MELO3C003271T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C003271T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionTriosephosphate isomerase
Locationchr8 : 31954334 .. 31955224 (+)
Sequence length663
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGAACAACCGTGCACAACAAAGAAGATTAGAAAGCTATTGATCGATCCTCATGCCTTTGCATCAATGTTAGGGAATGAGTCGTGTGAAGGAAACAAGGAAGACGAAGAATCAAAAGAAACTCTAACATTGGTCAAAGAAATGCCTAAAATAGAGACAGATATTGTTGGACACAATCGAAGCAAGTTTTCAAAGATAAATCAGAACAAGACAAAAGAAGGCAAGAAAAATCAGAGAAGGGTCGAGGATAGAGAAAAATATCATAGCAAAGGCATTTGGAGAGAGATCAATTGGAGAGTGATCGAGATCTTATCAAATTTAAATGGCCAAGGAGATGAGCATGTTCGCACAATGAAAAAGGAACACGAGCATGAGTGGAGGAAGAAAGTTGGAAAGACATACCTAATACCAACGGAGATACATAAAAACAAGAGGAAGAGGAAACCAAGAAAACTAGCATGGTCAAAGGTAAACTCTTGAGGATAACGTGGTTGCAATGGCTGCATAGAAATGGTGAACAGATCAACGAAGAGTGACCAAGAAGAAACTAGAGGAAGGTCAACAATGATTGCTTGTGAGACCAGAAGTGAAGACTCGAATGAGGAAAAGGTTCTTGCTAAAGAAGCACAAAATGGTTGGCTGAGATGGAGAAAAATGTTGGCAGATCAATGGTTGGGATGGTAAATACCTTGGTAGATTGAATCATTGTTGACTACGCGGAAAGGAGTTAACGAGAGGTTGATGAGAGTGGAAACGCTGGTTATGGTAGTCGCAGCCGAGTTACAGTGGTCGAAGGTACTAGAAATGGCAGAAGAAGTCGAGCTATGGTTGTCAGAGAAGAAGGCTAGGGGAAAAGGTGAATTGCATGAAAGGATGGGAACACATTAG

mRNA sequence

ATGGTGGAACAACCGTGCACAACAAAGAAGATTAGAAAGCTATTGATCGATCCTCATGCCTTTGCATCAATGTTAGGGAATGAGTCGTGTGAAGGAAACAAGGAAGACGAAGAATCAAAAGAAACTCTAACATTGGTCAAAGAAATGCCTAAAATAGAGACAGATATTGTTGGACACAATCGAAGCAAGTTTTCAAAGATAAATCAGAACAAGACAAAAGAAGGCAAGAAAAATCAGAGAAGGGTCGAGGATAGAGAAAAATATCATAGCAAAGGCATTTGGAGAGAGATCAATTGGAGAGTGATCGAGATCTTATCAAATTTAAATGGCCAAGGAGATGAGCATGTTCGCACAATGAAAAAGGAACACGAGCATGAGTGGAGGAAGAAAGTTGGAAAGACATACCTAATACCAACGGAGATACATAAAAACAAGAGGAAGAGGAAACCAAGAAAACTAGCATGGTCAAAGATTGAATCATTGTTGACTACGCGGAAAGGAGTTAACGAGAGGTTGATGAGAGTGGAAACGCTGGTTATGGTAGTCGCAGCCGAGTTACAGTGGTCGAAGGTACTAGAAATGGCAGAAGAAGTCGAGCTATGGTTGTCAGAGAAGAAGGCTAGGGGAAAAGGTGAATTGCATGAAAGGATGGGAACACATTAG

Coding sequence (CDS)

