MELO3C002855T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C002855T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionGlutamate--cysteine ligase
Locationchr12 : 18272407 .. 18273539 (+)
Sequence length708
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAAAGTTTTCATAGTTGACAAACATGGTCGCAAAAGTTGCATACTAGATCATAAAGGACTAGAGAAGAGTGGATTGGTTTCCTTTCTATCCATGATCAATCCAACGGTTGAAATAGAACCAAAGCTGAGGCCTCCAATTGCTGGTCGAAAAGATACCAGGAAGTTTTACTCTTCATCATCAGACTCAGATACATTAAGGAGGTCTTATGCCCAGGTTTATTCTGATGGATACCCAAGTGATTCGTCTTCAGGAAGAGAAAGGAGTCTCTCTACAAGCCCAACTAGACAGGTCATTGAAAATGAAAACATTGTCATCATAACCAGGAGGTTCTTCCATTATGATTGGCAAAAAATAATGACTTCTTTCACTTTCTCTCTTTTCCACTCAGACAAAGTCATTATCACTTTCAAAGATTCATCCTAAGCAAACTTGCTATGCAACAACAATGGTTGGTCAATAATGGGGAATTTCAATGTTAGATTTGAGAAGTGGTCTTTTGAAAAGCATGTTGTTCCTAAAGTGATTCCAAGCTATGGTGGCTGGGTAACTTTTAAGGGCATTCCCTTATCTGCTTGGAAAACTGATACTTTTACTCATTGGAAATGCTTATGGGGTCTTCTTGGATGTGTCTAGGGAAACAAAAAACAGAACAAACTTATGGAAGCAAGAATCAAAGTTAGATATAACTACTCAGATTTTATCCCAGCCAGTGTTTGCATCAAAGATGAAAATGGGAACTCTTTTGTGGTGCAAGTTGTCACTCCTGAAAATGAGAAATTGCTCATTGAAAGTGATATCAAAATCCATGGTTCTATCTAGAGGCAAGTTGCAATGAATTTGATGATTTCAATCCAAAATTAGAGCAGTATCACTTCATCAAAAATTCAGCAGTCCTACTGGAGAAACTCAAGCTAAAAAGCAAGATAGTGATTAATGAGCCCTTTCCATCCAATGAAAATCTCATAGTAGCCAAGAACATTAATGATAAAGAATCTTCAAAATTAGATATAAAGGTTGCCAGCAGGAAAGAGAAAGAAATTGAGAAGGAGAAAGGCTTAGTGAGAAGCATTGATGAAGATTTAGAAAGAGATACTCATTTAATGCTGGCAAATACAAATCTTATATAA

mRNA sequence

ATGGCTAAAGTTTTCATAGTTGACAAACATGGTCGCAAAAGTTGCATACTAGATCATAAAGGACTAGAGAAGAGTGGATTGGTTTCCTTTCTATCCATGATCAATCCAACGGTTGAAATAGAACCAAAGCTGAGGCCTCCAATTGCTGGTCGAAAAGATACCAGGAAGTTTTACTCTTCATCATCAGACTCAGATACATTAAGGAGGTCTTATGCCCAGGTTTATTCTGATGGATACCCAAGTGATTCGTCTTCAGGAAGAGAAAGGAGTCTCTCTACAAGCCCAACTAGACAGGGAAACAAAAAACAGAACAAACTTATGGAAGCAAGAATCAAAGTTAGATATAACTACTCAGATTTTATCCCAGCCAGTGTTTGCATCAAAGATGAAAATGGGAACTCTTTTGTGGTGCAAGTTGTCACTCCTGAAAATGAGAAATTGCTCATTGAAAGTGATATCAAAATCCATGCAGTCCTACTGGAGAAACTCAAGCTAAAAAGCAAGATAGTGATTAATGAGCCCTTTCCATCCAATGAAAATCTCATAGTAGCCAAGAACATTAATGATAAAGAATCTTCAAAATTAGATATAAAGGTTGCCAGCAGGAAAGAGAAAGAAATTGAGAAGGAGAAAGGCTTAGTGAGAAGCATTGATGAAGATTTAGAAAGAGATACTCATTTAATGCTGGCAAATACAAATCTTATATAA

Coding sequence (CDS)

