MELO3C002855 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C002855
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionGlutamate--cysteine ligase
Locationchr12 : 18272407 .. 18273539 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAAAGTTTTCATAGTTGACAAACATGGTCGCAAAAGTTGCATACTAGATCATAAAGGACTAGAGAAGAGTGGATTGGTTTCCTTTCTATCCATGATCAATCCAACGGTTGAAATAGAACCAAAGCTGAGGCCTCCAATTGCTGGTCGAAAAGATACCAGGAAGTTTTACTCTTCATCATCAGACTCAGATACATTAAGGAGGTCTTATGCCCAGGTTTATTCTGATGGATACCCAAGTGATTCGTCTTCAGGAAGAGAAAGGAGTCTCTCTACAAGCCCAACTAGACAGGTCATTGAAAATGAAAACATTGTCATCATAACCAGGAGGTTCTTCCATTATGATTGGCAAAAAATAATGACTTCTTTCACTTTCTCTCTTTTCCACTCAGACAAAGTCATTATCACTTTCAAAGATTCATCCTAAGCAAACTTGCTATGCAACAACAATGGTTGGTCAATAATGGGGAATTTCAATGTTAGATTTGAGAAGTGGTCTTTTGAAAAGCATGTTGTTCCTAAAGTGATTCCAAGCTATGGTGGCTGGGTAACTTTTAAGGGCATTCCCTTATCTGCTTGGAAAACTGATACTTTTACTCATTGGAAATGCTTATGGGGTCTTCTTGGATGTGTCTAGGGAAACAAAAAACAGAACAAACTTATGGAAGCAAGAATCAAAGTTAGATATAACTACTCAGATTTTATCCCAGCCAGTGTTTGCATCAAAGATGAAAATGGGAACTCTTTTGTGGTGCAAGTTGTCACTCCTGAAAATGAGAAATTGCTCATTGAAAGTGATATCAAAATCCATGGTTCTATCTAGAGGCAAGTTGCAATGAATTTGATGATTTCAATCCAAAATTAGAGCAGTATCACTTCATCAAAAATTCAGCAGTCCTACTGGAGAAACTCAAGCTAAAAAGCAAGATAGTGATTAATGAGCCCTTTCCATCCAATGAAAATCTCATAGTAGCCAAGAACATTAATGATAAAGAATCTTCAAAATTAGATATAAAGGTTGCCAGCAGGAAAGAGAAAGAAATTGAGAAGGAGAAAGGCTTAGTGAGAAGCATTGATGAAGATTTAGAAAGAGATACTCATTTAATGCTGGCAAATACAAATCTTATATAA

mRNA sequence

ATGGCTAAAGTTTTCATAGTTGACAAACATGGTCGCAAAAGTTGCATACTAGATCATAAAGGACTAGAGAAGAGTGGATTGGTTTCCTTTCTATCCATGATCAATCCAACGGTTGAAATAGAACCAAAGCTGAGGCCTCCAATTGCTGGTCGAAAAGATACCAGGAAGTTTTACTCTTCATCATCAGACTCAGATACATTAAGGAGGTCTTATGCCCAGGTTTATTCTGATGGATACCCAAGTGATTCGTCTTCAGGAAGAGAAAGGAGTCTCTCTACAAGCCCAACTAGACAGGGAAACAAAAAACAGAACAAACTTATGGAAGCAAGAATCAAAGTTAGATATAACTACTCAGATTTTATCCCAGCCAGTGTTTGCATCAAAGATGAAAATGGGAACTCTTTTGTGGTGCAAGTTGTCACTCCTGAAAATGAGAAATTGCTCATTGAAAGTGATATCAAAATCCATGCAGTCCTACTGGAGAAACTCAAGCTAAAAAGCAAGATAGTGATTAATGAGCCCTTTCCATCCAATGAAAATCTCATAGTAGCCAAGAACATTAATGATAAAGAATCTTCAAAATTAGATATAAAGGTTGCCAGCAGGAAAGAGAAAGAAATTGAGAAGGAGAAAGGCTTAGTGAGAAGCATTGATGAAGATTTAGAAAGAGATACTCATTTAATGCTGGCAAATACAAATCTTATATAA

Coding sequence (CDS)