ATGGTGGAACAACCGTGCACAACAAAGAAGATTAGAAAGCTATTGATCGATCCTCATGCCTTTGCATCAATGTTAGGGAATGAGTCGTGTGAAGGAAACAAGGAAGACGAAGAATCAAAAGAAACTCTAACATTGGTCAAAGAAATGCCTAAAATAGAGACAGATATTGTTGGACACAATCGAAGCAAGTTTTCAAAGATAAATCAGAACAAGACAAAAGAAGGCAAGAAAAATCAGAGAAGGGTCGAGGATAGAGAAAAATATCATAGCAAAGGCATTTGGAGAGAGATCAATTGGAGAGTGATCGAGATCTTATCAAATTTAAATGGCCAAGGAGATGAGCATGTTCGCACAATGAAAAAGGAACACGAGCATGAGTGGAGGAAGAAAGTTGGAAAGACATACCTAATACCAACGGAGATACATAAAAACAAGAGGAAGAGGAAACCAAGAAAACTAGCATGGTCAAAGATTGAATCATTGTTGACTACGCGGAAAGGAGTTAACGAGAGGTTGATGAGAGTGGAAACGCTGGTTATGGTAGTCGCAGCCGAGTTACAGTGGTCGAAGGTACTAGAAATGGCAGAAGAAGTCGAGCTATGGTTGTCAGAGAAGAAGGCTAGGGGAAAAGGTGAATTGCATGAAAGGATGGGAACACATTAG

Protein sequence

MVEQPCTTKKIRKLLIDPHAFASMLGNESCEGNKEDEESKETLTLVKEMPKIETDIVGHNRSKFSKINQNKTKEGKKNQRRVEDREKYHSKGIWREINWRVIEILSNLNGQGDEHVRTMKKEHEHEWRKKVGKTYLIPTEIHKNKRKRKPRKLAWSKIESLLTTRKGVNERLMRVETLVMVVAAELQWSKVLEMAEEVELWLSEKKARGKGELHERMGTH*
Homology
[Close]
BLAST of MELO3C003271T1 vs. TrEMBL
Match: A0A0A0KT09_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G652820 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 6.2e-07
Identity = 40/77 (51.95%), Postives = 46/77 (59.74%), Query Frame = 1 

Query: 1  MVEQPCTTKKIRKLLIDPHAFASMLGNESCEGNKEDEESKETLTLVKEMPKIETDIVGHN 60
          M EQ  TT +IR LLI  HAF S+L +ES E  K+DEE  ET  LVKE+ KIETD     
Sbjct: 1  MEEQHFTTNEIRHLLIGHHAFGSLLVDESSEVKKDDEELGETPMLVKEVWKIETD----- 60

Query: 61 RSKFSKINQNKTKEGKK 78
                  QNKTKE K+
Sbjct: 61 --------QNKTKESKE 64

[Close]
BLAST of MELO3C003271T1 vs. NCBI nr
Match: gi|700197551|gb|KGN52728.1| (hypothetical protein Csa_5G652820 [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 8.8e-07
Identity = 40/77 (51.95%), Postives = 46/77 (59.74%), Query Frame = 1 

Query: 1  MVEQPCTTKKIRKLLIDPHAFASMLGNESCEGNKEDEESKETLTLVKEMPKIETDIVGHN 60
          M EQ  TT +IR LLI  HAF S+L +ES E  K+DEE  ET  LVKE+ KIETD     
Sbjct: 1  MEEQHFTTNEIRHLLIGHHAFGSLLVDESSEVKKDDEELGETPMLVKEVWKIETD----- 60

Query: 61 RSKFSKINQNKTKEGKK 78
                  QNKTKE K+
Sbjct: 61 --------QNKTKESKE 64

The following BLAST results are available for this feature:
BLAST of MELO3C003271T1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KT09_CUCSA6.2e-0751.95Uncharacterized protein OS=Cucumis sativus GN=Csa_5G652820 PE=4 SV=1[more]
BLAST of MELO3C003271T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197551|gb|KGN52728.1|8.8e-0751.95hypothetical protein Csa_5G652820 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C003271MELO3C003271gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C003271T1.cds1MELO3C003271T1.cds1CDS
MELO3C003271T1.cds2MELO3C003271T1.cds2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C003271T1MELO3C003271T1-proteinpolypeptide