAATGTGTATATTCTTTGAATGCTTTTTTTATGTTATTAGTTTGTCGGATACAACATTAAATTTGTTTAAATCTCAAATGTGGAGTATGTTGATTC

mRNA sequence

ATATTTATAATTAATATTTATAGTTAAAAGAAAAGAGAGGATGAATAGGAATAATAAGAAAGATGATTTTTGGTAAAGAATTGTATAATTTAAATTTTTACGTGGCGGATTGTAATTGGTTGGTTAAAGGACGTCGGGATTCGTAGCAATACACACCAATTAACAATTCAAACTCACTCTCATTATTTCTCTCTCTCACATAAAGCACACATTTTCTCTCTCTACTCTATCTCTCTCTCTCTCTCTCTCTTACTCTGCTTTGTGTTTGTTGTCAACGAAAATTCCCAAATTTCTCTGCGATTTCCCTGTCTTTTGCCGCTGAAATTCCCAAAAACATGCTCTCACCTGCATGATCTTTCTGTATCCTCTAATTTCCCCCCTCTCTTTCTATTGCCTTTTGCTCCAATTCATCGCCGACGGATTTGGGAATGCTTGAAGCTGTGGAGAGCTCCGTCAATGGCGCCTTCTCCCACCTCCACAGTAGTGGTGACAGTAGTGAGGAGGAGCTTTCTGTTCTCCCTCGTCATACCAAAGTCGTTGTCACCGGAAACAATCGTACCAAATCGGTGCTCGTTGGACTTCAAGGCGTCGTTAAGAAGGCAGTTGGTTTGGGTGGATGGCATTGGCTGGTTCTCACGAATGGCATTGAAGTTAAGCTACAGAGAAACGCCCTCAGTGTAATTGAAGCACCAACCGGCAATGAGGATGATGATGATCTCGAATTTGAGAACTTACACTGGAATGGATCCGATATGGCATCTGATGACACTCTAAAGTCCCATAGACCGAGACAAAGGGCACACAAATTGTCGGGATCATCCCTCAAAACAATCAGCCGATCGTTCTCATATGAATCACAGTCGAAGGGATCTATTTCCACCCCCCGTGGGTCCATGAAAGTCGACCTCGGTAAACTTGAGATGTCTGCCTTGTGGAGATATTGGCGACACTTCAATCTTGTGGATGCTTTTCCTAACCCATCAAAAGAGCAGTTGGTGGATGTTGTTCAAAGGCATTTCATGTCCCAGCAACTAGACGAGTTACAGGTGATTGTTGGGTTTGTCCACGCTGCAAAGAGACTCAAGACTGTCTGCAAATGACGAGTAAAGGATGTAACACCAAGTTCAATATTCATCCATTTCTAACAAAAAGAGAAAAAAAAAAAGAAAAAAACACCGGTACCACCCGAAATTCCCACTTCTTCCCCACTACATATATTAATGTTCCCTGTAATATAGGTATCGTGGCTTGTTATTGAGGTATTATTACCCTTTTGTTAGTGTAATTATGGTAGGTAAATATAGTATATAATTTATATAATGTACGCACGACTGGCTAATAGACCTACGAAAACTGAGAGAAGTCCTTACTGACTTCATTTTCCTAAACCTCGATCGAATGCTGACTTGGGAGAGTGGGTATCTTGAAATGAATGTGTATATTCTTTGAATGCTTTTTTTATGTTATTAGTTTGTCGGATACAACATTAAATTTGTTTAAATCTCAAATGTGGAGTATGTTGATTC

Coding sequence (CDS)

ATGCTTGAAGCTGTGGAGAGCTCCGTCAATGGCGCCTTCTCCCACCTCCACAGTAGTGGTGACAGTAGTGAGGAGGAGCTTTCTGTTCTCCCTCGTCATACCAAAGTCGTTGTCACCGGAAACAATCGTACCAAATCGGTGCTCGTTGGACTTCAAGGCGTCGTTAAGAAGGCAGTTGGTTTGGGTGGATGGCATTGGCTGGTTCTCACGAATGGCATTGAAGTTAAGCTACAGAGAAACGCCCTCAGTGTAATTGAAGCACCAACCGGCAATGAGGATGATGATGATCTCGAATTTGAGAACTTACACTGGAATGGATCCGATATGGCATCTGATGACACTCTAAAGTCCCATAGACCGAGACAAAGGGCACACAAATTGTCGGGATCATCCCTCAAAACAATCAGCCGATCGTTCTCATATGAATCACAGTCGAAGGGATCTATTTCCACCCCCCGTGGGTCCATGAAAGTCGACCTCGGTAAACTTGAGATGTCTGCCTTGTGGAGATATTGGCGACACTTCAATCTTGTGGATGCTTTTCCTAACCCATCAAAAGAGCAGTTGGTGGATGTTGTTCAAAGGCATTTCATGTCCCAGCAACTAGACGAGTTACAGGTGATTGTTGGGTTTGTCCACGCTGCAAAGAGACTCAAGACTGTCTGCAAATGA

