Lsi10G016050 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi10G016050
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr10 : 20538084 .. 20538497 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTGCACATAAACGCTCTTGGTCAGACAGTGTTCACGGAGAAGACCCCAGAGACCAACAATTCAGCCATCAAGATGCCAAGCAATCTCGAACAGAACGCGAGCCGAAGACTGAAATAGAAGAAGAAGAAGAAGAGGAGGAGGAGCAACGGGAACAGCTGAAGGAAGGAGAACGAGAAGATGAAGGGCGCGAAGAAGACGAAGGAGAGGAAGAAAAGCAACACAATAAATTGGAAGAAGCGACCGGAGCGAGAGGTTACGTTACGTGTATTCCTTTTCCTTTCTTCTTGGATTTCTTCTGCTTGGTTGTTCTGGTTCCAATTCTACGCTTCTGGTTATGGTTCTTGCTTGGTTTACCGTTTGCTGAAGCTGTTCCATGTGTTTTCAGATTCCGAAGGAAGCCAATCCTCTAG

mRNA sequence

ATGCCTGCACATAAACGCTCTTGGTCAGACAGTGTTCACGGAGAAGACCCCAGAGACCAACAATTCAGCCATCAAGATGCCAAGCAATCTCGAACAGAACGCGAGCCGAAGACTGAAATAGAAGAAGAAGAAGAAGAGGAGGAGGAGCAACGGGAACAGCTGAAGGAAGGAGAACGAGAAGATGAAGGGCGCGAAGAAGACGAAGGAGAGGAAGAAAAGCAACACAATAAATTGGAAGAAGCGACCGGAGCGAGAGGTTACGTTACGTGTATTCCTTTTCCTTTCTTCTTGGATTTCTTCTGCTTGGTTGTTCTGGTTCCAATTCTACGCTTCTGGTTATGGTTCTTGCTTGGTTTACCGTTTGCTGAAGCTGTTCCATGTGTTTTCAGATTCCGAAGGAAGCCAATCCTCTAG

Coding sequence (CDS)

ATGCCTGCACATAAACGCTCTTGGTCAGACAGTGTTCACGGAGAAGACCCCAGAGACCAACAATTCAGCCATCAAGATGCCAAGCAATCTCGAACAGAACGCGAGCCGAAGACTGAAATAGAAGAAGAAGAAGAAGAGGAGGAGGAGCAACGGGAACAGCTGAAGGAAGGAGAACGAGAAGATGAAGGGCGCGAAGAAGACGAAGGAGAGGAAGAAAAGCAACACAATAAATTGGAAGAAGCGACCGGAGCGAGAGGTTACGTTACGTGTATTCCTTTTCCTTTCTTCTTGGATTTCTTCTGCTTGGTTGTTCTGGTTCCAATTCTACGCTTCTGGTTATGGTTCTTGCTTGGTTTACCGTTTGCTGAAGCTGTTCCATGTGTTTTCAGATTCCGAAGGAAGCCAATCCTCTAG

Protein sequence

MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTEREPKTEIEEEEEEEEEQREQLKEGEREDEGREEDEGEEEKQHNKLEEATGARGYVTCIPFPFFLDFFCLVVLVPILRFWLWFLLGLPFAEAVPCVFRFRRKPIL

Homology

[Close]

BLAST of Lsi10G016050 vs. TrEMBL
Match: A0A0A0KB89_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G155540 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 7.9e-21
Identity = 67/85 (78.82%), Postives = 73/85 (85.88%), Query Frame = 1


Query: 1  MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTEREPKTEIEEEEEEEEEQREQLKEGERE 60
          MPAHKRSWSD+VHGEDPRDQQFSHQDAKQSRTERE KT+IEEEEEEEE++ EQLKEG+R 
Sbjct: 1  MPAHKRSWSDTVHGEDPRDQQFSHQDAKQSRTERETKTDIEEEEEEEEQREEQLKEGQR- 60

Query: 61 DEGREEDEGEEEKQHNKLEEATGAR 86
                DEGEEEKQ  +LEEATG R
Sbjct: 61 -----VDEGEEEKQRQQLEEATGDR 79

[Close]

BLAST of Lsi10G016050 vs. NCBI nr
Match: gi|659094819|ref|XP_008448258.1| (PREDICTED: putative E3 ubiquitin-protein ligase RING1b isoform X2 [Cucumis melo])

HSP 1 Score: 122.9 bits (307), Expect = 4.5e-25
Identity = 74/85 (87.06%), Postives = 78/85 (91.76%), Query Frame = 1


Query: 1  MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTEREPKTEIEEEEEEEEEQREQLKEGERE 60
          MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTERE  TEIEEEEEEEE++ EQLKEG+R 
Sbjct: 1  MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTERETNTEIEEEEEEEEQREEQLKEGQRG 60

Query: 61 DEGREEDEGEEEKQHNKLEEATGAR 86
          DEGREEDEGEEEKQ  +LEEATG R
Sbjct: 61 DEGREEDEGEEEKQRQQLEEATGDR 85

[Close]

BLAST of Lsi10G016050 vs. NCBI nr
Match: gi|659094823|ref|XP_008448260.1| (PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X4 [Cucumis melo])

HSP 1 Score: 122.9 bits (307), Expect = 4.5e-25
Identity = 74/85 (87.06%), Postives = 78/85 (91.76%), Query Frame = 1


Query: 1  MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTEREPKTEIEEEEEEEEEQREQLKEGERE 60
          MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTERE  TEIEEEEEEEE++ EQLKEG+R 
Sbjct: 1  MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTERETNTEIEEEEEEEEQREEQLKEGQRG 60

