MELO3C002907T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C002907T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDNA-directed RNA polymerase subunit gamma
Locationchr9 : 7430958 .. 7431161 (+)
Sequence length204
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACACAACCTCTTCCCAAGCACACTACATTGGGTCTGATTCAGAGCAAGCAAAGAGACCTAAGAAGGACGTTGCAGATTCCATTCTTGACACGGATGAGTGGATGAGTCGAGAAGAGAATATTTACAAAGAGTTGCCTGACTTGGAACCAGGAATGGGGACATGTAGCTTGATGACAACCAGCCTAGGTACAAGCATTTGA

mRNA sequence

ATGCACACAACCTCTTCCCAAGCACACTACATTGGGTCTGATTCAGAGCAAGCAAAGAGACCTAAGAAGGACGTTGCAGATTCCATTCTTGACACGGATGAGTGGATGAGTCGAGAAGAGAATATTTACAAAGAGTTGCCTGACTTGGAACCAGGAATGGGGACATGTAGCTTGATGACAACCAGCCTAGGTACAAGCATTTGA

Coding sequence (CDS)

ATGCACACAACCTCTTCCCAAGCACACTACATTGGGTCTGATTCAGAGCAAGCAAAGAGACCTAAGAAGGACGTTGCAGATTCCATTCTTGACACGGATGAGTGGATGAGTCGAGAAGAGAATATTTACAAAGAGTTGCCTGACTTGGAACCAGGAATGGGGACATGTAGCTTGATGACAACCAGCCTAGGTACAAGCATTTGA

Protein sequence

MHTTSSQAHYIGSDSEQAKRPKKDVADSILDTDEWMSREENIYKELPDLEPGMGTCSLMTTSLGTSI*
Homology
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BLAST of MELO3C002907T1 vs. NCBI nr
Match: gi|659072222|ref|XP_008464070.1| (PREDICTED: stress response protein NST1-like [Cucumis melo])

HSP 1 Score: 68.9 bits (167), Expect = 3.8e-09
Identity = 33/53 (62.26%), Postives = 40/53 (75.47%), Query Frame = 1 

Query: 3   TTSSQAHYIGSDSEQAKRPKKDVADSILDTDEWMSREENIYKELPDLEPGMGT 56
           T+S QAH++  D EQA+RPKKD  D ILD DE M ++ENI K LP+LEPGM T
Sbjct: 63  TSSPQAHFVKPDLEQAQRPKKDATDFILDIDELMGQKENICKGLPNLEPGMET 115

The following BLAST results are available for this feature:
BLAST of MELO3C002907T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659072222|ref|XP_008464070.1|3.8e-0962.26PREDICTED: stress response protein NST1-like [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C002907MELO3C002907gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C002907T1MELO3C002907T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C002907T1.cds1MELO3C002907T1.cds1CDS