Protein sequence

MLEAVESSVNGAFSHLHSSGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEDDDDLEFENLHWNGSDMASDDTLKSHRPRQRAHKLSGSSLKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKTVCK

Homology

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BLAST of MELO3C003880.2.1 vs. NCBI nr
Match: XP_008466608.1 (PREDICTED: uncharacterized protein LOC103503976 [Cucumis melo])

HSP 1 Score: 440.7 bits (1132), Expect = 3.1e-120
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MLEAVESSVNGAFSHLHSSGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60
           MLEAVESSVNGAFSHLHSSGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG
Sbjct: 1   MLEAVESSVNGAFSHLHSSGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60

Query: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEDDDDLEFENLHWNGSDMASDDTLKSHRP 120
           LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEDDDDLEFENLHWNGSDMASDDTLKSHRP
Sbjct: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEDDDDLEFENLHWNGSDMASDDTLKSHRP 120

Query: 121 RQRAHKLSGSSLKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDA 180
           RQRAHKLSGSSLKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDA
Sbjct: 121 RQRAHKLSGSSLKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDA 180

Query: 181 FPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKTVCK 224
           FPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKTVCK
Sbjct: 181 FPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKTVCK 223

[Close]

BLAST of MELO3C003880.2.1 vs. NCBI nr
Match: XP_004147794.1 (PREDICTED: uncharacterized protein LOC101206163 [Cucumis sativus] >KGN59933.1 hypothetical protein Csa_3G855270 [Cucumis sativus])

HSP 1 Score: 432.2 bits (1110), Expect = 1.1e-117
Identity = 221/224 (98.66%), Postives = 221/224 (98.66%), Query Frame = 0


Query: 1   MLEAVESSVNGAFSHLHSSGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60
           MLEAVESSVNGAFSHLHSSGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG
Sbjct: 1   MLEAVESSVNGAFSHLHSSGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60

Query: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEDDDDLEFENLHWNGSDMASDDTLKSHRP 120
           LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEDDDDLEFENLHWNGSDMASDDTLKSHRP
Sbjct: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEDDDDLEFENLHWNGSDMASDDTLKSHRP 120

Query: 121 RQRAHKLSGSSLKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDA 180
           RQR HK SGSSLKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDA
Sbjct: 121 RQRTHKSSGSSLKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDA 180

Query: 181 FPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLK-TVCK 224
           FPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLK TVCK
Sbjct: 181 FPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKTTVCK 224

[Close]

BLAST of MELO3C003880.2.1 vs. NCBI nr
Match: XP_022144972.1 (uncharacterized protein LOC111013658 isoform X2 [Momordica charantia])

HSP 1 Score: 411.8 bits (1057), Expect = 1.5e-111
Identity = 212/223 (95.07%), Postives = 214/223 (95.96%), Query Frame = 0


Query: 1   MLEAVESSVNGAFSHLHSSGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60
           MLEAVESSVNG FS L SSGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG
Sbjct: 1   MLEAVESSVNGGFSQLQSSGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60

Query: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEDDDDLEFENLHWNGSDMASDDTLKSHRP 120
           LGGWHWLVLTNGIEVKLQRNALSVIEAPTG+EDDDDLEFENL WNGSDMASDDTLKSHRP
Sbjct: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGHEDDDDLEFENLQWNGSDMASDDTLKSHRP 120

Query: 121 RQRAHKLSGSSLKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDA 180
           R R HK SGSS KTISRSFSYESQSKGSISTPRGSM VDLGKLEMSALWRYWRHFNLVDA
Sbjct: 121 RHRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSM-VDLGKLEMSALWRYWRHFNLVDA 180

