Lsi10G016050.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi10G016050.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr10 : 20538084 .. 20538497 (-)
Sequence length	414

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTGCACATAAACGCTCTTGGTCAGACAGTGTTCACGGAGAAGACCCCAGAGACCAACAATTCAGCCATCAAGATGCCAAGCAATCTCGAACAGAACGCGAGCCGAAGACTGAAATAGAAGAAGAAGAAGAAGAGGAGGAGGAGCAACGGGAACAGCTGAAGGAAGGAGAACGAGAAGATGAAGGGCGCGAAGAAGACGAAGGAGAGGAAGAAAAGCAACACAATAAATTGGAAGAAGCGACCGGAGCGAGAGGTTACGTTACGTGTATTCCTTTTCCTTTCTTCTTGGATTTCTTCTGCTTGGTTGTTCTGGTTCCAATTCTACGCTTCTGGTTATGGTTCTTGCTTGGTTTACCGTTTGCTGAAGCTGTTCCATGTGTTTTCAGATTCCGAAGGAAGCCAATCCTCTAG

mRNA sequence

ATGCCTGCACATAAACGCTCTTGGTCAGACAGTGTTCACGGAGAAGACCCCAGAGACCAACAATTCAGCCATCAAGATGCCAAGCAATCTCGAACAGAACGCGAGCCGAAGACTGAAATAGAAGAAGAAGAAGAAGAGGAGGAGGAGCAACGGGAACAGCTGAAGGAAGGAGAACGAGAAGATGAAGGGCGCGAAGAAGACGAAGGAGAGGAAGAAAAGCAACACAATAAATTGGAAGAAGCGACCGGAGCGAGAGGTTACGTTACGTGTATTCCTTTTCCTTTCTTCTTGGATTTCTTCTGCTTGGTTGTTCTGGTTCCAATTCTACGCTTCTGGTTATGGTTCTTGCTTGGTTTACCGTTTGCTGAAGCTGTTCCATGTGTTTTCAGATTCCGAAGGAAGCCAATCCTCTAG

Coding sequence (CDS)

ATGCCTGCACATAAACGCTCTTGGTCAGACAGTGTTCACGGAGAAGACCCCAGAGACCAACAATTCAGCCATCAAGATGCCAAGCAATCTCGAACAGAACGCGAGCCGAAGACTGAAATAGAAGAAGAAGAAGAAGAGGAGGAGGAGCAACGGGAACAGCTGAAGGAAGGAGAACGAGAAGATGAAGGGCGCGAAGAAGACGAAGGAGAGGAAGAAAAGCAACACAATAAATTGGAAGAAGCGACCGGAGCGAGAGGTTACGTTACGTGTATTCCTTTTCCTTTCTTCTTGGATTTCTTCTGCTTGGTTGTTCTGGTTCCAATTCTACGCTTCTGGTTATGGTTCTTGCTTGGTTTACCGTTTGCTGAAGCTGTTCCATGTGTTTTCAGATTCCGAAGGAAGCCAATCCTCTAG

Protein sequence

MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTEREPKTEIEEEEEEEEEQREQLKEGEREDEGREEDEGEEEKQHNKLEEATGARGYVTCIPFPFFLDFFCLVVLVPILRFWLWFLLGLPFAEAVPCVFRFRRKPIL

Homology

[Close]

BLAST of Lsi10G016050.1 vs. TrEMBL
Match: A0A0A0KB89_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G155540 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 7.9e-21
Identity = 67/85 (78.82%), Postives = 73/85 (85.88%), Query Frame = 1


Query: 1  MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTEREPKTEIEEEEEEEEEQREQLKEGERE 60
          MPAHKRSWSD+VHGEDPRDQQFSHQDAKQSRTERE KT+IEEEEEEEE++ EQLKEG+R 
Sbjct: 1  MPAHKRSWSDTVHGEDPRDQQFSHQDAKQSRTERETKTDIEEEEEEEEQREEQLKEGQR- 60

Query: 61 DEGREEDEGEEEKQHNKLEEATGAR 86
                DEGEEEKQ  +LEEATG R
Sbjct: 61 -----VDEGEEEKQRQQLEEATGDR 79

[Close]

BLAST of Lsi10G016050.1 vs. NCBI nr
Match: gi|659094819|ref|XP_008448258.1| (PREDICTED: putative E3 ubiquitin-protein ligase RING1b isoform X2 [Cucumis melo])

HSP 1 Score: 122.9 bits (307), Expect = 4.5e-25
Identity = 74/85 (87.06%), Postives = 78/85 (91.76%), Query Frame = 1


Query: 1  MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTEREPKTEIEEEEEEEEEQREQLKEGERE 60
          MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTERE  TEIEEEEEEEE++ EQLKEG+R 
Sbjct: 1  MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTERETNTEIEEEEEEEEQREEQLKEGQRG 60