ATGGCTAAAGTTTTCATAGTTGACAAACATGGTCGCAAAAGTTGCATACTAGATCATAAAGGACTAGAGAAGAGTGGATTGGTTTCCTTTCTATCCATGATCAATCCAACGGTTGAAATAGAACCAAAGCTGAGGCCTCCAATTGCTGGTCGAAAAGATACCAGGAAGTTTTACTCTTCATCATCAGACTCAGATACATTAAGGAGGTCTTATGCCCAGGTTTATTCTGATGGATACCCAAGTGATTCGTCTTCAGGAAGAGAAAGGAGTCTCTCTACAAGCCCAACTAGACAGGGAAACAAAAAACAGAACAAACTTATGGAAGCAAGAATCAAAGTTAGATATAACTACTCAGATTTTATCCCAGCCAGTGTTTGCATCAAAGATGAAAATGGGAACTCTTTTGTGGTGCAAGTTGTCACTCCTGAAAATGAGAAATTGCTCATTGAAAGTGATATCAAAATCCATGCAGTCCTACTGGAGAAACTCAAGCTAAAAAGCAAGATAGTGATTAATGAGCCCTTTCCATCCAATGAAAATCTCATAGTAGCCAAGAACATTAATGATAAAGAATCTTCAAAATTAGATATAAAGGTTGCCAGCAGGAAAGAGAAAGAAATTGAGAAGGAGAAAGGCTTAGTGAGAAGCATTGATGAAGATTTAGAAAGAGATACTCATTTAATGCTGGCAAATACAAATCTTATATAA

Protein sequence

MAKVFIVDKHGRKSCILDHKGLEKSGLVSFLSMINPTVEIEPKLRPPIAGRKDTRKFYSSSSDSDTLRRSYAQVYSDGYPSDSSSGRERSLSTSPTRQGNKKQNKLMEARIKVRYNYSDFIPASVCIKDENGNSFVVQVVTPENEKLLIESDIKIHAVLLEKLKLKSKIVINEPFPSNENLIVAKNINDKESSKLDIKVASRKEKEIEKEKGLVRSIDEDLERDTHLMLANTNLI*
Homology
[Close]
BLAST of MELO3C002855T1 vs. NCBI nr
Match: gi|659071590|ref|XP_008460776.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis melo])

HSP 1 Score: 68.9 bits (167), Expect = 1.3e-08
Identity = 48/108 (44.44%), Postives = 58/108 (53.70%), Query Frame = 1 

Query: 2   AKVFIVDKHGRKSCILDHKGLEKSGLVSFLSMINPTVEIEPKLRPPIAGRK--DTRKFYS 61
           A++F VD+  RKSCIL  +G EKSG VSFLSMI P VE++ K RP    R   D+R    
Sbjct: 94  AEIFRVDQKNRKSCILVPEGPEKSGWVSFLSMITPKVEVKAKTRPAFLPRSSPDSR---- 153

Query: 62  SSSDSDTLRRSYAQVY-----------SDGYPSDSSSGRERSLSTSPT 97
            S   D  +RSYA+             SD Y SDSS     SL  SP+
Sbjct: 154 LSPPIDFHKRSYARAVTEGRSSATSDSSDSYSSDSSHSSGNSLCVSPS 197

[Close]
BLAST of MELO3C002855T1 vs. NCBI nr
Match: gi|659071590|ref|XP_008460776.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis melo])

HSP 1 Score: 61.6 bits (148), Expect = 2.1e-06
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 1 

Query: 101 KKQNKLMEARIKVRYNYSDFIPASVCIKDENGNSFVVQVVTPENEKLLIESDIKIH 157
           +    L+EA+IK+RYNYS F+PA+V I D  GN F +QVVT    K LIE ++++H
Sbjct: 324 RSAKNLIEAKIKIRYNYSGFLPANVRIFDNEGNKFSIQVVTHPEGKWLIERNVRLH 379

The following BLAST results are available for this feature:
BLAST of MELO3C002855T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659071590|ref|XP_008460776.1|1.3e-0844.44PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis me... [more]
gi|659071590|ref|XP_008460776.1|2.1e-0650.00PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis me... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C002855MELO3C002855gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C002855T1MELO3C002855T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C002855T1.cds1MELO3C002855T1.cds1CDS
MELO3C002855T1.cds2MELO3C002855T1.cds2CDS
MELO3C002855T1.cds3MELO3C002855T1.cds3CDS