Query: 181 FPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKTVCK 224
           FPNPSKEQLVD+VQRHFMSQQLDELQVIVGFVHAAKRLKTVCK
Sbjct: 181 FPNPSKEQLVDLVQRHFMSQQLDELQVIVGFVHAAKRLKTVCK 222

[Close]

BLAST of MELO3C003880.2.1 vs. NCBI nr
Match: XP_022939982.1 (uncharacterized protein LOC111445752 isoform X2 [Cucurbita moschata] >XP_023523277.1 uncharacterized protein LOC111787523 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 410.6 bits (1054), Expect = 3.4e-111
Identity = 213/223 (95.52%), Postives = 213/223 (95.52%), Query Frame = 0


Query: 1   MLEAVESSVNGAFSHLHSSGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60
           MLEAVESSVNG FS L SSGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG
Sbjct: 1   MLEAVESSVNGGFSQLQSSGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60

Query: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEDDDDLEFENLHWNGSDMASDDTLKSHRP 120
           LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEDDDDLEFENL WNGSDMASDDTLKSHR 
Sbjct: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEDDDDLEFENLQWNGSDMASDDTLKSHRL 120

Query: 121 RQRAHKLSGSSLKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDA 180
           R R HK SGSS KTISRSFSYESQSKGSISTPRGSM VDLGKLEMSALWRYWRHFNLVDA
Sbjct: 121 RYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSM-VDLGKLEMSALWRYWRHFNLVDA 180

Query: 181 FPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKTVCK 224
           FPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKTVCK
Sbjct: 181 FPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKTVCK 222

[Close]

BLAST of MELO3C003880.2.1 vs. NCBI nr
Match: XP_022982127.1 (uncharacterized protein LOC111481057 isoform X1 [Cucurbita maxima])

HSP 1 Score: 409.8 bits (1052), Expect = 5.8e-111
Identity = 212/223 (95.07%), Postives = 213/223 (95.52%), Query Frame = 0


Query: 1   MLEAVESSVNGAFSHLHSSGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60
           MLEAVESSVNG FS L SSGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG
Sbjct: 1   MLEAVESSVNGGFSQLQSSGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60

Query: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEDDDDLEFENLHWNGSDMASDDTLKSHRP 120
           LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEDDDDLEFEN+ WNGSDMASDDTLKSHR 
Sbjct: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEDDDDLEFENMQWNGSDMASDDTLKSHRL 120

Query: 121 RQRAHKLSGSSLKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDA 180
           R R HK SGSS KTISRSFSYESQSKGSISTPRGSM VDLGKLEMSALWRYWRHFNLVDA
Sbjct: 121 RYRTHKSSGSSHKTISRSFSYESQSKGSISTPRGSM-VDLGKLEMSALWRYWRHFNLVDA 180

Query: 181 FPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKTVCK 224
           FPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKTVCK
Sbjct: 181 FPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKTVCK 222

[Close]

BLAST of MELO3C003880.2.1 vs. TAIR10
Match: AT1G19330.3 (unknown protein)

HSP 1 Score: 315.1 bits (806), Expect = 3.5e-86
Identity = 175/233 (75.11%), Postives = 191/233 (81.97%), Query Frame = 0


Query: 1   MLEAVESS--VNGAFSHLHS-SGD-SSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVK 60
           MLEAV+SS  VNG F  + S  GD SSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVK
Sbjct: 1   MLEAVDSSGVVNGGFPQIQSFYGDCSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVK 60

Query: 61  KAVGLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEDDDDLEFENLHWNGSDM-----AS 120
           KAVGLGGWHWLVLTNGIEVKLQRNALSV+E PTGNE+DDDL+FEN   NGSDM     AS
Sbjct: 61  KAVGLGGWHWLVLTNGIEVKLQRNALSVLEPPTGNEEDDDLDFENTQRNGSDMIVSFPAS 120

Query: 121 DDTLKSHRPRQRAHKLSGSSLKTISRSFSYESQSKGSISTPRGSM-KVDLGKLEMSALWR 180
           +DTLK H+ + R  + S SS KT+SRS S +SQSK S  TP  +M KVDL KLEM AL  
Sbjct: 121 EDTLKPHKSKLRGQRSSRSSHKTMSRSLSSDSQSKSSGFTPPENMQKVDLSKLEMPALLN 180