ATGGCTAAAGTTTTCATAGTTGACAAACATGGTCGCAAAAGTTGCATACTAGATCATAAAGGACTAGAGAAGAGTGGATTGGTTTCCTTTCTATCCATGATCAATCCAACGGTTGAAATAGAACCAAAGCTGAGGCCTCCAATTGCTGGTCGAAAAGATACCAGGAAGTTTTACTCTTCATCATCAGACTCAGATACATTAAGGAGGTCTTATGCCCAGGTTTATTCTGATGGATACCCAAGTGATTCGTCTTCAGGAAGAGAAAGGAGTCTCTCTACAAGCCCAACTAGACAGGGAAACAAAAAACAGAACAAACTTATGGAAGCAAGAATCAAAGTTAGATATAACTACTCAGATTTTATCCCAGCCAGTGTTTGCATCAAAGATGAAAATGGGAACTCTTTTGTGGTGCAAGTTGTCACTCCTGAAAATGAGAAATTGCTCATTGAAAGTGATATCAAAATCCATGCAGTCCTACTGGAGAAACTCAAGCTAAAAAGCAAGATAGTGATTAATGAGCCCTTTCCATCCAATGAAAATCTCATAGTAGCCAAGAACATTAATGATAAAGAATCTTCAAAATTAGATATAAAGGTTGCCAGCAGGAAAGAGAAAGAAATTGAGAAGGAGAAAGGCTTAGTGAGAAGCATTGATGAAGATTTAGAAAGAGATACTCATTTAATGCTGGCAAATACAAATCTTATATAA

Protein sequence

MAKVFIVDKHGRKSCILDHKGLEKSGLVSFLSMINPTVEIEPKLRPPIAGRKDTRKFYSSSSDSDTLRRSYAQVYSDGYPSDSSSGRERSLSTSPTRQGNKKQNKLMEARIKVRYNYSDFIPASVCIKDENGNSFVVQVVTPENEKLLIESDIKIHAVLLEKLKLKSKIVINEPFPSNENLIVAKNINDKESSKLDIKVASRKEKEIEKEKGLVRSIDEDLERDTHLMLANTNLI*
Homology
[Close]
BLAST of MELO3C002855 vs. NCBI nr
Match: gi|659071590|ref|XP_008460776.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis melo])

HSP 1 Score: 68.9 bits (167), Expect = 1.3e-08
Identity = 48/108 (44.44%), Postives = 58/108 (53.70%), Query Frame = 1 

Query: 2   AKVFIVDKHGRKSCILDHKGLEKSGLVSFLSMINPTVEIEPKLRPPIAGRK--DTRKFYS 61
           A++F VD+  RKSCIL  +G EKSG VSFLSMI P VE++ K RP    R   D+R    
Sbjct: 94  AEIFRVDQKNRKSCILVPEGPEKSGWVSFLSMITPKVEVKAKTRPAFLPRSSPDSR---- 153

Query: 62  SSSDSDTLRRSYAQVY-----------SDGYPSDSSSGRERSLSTSPT 97
            S   D  +RSYA+             SD Y SDSS     SL  SP+
Sbjct: 154 LSPPIDFHKRSYARAVTEGRSSATSDSSDSYSSDSSHSSGNSLCVSPS 197

[Close]
BLAST of MELO3C002855 vs. NCBI nr
Match: gi|659071590|ref|XP_008460776.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis melo])

HSP 1 Score: 61.6 bits (148), Expect = 2.1e-06
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 1 

Query: 101 KKQNKLMEARIKVRYNYSDFIPASVCIKDENGNSFVVQVVTPENEKLLIESDIKIH 157
           +    L+EA+IK+RYNYS F+PA+V I D  GN F +QVVT    K LIE ++++H
Sbjct: 324 RSAKNLIEAKIKIRYNYSGFLPANVRIFDNEGNKFSIQVVTHPEGKWLIERNVRLH 379

The following BLAST results are available for this feature:
BLAST of MELO3C002855 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659071590|ref|XP_008460776.1|1.3e-0844.44PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis me... [more]
gi|659071590|ref|XP_008460776.1|2.1e-0650.00PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis me... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C002855T1MELO3C002855T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C002855Cucurbita pepo (Zucchini)cpemeB477
MELO3C002855Bottle gourd (USVL1VR-Ls)lsimeB179
MELO3C002855Cucumber (Gy14) v2cgybmeB027
MELO3C002855Silver-seed gourdcarmeB0400
MELO3C002855Silver-seed gourdcarmeB0430
MELO3C002855Cucumber (Chinese Long) v3cucmeB013
MELO3C002855Watermelon (97103) v2mewmbB157
MELO3C002855Wax gourdmewgoB164
MELO3C002855Cucurbita maxima (Rimu)cmameB192
MELO3C002855Cucurbita maxima (Rimu)cmameB364
MELO3C002855Cucurbita moschata (Rifu)cmomeB179
MELO3C002855Cucurbita moschata (Rifu)cmomeB356
MELO3C002855Wild cucumber (PI 183967)cpimeB028
MELO3C002855Cucumber (Chinese Long) v2cumeB031
MELO3C002855Watermelon (Charleston Gray)mewcgB153
MELO3C002855Watermelon (97103) v1mewmB150