Query: 61 DEGREEDEGEEEKQHNKLEEATGAR 86
          DEGREEDEGEEEKQ  +LEEATG R
Sbjct: 61 DEGREEDEGEEEKQRQQLEEATGDR 85

[Close]

BLAST of Lsi10G016050.1 vs. NCBI nr
Match: gi|659094823|ref|XP_008448260.1| (PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X4 [Cucumis melo])

HSP 1 Score: 122.9 bits (307), Expect = 4.5e-25
Identity = 74/85 (87.06%), Postives = 78/85 (91.76%), Query Frame = 1


Query: 1  MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTEREPKTEIEEEEEEEEEQREQLKEGERE 60
          MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTERE  TEIEEEEEEEE++ EQLKEG+R 
Sbjct: 1  MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTERETNTEIEEEEEEEEQREEQLKEGQRG 60

Query: 61 DEGREEDEGEEEKQHNKLEEATGAR 86
          DEGREEDEGEEEKQ  +LEEATG R
Sbjct: 61 DEGREEDEGEEEKQRQQLEEATGDR 85

[Close]

BLAST of Lsi10G016050.1 vs. NCBI nr
Match: gi|659094817|ref|XP_008448257.1| (PREDICTED: putative E3 ubiquitin-protein ligase RING1b isoform X1 [Cucumis melo])

HSP 1 Score: 122.9 bits (307), Expect = 4.5e-25
Identity = 74/85 (87.06%), Postives = 78/85 (91.76%), Query Frame = 1


Query: 1  MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTEREPKTEIEEEEEEEEEQREQLKEGERE 60
          MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTERE  TEIEEEEEEEE++ EQLKEG+R 
Sbjct: 1  MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTERETNTEIEEEEEEEEQREEQLKEGQRG 60

Query: 61 DEGREEDEGEEEKQHNKLEEATGAR 86
          DEGREEDEGEEEKQ  +LEEATG R
Sbjct: 61 DEGREEDEGEEEKQRQQLEEATGDR 85

[Close]

BLAST of Lsi10G016050.1 vs. NCBI nr
Match: gi|449463098|ref|XP_004149271.1| (PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X4 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-20
Identity = 67/85 (78.82%), Postives = 73/85 (85.88%), Query Frame = 1


Query: 1  MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTEREPKTEIEEEEEEEEEQREQLKEGERE 60
          MPAHKRSWSD+VHGEDPRDQQFSHQDAKQSRTERE KT+IEEEEEEEE++ EQLKEG+R 
Sbjct: 1  MPAHKRSWSDTVHGEDPRDQQFSHQDAKQSRTERETKTDIEEEEEEEEQREEQLKEGQR- 60

Query: 61 DEGREEDEGEEEKQHNKLEEATGAR 86
                DEGEEEKQ  +LEEATG R
Sbjct: 61 -----VDEGEEEKQRQQLEEATGDR 79

[Close]

BLAST of Lsi10G016050.1 vs. NCBI nr
Match: gi|778713644|ref|XP_011657078.1| (PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X2 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-20
Identity = 67/85 (78.82%), Postives = 73/85 (85.88%), Query Frame = 1


Query: 1  MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTEREPKTEIEEEEEEEEEQREQLKEGERE 60
          MPAHKRSWSD+VHGEDPRDQQFSHQDAKQSRTERE KT+IEEEEEEEE++ EQLKEG+R 
Sbjct: 1  MPAHKRSWSDTVHGEDPRDQQFSHQDAKQSRTERETKTDIEEEEEEEEQREEQLKEGQR- 60

Query: 61 DEGREEDEGEEEKQHNKLEEATGAR 86
                DEGEEEKQ  +LEEATG R
Sbjct: 61 -----VDEGEEEKQRQQLEEATGDR 79

The following BLAST results are available for this feature:

BLAST of Lsi10G016050.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi10G016050.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KB89_CUCSA	7.9e-21	78.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G155540 PE=4 SV=1	[more]

BLAST of Lsi10G016050.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi10G016050.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659094819\|ref\|XP_008448258.1\|	4.5e-25	87.06	PREDICTED: putative E3 ubiquitin-protein ligase RING1b isoform X2 [Cucumis melo]	[more]
gi\|659094823\|ref\|XP_008448260.1\|	4.5e-25	87.06	PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X4 [Cucumis melo]	[more]
gi\|659094817\|ref\|XP_008448257.1\|	4.5e-25	87.06	PREDICTED: putative E3 ubiquitin-protein ligase RING1b isoform X1 [Cucumis melo]	[more]
gi\|449463098\|ref\|XP_004149271.1\|	1.1e-20	78.82	PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X4 [Cucumis sativ...	[more]
gi\|778713644\|ref\|XP_011657078.1\|	1.1e-20	78.82	PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X2 [Cucumis sativ...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi10G016050	Lsi10G016050	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi10G016050.1.CDS.1	Lsi10G016050.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi10G016050.1	Lsi10G016050.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 37..60 scor