Query: 181 YWRHFNLVDAFPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKTVCK 224
           YWRHFNLVDA PNPSKEQL+D+VQRHFMSQQ+DELQVIVGFV AAKR+K  CK
Sbjct: 181 YWRHFNLVDAIPNPSKEQLIDIVQRHFMSQQMDELQVIVGFVQAAKRMKKACK 233

[Close]

BLAST of MELO3C003880.2.1 vs. TAIR10
Match: AT1G75060.1 (unknown protein)

HSP 1 Score: 290.0 bits (741), Expect = 1.2e-78
Identity = 155/217 (71.43%), Postives = 178/217 (82.03%), Query Frame = 0


Query: 11  GAFSHLHSS-GD-SSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLV 70
           G FS L S  GD SSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLV
Sbjct: 17  GGFSQLQSCFGDCSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLV 76

Query: 71  LTNGIEVKLQRNALSVIEAPTGNEDDDDLEFE-NLHWN-GSDMASDDTLKSHRPRQRAHK 130
           LTNGIEVKLQRNALSV+E PTGNE+D+DLE + +  WN  SDM ++DTLK H+ ++R H+
Sbjct: 77  LTNGIEVKLQRNALSVLEHPTGNEEDNDLEVDHSTQWNHPSDMTTEDTLKPHKSKKRGHR 136

Query: 131 LSGSSLKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDAFPNPSK 190
            S  S K + R  S +S SK S  TPR +MKVDL KL+M+AL RYWRHFNLVDA PNP+K
Sbjct: 137 SSRLSQKALYREVSCDSHSKISSITPRLNMKVDLTKLDMAALLRYWRHFNLVDALPNPTK 196

Query: 191 EQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKTVCK 224
           EQL+D++QRHFMSQQ+DELQVIVGFV AA  +K  C+
Sbjct: 197 EQLIDIIQRHFMSQQMDELQVIVGFVQAATGMKKACQ 233

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BLAST of MELO3C003880.2.1 vs. TrEMBL
Match: tr|A0A1S3CRQ8|A0A1S3CRQ8_CUCME (uncharacterized protein LOC103503976 OS=Cucumis melo OX=3656 GN=LOC103503976 PE=4 SV=1)

HSP 1 Score: 440.7 bits (1132), Expect = 2.0e-120
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MLEAVESSVNGAFSHLHSSGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60
           MLEAVESSVNGAFSHLHSSGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG
Sbjct: 1   MLEAVESSVNGAFSHLHSSGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60

Query: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEDDDDLEFENLHWNGSDMASDDTLKSHRP 120
           LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEDDDDLEFENLHWNGSDMASDDTLKSHRP
Sbjct: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEDDDDLEFENLHWNGSDMASDDTLKSHRP 120

Query: 121 RQRAHKLSGSSLKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDA 180
           RQRAHKLSGSSLKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDA
Sbjct: 121 RQRAHKLSGSSLKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDA 180

Query: 181 FPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKTVCK 224
           FPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKTVCK
Sbjct: 181 FPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKTVCK 223

[Close]

BLAST of MELO3C003880.2.1 vs. TrEMBL
Match: tr|A0A0A0LDS8|A0A0A0LDS8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G855270 PE=4 SV=1)

HSP 1 Score: 432.2 bits (1110), Expect = 7.2e-118
Identity = 221/224 (98.66%), Postives = 221/224 (98.66%), Query Frame = 0


Query: 1   MLEAVESSVNGAFSHLHSSGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60
           MLEAVESSVNGAFSHLHSSGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG
Sbjct: 1   MLEAVESSVNGAFSHLHSSGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60

Query: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEDDDDLEFENLHWNGSDMASDDTLKSHRP 120
           LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEDDDDLEFENLHWNGSDMASDDTLKSHRP
Sbjct: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEDDDDLEFENLHWNGSDMASDDTLKSHRP 120

Query: 121 RQRAHKLSGSSLKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDA 180
           RQR HK SGSSLKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDA
Sbjct: 121 RQRTHKSSGSSLKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDA 180

Query: 181 FPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLK-TVCK 224
           FPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLK TVCK
Sbjct: 181 FPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKTTVCK 224

[Close]

BLAST of MELO3C003880.2.1 vs. TrEMBL
Match: tr|A0A2R6R3J2|A0A2R6R3J2_ACTCH (Histone deacetylase complex subunit like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc11816 PE=4 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 4.8e-106
Identity = 199/223 (89.24%), Postives = 208/223 (93.27%), Query Frame = 0


