MELO3C002907 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C002907
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDNA-directed RNA polymerase subunit gamma
Locationchr9 : 7430958 .. 7431161 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACACAACCTCTTCCCAAGCACACTACATTGGGTCTGATTCAGAGCAAGCAAAGAGACCTAAGAAGGACGTTGCAGATTCCATTCTTGACACGGATGAGTGGATGAGTCGAGAAGAGAATATTTACAAAGAGTTGCCTGACTTGGAACCAGGAATGGGGACATGTAGCTTGATGACAACCAGCCTAGGTACAAGCATTTGA

mRNA sequence

ATGCACACAACCTCTTCCCAAGCACACTACATTGGGTCTGATTCAGAGCAAGCAAAGAGACCTAAGAAGGACGTTGCAGATTCCATTCTTGACACGGATGAGTGGATGAGTCGAGAAGAGAATATTTACAAAGAGTTGCCTGACTTGGAACCAGGAATGGGGACATGTAGCTTGATGACAACCAGCCTAGGTACAAGCATTTGA

Coding sequence (CDS)

ATGCACACAACCTCTTCCCAAGCACACTACATTGGGTCTGATTCAGAGCAAGCAAAGAGACCTAAGAAGGACGTTGCAGATTCCATTCTTGACACGGATGAGTGGATGAGTCGAGAAGAGAATATTTACAAAGAGTTGCCTGACTTGGAACCAGGAATGGGGACATGTAGCTTGATGACAACCAGCCTAGGTACAAGCATTTGA

Protein sequence

MHTTSSQAHYIGSDSEQAKRPKKDVADSILDTDEWMSREENIYKELPDLEPGMGTCSLMTTSLGTSI*
Homology
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BLAST of MELO3C002907 vs. NCBI nr
Match: gi|659072222|ref|XP_008464070.1| (PREDICTED: stress response protein NST1-like [Cucumis melo])

HSP 1 Score: 68.9 bits (167), Expect = 3.8e-09
Identity = 33/53 (62.26%), Postives = 40/53 (75.47%), Query Frame = 1 

Query: 3   TTSSQAHYIGSDSEQAKRPKKDVADSILDTDEWMSREENIYKELPDLEPGMGT 56
           T+S QAH++  D EQA+RPKKD  D ILD DE M ++ENI K LP+LEPGM T
Sbjct: 63  TSSPQAHFVKPDLEQAQRPKKDATDFILDIDELMGQKENICKGLPNLEPGMET 115

The following BLAST results are available for this feature:
BLAST of MELO3C002907 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659072222|ref|XP_008464070.1|3.8e-0962.26PREDICTED: stress response protein NST1-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C002907T1MELO3C002907T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C002907Cucumber (Chinese Long) v3cucmeB359
MELO3C002907Watermelon (97103) v2mewmbB038
MELO3C002907Wax gourdmewgoB030
MELO3C002907Cucumber (Gy14) v1cgymeB460
MELO3C002907Cucurbita maxima (Rimu)cmameB716
MELO3C002907Cucurbita moschata (Rifu)cmomeB135
MELO3C002907Cucurbita moschata (Rifu)cmomeB705
MELO3C002907Wild cucumber (PI 183967)cpimeB350
MELO3C002907Cucumber (Chinese Long) v2cumeB361
MELO3C002907Watermelon (Charleston Gray)mewcgB002
MELO3C002907Watermelon (97103) v1mewmB003
MELO3C002907Cucurbita pepo (Zucchini)cpemeB078
MELO3C002907Cucurbita pepo (Zucchini)cpemeB741
MELO3C002907Bottle gourd (USVL1VR-Ls)lsimeB162
MELO3C002907Cucumber (Gy14) v2cgybmeB300
MELO3C002907Silver-seed gourdcarmeB1030