Query: 61 DEGREEDEGEEEKQHNKLEEATGAR 86
          DEGREEDEGEEEKQ  +LEEATG R
Sbjct: 61 DEGREEDEGEEEKQRQQLEEATGDR 85

[Close]

BLAST of Lsi10G016050 vs. NCBI nr
Match: gi|659094817|ref|XP_008448257.1| (PREDICTED: putative E3 ubiquitin-protein ligase RING1b isoform X1 [Cucumis melo])

HSP 1 Score: 122.9 bits (307), Expect = 4.5e-25
Identity = 74/85 (87.06%), Postives = 78/85 (91.76%), Query Frame = 1


Query: 1  MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTEREPKTEIEEEEEEEEEQREQLKEGERE 60
          MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTERE  TEIEEEEEEEE++ EQLKEG+R 
Sbjct: 1  MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTERETNTEIEEEEEEEEQREEQLKEGQRG 60

Query: 61 DEGREEDEGEEEKQHNKLEEATGAR 86
          DEGREEDEGEEEKQ  +LEEATG R
Sbjct: 61 DEGREEDEGEEEKQRQQLEEATGDR 85

[Close]

BLAST of Lsi10G016050 vs. NCBI nr
Match: gi|449463098|ref|XP_004149271.1| (PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X4 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-20
Identity = 67/85 (78.82%), Postives = 73/85 (85.88%), Query Frame = 1


Query: 1  MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTEREPKTEIEEEEEEEEEQREQLKEGERE 60
          MPAHKRSWSD+VHGEDPRDQQFSHQDAKQSRTERE KT+IEEEEEEEE++ EQLKEG+R 
Sbjct: 1  MPAHKRSWSDTVHGEDPRDQQFSHQDAKQSRTERETKTDIEEEEEEEEQREEQLKEGQR- 60

Query: 61 DEGREEDEGEEEKQHNKLEEATGAR 86
                DEGEEEKQ  +LEEATG R
Sbjct: 61 -----VDEGEEEKQRQQLEEATGDR 79

[Close]

BLAST of Lsi10G016050 vs. NCBI nr
Match: gi|778713644|ref|XP_011657078.1| (PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X2 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-20
Identity = 67/85 (78.82%), Postives = 73/85 (85.88%), Query Frame = 1


Query: 1  MPAHKRSWSDSVHGEDPRDQQFSHQDAKQSRTEREPKTEIEEEEEEEEEQREQLKEGERE 60
          MPAHKRSWSD+VHGEDPRDQQFSHQDAKQSRTERE KT+IEEEEEEEE++ EQLKEG+R 
Sbjct: 1  MPAHKRSWSDTVHGEDPRDQQFSHQDAKQSRTERETKTDIEEEEEEEEQREEQLKEGQR- 60

Query: 61 DEGREEDEGEEEKQHNKLEEATGAR 86
                DEGEEEKQ  +LEEATG R
Sbjct: 61 -----VDEGEEEKQRQQLEEATGDR 79

The following BLAST results are available for this feature:

BLAST of Lsi10G016050 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi10G016050 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KB89_CUCSA	7.9e-21	78.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G155540 PE=4 SV=1	[more]

BLAST of Lsi10G016050 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi10G016050 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659094819\|ref\|XP_008448258.1\|	4.5e-25	87.06	PREDICTED: putative E3 ubiquitin-protein ligase RING1b isoform X2 [Cucumis melo]	[more]
gi\|659094823\|ref\|XP_008448260.1\|	4.5e-25	87.06	PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X4 [Cucumis melo]	[more]
gi\|659094817\|ref\|XP_008448257.1\|	4.5e-25	87.06	PREDICTED: putative E3 ubiquitin-protein ligase RING1b isoform X1 [Cucumis melo]	[more]
gi\|449463098\|ref\|XP_004149271.1\|	1.1e-20	78.82	PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X4 [Cucumis sativ...	[more]
gi\|778713644\|ref\|XP_011657078.1\|	1.1e-20	78.82	PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X2 [Cucumis sativ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G016050.1	Lsi10G016050.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 37..60 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi10G016050	Melon (DHL92) v3.6.1	lsimedB051
Lsi10G016050	Silver-seed gourd	carlsiB027
Lsi10G016050	Silver-seed gourd	carlsiB377
Lsi10G016050	Cucumber (Chinese Long) v3	cuclsiB442
Lsi10G016050	Watermelon (97103) v2	lsiwmbB052
Lsi10G016050	Wax gourd	lsiwgoB068
Lsi10G016050	Cucumber (Gy14) v1	cgylsiB625
Lsi10G016050	Cucurbita maxima (Rimu)	cmalsiB506
Lsi10G016050	Cucurbita maxima (Rimu)	cmalsiB541
Lsi10G016050	Cucurbita moschata (Rifu)	cmolsiB490
Lsi10G016050	Cucurbita moschata (Rifu)	cmolsiB526
Lsi10G016050	Cucurbita pepo (Zucchini)	cpelsiB219
Lsi10G016050	Cucurbita pepo (Zucchini)	cpelsiB599
Lsi10G016050	Wild cucumber (PI 183967)	cpilsiB419
Lsi10G016050	Cucumber (Chinese Long) v2	culsiB416
Lsi10G016050	Melon (DHL92) v3.5.1	lsimeB049
Lsi10G016050	Watermelon (Charleston Gray)	lsiwcgB054
Lsi10G016050	Watermelon (97103) v1	lsiwmB078
Lsi10G016050	Cucumber (Gy14) v2	cgyblsiB381