Query: 1   MLEAVESSVNGAFSHLHSSGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60
           MLEAVESSVNG FS L S GDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG
Sbjct: 1   MLEAVESSVNGGFSQLQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60

Query: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEDDDDLEFENLHWNGSDMASDDTLKSHRP 120
           LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNE+D+DLEFEN+HWNGSD+ASDDT KSHR 
Sbjct: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDNDLEFENVHWNGSDLASDDTQKSHRS 120

Query: 121 RQRAHKLSGSSLKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDA 180
           R R HK SGSS KT+SRS S++SQSKGSISTPRGS K+DL KLEM+ALWRYWRHFNLVDA
Sbjct: 121 RHRIHKSSGSSHKTMSRSLSWDSQSKGSISTPRGSTKIDLSKLEMAALWRYWRHFNLVDA 180

Query: 181 FPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKTVCK 224
            PNPSKEQLVDVVQRHFMSQQLDELQVIVGFV AAKRLKTVCK
Sbjct: 181 IPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVQAAKRLKTVCK 223

[Close]

BLAST of MELO3C003880.2.1 vs. TrEMBL
Match: tr|M5XGR5|M5XGR5_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G383300 PE=4 SV=1)

HSP 1 Score: 389.4 bits (999), Expect = 5.3e-105
Identity = 195/223 (87.44%), Postives = 208/223 (93.27%), Query Frame = 0


Query: 1   MLEAVESSVNGAFSHLHSSGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60
           MLEA+ESSV+G FSHL S GDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG
Sbjct: 1   MLEAMESSVHGGFSHLQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60

Query: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEDDDDLEFENLHWNGSDMASDDTLKSHRP 120
           LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNE+DDDL+FEN+ WNGSDMASDDT KSHR 
Sbjct: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLDFENVQWNGSDMASDDTQKSHRS 120

Query: 121 RQRAHKLSGSSLKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDA 180
           RQR HK SGSS KT+ R+FS +SQSKGSISTPRGS K+DLGKLEM+ALWRYWRHFNLVDA
Sbjct: 121 RQRVHKSSGSSHKTMCRTFSCDSQSKGSISTPRGSTKIDLGKLEMAALWRYWRHFNLVDA 180

Query: 181 FPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKTVCK 224
            PNPSKE+L+DVVQRHFMSQ +DELQVIVGFV AAKRLKTVCK
Sbjct: 181 IPNPSKEELIDVVQRHFMSQPIDELQVIVGFVQAAKRLKTVCK 223

[Close]

BLAST of MELO3C003880.2.1 vs. TrEMBL
Match: tr|A0A151RBL7|A0A151RBL7_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_038783 PE=4 SV=1)

HSP 1 Score: 382.5 bits (981), Expect = 6.5e-103
Identity = 193/223 (86.55%), Postives = 204/223 (91.48%), Query Frame = 0


Query: 1   MLEAVESSVNGAFSHLHSSGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60
           MLEA+ESSVNG FSHL S GDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG
Sbjct: 1   MLEAMESSVNGGFSHLQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVG 60

Query: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEDDDDLEFENLHWNGSDMASDDTLKSHRP 120
           LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNE+DDDLEFEN+ WNGSDMASDDT KSH+ 
Sbjct: 61  LGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENMQWNGSDMASDDTQKSHKS 120

Query: 121 RQRAHKLSGSSLKTISRSFSYESQSKGSISTPRGSMKVDLGKLEMSALWRYWRHFNLVDA 180
           R R H+  GSS KT+SRSFS +SQSKGS+S P GS  VDL KLEM+ALWRYWRHFNLVDA
Sbjct: 121 RHRMHRALGSSHKTMSRSFSGDSQSKGSVSMPHGSTMVDLSKLEMAALWRYWRHFNLVDA 180

Query: 181 FPNPSKEQLVDVVQRHFMSQQLDELQVIVGFVHAAKRLKTVCK 224
            PNPSKEQLVDVVQRHFMSQQ+DELQVI+GFV AAKRLKTVCK
Sbjct: 181 VPNPSKEQLVDVVQRHFMSQQMDELQVIMGFVQAAKRLKTVCK 223

The following BLAST results are available for this feature:

BLAST of MELO3C003880.2.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008466608.1	3.1e-120	100.00	PREDICTED: uncharacterized protein LOC103503976 [Cucumis melo]	[more]
XP_004147794.1	1.1e-117	98.66	PREDICTED: uncharacterized protein LOC101206163 [Cucumis sativus] >KGN59933.1 hy...	[more]
XP_022144972.1	1.5e-111	95.07	uncharacterized protein LOC111013658 isoform X2 [Momordica charantia]	[more]
XP_022939982.1	3.4e-111	95.52	uncharacterized protein LOC111445752 isoform X2 [Cucurbita moschata] >XP_0235232...	[more]
XP_022982127.1	5.8e-111	95.07	uncharacterized protein LOC111481057 isoform X1 [Cucurbita maxima]	[more]

BLAST of MELO3C003880.2.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G19330.3	3.5e-86	75.11	unknown protein	[more]
AT1G75060.1	1.2e-78	71.43	unknown protein	[more]

BLAST of MELO3C003880.2.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C003880.2.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CRQ8\|A0A1S3CRQ8_CUCME	2.0e-120	100.00	uncharacterized protein LOC103503976 OS=Cucumis melo OX=3656 GN=LOC103503976 PE=...	[more]
tr\|A0A0A0LDS8\|A0A0A0LDS8_CUCSA	7.2e-118	98.66	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G855270 PE=4 SV=1	[more]
tr\|A0A2R6R3J2\|A0A2R6R3J2_ACTCH	4.8e-106	89.24	Histone deacetylase complex subunit like OS=Actinidia chinensis var. chinensis O...	[more]
tr\|M5XGR5\|M5XGR5_PRUPE	5.3e-105	87.44	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G383300 PE=4 SV=1	[more]
tr\|A0A151RBL7\|A0A151RBL7_CAJCA	6.5e-103	86.55	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_038783 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR024145	His_deAcase_SAP30/SAP30L
IPR025718	SAP30_Sin3-bd
IPR038291	SAP30_C_sf

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016575	histone deacetylation
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0000118	histone deacetylase complex
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004407	histone deacetylase activity
molecular_function	GO:0003712	transcription cofactor activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C003880.2	MELO3C003880.2	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C003880.2.1	MELO3C003880.2.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C003880.2.1.exon.1	MELO3C003880.2.1.exon.1	exon
MELO3C003880.2.1.exon.2	MELO3C003880.2.1.exon.2	exon
MELO3C003880.2.1.exon.3	MELO3C003880.2.1.exon.3	exon
MELO3C003880.2.1.exon.4	MELO3C003880.2.1.exon.4	exon
MELO3C003880.2.1.exon.5	MELO3C003880.2.1.exon.5	exon
MELO3C003880.2.1.exon.6	MELO3C003880.2.1.exon.6	exon
MELO3C003880.2.1.exon.7	MELO3C003880.2.1.exon.7	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C003880.2.1.five_prime_UTR.1	MELO3C003880.2.1.five_prime_UTR.1	five_prime_UTR
MELO3C003880.2.1.five_prime_UTR.2	MELO3C003880.2.1.five_prime_UTR.2	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C003880.2.1.CDS.1	MELO3C003880.2.1.CDS.1	CDS
MELO3C003880.2.1.CDS.2	MELO3C003880.2.1.CDS.2	CDS
MELO3C003880.2.1.CDS.3	MELO3C003880.2.1.CDS.3	CDS
MELO3C003880.2.1.CDS.4	MELO3C003880.2.1.CDS.4	CDS
MELO3C003880.2.1.CDS.5	MELO3C003880.2.1.CDS.5	CDS
MELO3C003880.2.1.CDS.6	MELO3C003880.2.1.CDS.6	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C003880.2.1.three_prime_UTR.1	MELO3C003880.2.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038291	SAP30, C-terminal domain superfamily	GENE3D	G3DSA:1.10.720.110		coord: 139..223 e-value: 1.8E-16 score: 61.7
IPR025718	Histone deacetylase complex subunit SAP30, Sin3 binding domain	PFAM	PF13867	SAP30_Sin3_bdg	coord: 163..216 e-value: 8.0E-22 score: 77.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	PANTHER	PTHR13286:SF8	SUBFAMILY NOT NAMED	coord: 20..221
IPR024145	Histone deacetylase complex subunit SAP30/SAP30-like	PANTHER	PTHR13286	SAP30	coord: 20..221