Lsi10G009190.1 (mRNA) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi10G009190.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionLysine--tRNA ligase
Locationchr10 : 13665338 .. 13671226 (-)
Sequence length180
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTATTCGTGGGACCGGACTCATACTGCTAATCAGCTGCAAGAGTTGTATAAGCATCTAGGTAATGGCGAAGAGTCTAATAGCGACGCGGACTGTGTGTCAATAGCTGGAAGAATTGTGGCTCGCCGAGCGTTTGGAAAGCTTGCATTTCTGACGTTAAGAGATGATTCTGGCACAATTCAGGTTCGTACATTCGCTTGCTTCGATGGACAAAAGCACGCACATATGCTTGCTATTACCTCGTGCTAGGATCAGTGAAGCTCTATGGCGTGCGTATAATTTATTACGCGTTCTATGTAGCAGAGTACACCTTTTTAAGAAGGGGAAAATTTTTGTTTTTGATGTTGGATGGCGGTGCGTATAATTGGGAGATCATTTGACGTTAGGTCTGTTTTATTTGGTTCTCTTGTAGCATCCATGGGAATGAGGCCTTTATAGTTACTTTTAAGTTATATCCTTTATGATCTATTGTACAAGTGCTGTTTTGAAGAGTTTTCTACTCTGCTCTTTATGCTCTTGGTTTGTAAGAGCATTGAGCTTCTCATGAGAGTGTTTTAAAAAGCCCTCTCAGCACACACGCAGGCTCAAGGTGTTGGTCTGGAGCCTCACCTTGGCTCACAAAATAAGGCGCTCCTTTTGTGAAACCCAAGACTTTAAACCCAGGGCCTTGAGGCCTTTTTATTATTTTAAAAATATAGTAATAATTATGATTTTTTCTTCTTTATTAAATAAAAAAAATCAAATTGACTAAGTCTAAATGCAAAATTTCTTGTATTTAGGAGGTTTTTTTTCCCTTCATTTTTACACTTCAACTATGCTTTCTCTTTTGTTGTACTTTTATATATAGTGCACCTCACAAAAAAAAAAAAAAACATTGCGCCTTGTACTTTATTGTGCCTTGAGCTTTAAAAAACACTGATTAACATGATTAAATGGTTAAACTTTTGGTTTCAGCTTTACTGTGAGAAGGAAAGGCTCGTAAATGATCAGTTTGATCAGCTAAAGAATCTTGTTGATATTGGAGATATTCTTGGTGCTCGAGGTTCAATTAAGCGAACTGAGAAAGGTGAGCCCTCACGCTGTTGTTTCGAAATGGTTAGAACACACTCTAGTTTCTTTTAGGAGGTTAGGTCACATTTTACTATTGGCGAGGAAAGGATTCTGCGGTTAACTTCTAGAAGCTAGAGTCTTAAAAGTGAAATACTCATTGGATGCAGCTATTAGAAACAAGAACTGATTTCTCATAATCTAATTGAAATTAGGACTTAGGAGAGAACCTCAAATATTAATCTTATTCTTATCTTAATCTGCCTGTTGCATAGGAAATTGTCAACTAAAATCGACTCTTTTCATTGAATAAAAGCTATATGTTTCTTCAAAGCTTTGCACATTTCTTTCTACATTTTAAATTTAAGACTGGAGAGCATATGTCCATGTGGATCTAAACTGCATTTGCGCCTTATTAGGCATTTGGATTTGTAGTGATTTCATTTTATTTTTTGTCCATTTTCTTCAGGGGAGCTTTCTGTTTGTGTGAATTCTTTTGAAATCCTGACAAAGTCATTACTTCCACTTCCTGACAAATATCATGGTTTAACTGATGTTGATAAGCGCTACCGCCAAAGGTAATTTTTGGTCCTTTTGTTTTCTTTTATATTTGAAAAAATTCTTTTTTTTTTTTTTTTAGGCAAACACTTGTCTATATATGTCTTTCACTATTAGAGTTGTGAAAATCATTTTTTTTTTTGTATTGTTTTTGAAACGGAAATAAAACTTTTTATTGATGAAATGAAAAGAGGCTAATGCTCAAAATACAATGAGACATGAAAAACAAGATAATGCAAATACAACCAAATATAGCCCAACACCGGACTTGCCTAGAAGAATAAAGCAAATACAATCAAATACAACCCATAATGGAATAAATTGGCTCTTTAAATGAAAACTCCAAACACCACTGAAACTGAAACTTTGAGAACAAGCAACCATATGACGAGGACAACTATTATGAGAGAAAGCCAGCTTCAACTTCGACAAAACTGATAATAACCAACAATCCATAAAACCAGAATCGAAGAGGGGAACAAACCGACTAGATTAATTGAGAATCACAACACCTTAGAACCAGAAGAATCCAAATATATAGCCAAAAATTTGGAGAGGGTACAAACAATGCCAGAAAAATCTATCCTTCAATTAAGACAACTTGACCCAGAAAAATCTATCCTTAATTAAGACAACTTTTGCCACCCTGAAATTTGAGACCTCCAAAAACCAGCTTCTTGAATCTGAATTATCGAAGAAACACGCACAACAAGGAAATCTTTCTCATTATTTCTTCCTTTTTTCCCCAAACTCAGCAAACCAAGACTTCTAAGCTTCTTTAATAATTCTGATTTTTTTTTTGGGTCTTATTTGGAAATTGTTAGGTACTAGATATTTAGTTAGTGTAAGTTAAGGAGTATAAGGGTAGTTAGATAGATAGGAAGTTACTAGTAGTTATTGTATAAGGGTGGTTACTACTTGTTATAAATAGAGGGAGGTTATTATGAGAAGGGGAGGTTATTCTATGGAGTGATCTAGGGCTTGGGTGAGGACACTCAAGAGGGAGGTTCCAAGTGCCTTGTACTTGGGTTTATCTTGTATTTTCTTTATAGTTATATCTCAATATATTCAGATATTGTTCTTGTTAGGAAGTATCCTAACAGAAACATACACTTTTCATTAATATAATGAACTAGTAGAAATAACCCCAAAGGGGAAACGTAGAAATAATGATAAAATATAACATCAAAACCAAAACCATCTAAACATAAGGAATTATATAGAAAACATAAAAGCATTCCAATTGAGACAAATATCCTGAATAGAGTAGTCTGCAACTATAAAGCACCGACACTCTTTTAAATGGCCAAGTGTCGGTGTCAGACACGACAGTTGGCGTGACAATTATTTTATTATTAAATTATTTGTTTTCGACACGCCCAAACACAGAAGGGGACACGTCCTGGACATCGTAAGCTGCAAATTAAAAAAAAAACATTTAAAATCAGACATTTTAAAAGCCCACTTTGGCCGTTGTTGCTGAAGGCTCTCCCATGCCGACCACCGATTTTTCCTCCTTCCTCAAATGTAGCGATTTGAAGACCAACCCACCTGCCAGCGACTGAAGAGTCGATGACCACCAACCCTCCACGTCGGTGACTTTGGTTTTTTTTTTTTTGAAACAGAAACAAAACTCTTCTTGATGAAATAAAAAGTGTATAATGCTCGAATTACAATGATACATAAGATCAACTTTGGTTTCTCTCTCCCATCTCTTTTTCTTTTCTTTTATTTTTATGAACATCTTATAACATCACATTTCTGTTTTTAATTTTTTTATGGACTCCACGCCGGTGACTTTGATTTTTATGAACATTCCATTTCTGTTTTTTTCTTCCATTTTAATTTTTTTGTCTCATAGTAGTTACTTTTTTGTTTCCTTTAGTTTTGTTGTGTTAAACTAATTAGTAACTTATCAGAACTTCAATATTGTTATGACTTATGACGTTGGATCGTTGGTCATCTTATCTATTGCATTTTTCATAAATTGTATGGTTGTTATTTTGATGTTTAAAGGTAATGTTTCACAATATTTTATATGCACACCGTATATTTATTATTATTATTTTTTTAAAAAATAATAACGTGTCTCCAACGTGTCATGTCCTACTTTTTTGGAAATTGGCGTGTCGTATTCGTGTTGCATGTCAGTGTCTGTGCTTCTTAGGTCTGCGAAACCTTTTGAGAGAGAACACCATGAAAAGGCCTTTAAGCGAGCCCTAAGCCAAAACAATCATCTCAAGGAAGATATTCATCATGAAAAACCCTCTAATTGAGCTCAAACCATAAATCGAATCATAAATGAAAACTTCAATGGAGCGAAAGGAAACAACATTTTTCATTGATATAAATGAAAAGAGCAAAAGCTTAAAATACAATGTGACTTGATACGAAGGTATAAGAGAAATAAACGTCTAAACAAAAATGATAAATGCATTCCAATTCAGGCATATATCTTGTATGGAAAAATTAGCAAATAGTTTAGAAAGAGAACACCAAGTTGAGGCATTGGTCCTTGCAACTTCAAACCGATCGCTCCATTGTAGAGATTTGTCATTAAAAATCCTCTGATTTCTCTCCAAGAACGAAAATATCGTTATCGGTGTAAATATCAGTGACTCAAATTTACGGATATATCGACAGATATTCCGGAAAAAATTATGGATATCACGGAAATTTATAAAAATATTATGAATTTTTTAGGAAAATTTTAGAACAAACTTATTTAAGTAATAAATTATAACTTTAAGCATACAAATCAATAATTAGAAGCCAAATATGATTGGTAATAGAGTAATTGATATAGGGAAGACCGAAAAAATGATTATGAATTGAATATTTCATAAATAAAATCTAGGTTATACAAAATGAAGGCCAAATACAAGATTCAATAATCAATTTGAGCATCATCATGTGTGGATCTTCTATGAATGTGTAAGGTTTTCCTATTGAAGTGAAATGACTTGAAATTTCAATACAAAAATTTGAATGAGATTAAAAATTAATATATGTTAATTTTTTCAATTTGTTTTTTTTTAAATGAAAATTTTTGAATGGTGAAGTAAACAAAACTCACTTCAATTCAATTTTGAGGTGAAATGATGTGAAAATTCAGTGAAAAAAGTTTGAATCAGGTCAGAAATTAACATATATTATTTTTTTAAGGGAAATTTTTACAAATAAAAAAAATGTCAAACTATTTATATAAAATAGCAAAAAAAATACTGATAGACATTGATAGACTTCTATCAGCATCTATCAGTGATAGACTTCTATCATTTCTATTGCTGATAGATCCTGATAGACTTCTATCAGGGTCTATCACAACTATTTAAAAATTTTGCTATTTTGTGTAAATAGTTTACCTTATTTTTCTGTTTTTAAAACTTCTTCTTTTTTTAATTGTTTTTCTTGGAAATGAAAATTTTGGATGGTCAAGTAAGCAAAACGCACATCAATTTAATTTTAAAGTGAAATGATGTGAAAATTCAACGGAAGAATGAGGTTAAAAATATATATATGTTCTTTTTTGTGGTTTCTTCAAATTCAATTTCTTTTGGAAATGTAAGTCTTGGATTGAAAATTGAGAAAAGTTTAAAATTGGTAAAGATAACACATTGGAAAAGGTTCATTATTTTAATGGAGAGACTCATTTCCTTTTTTTGAAAAAAAGATAACACATTGGAAAAGGTTGATATTGGGAAAAGAAAAAAAATGTTATATGAAGAATTTTCCACGATATCTCCGTGAAATATCCATGATAAGTTGTTGAAATATCCACTATATCCACTAAATATTTTCAGTTACCTATGGAACCATCATGAGTTGGTCTAGTGGTAAATAGGGGCACGACCTTGATAAAGGATTAAAAGGTCATGGGTTCATCCATGGTGGCCACCTACCTAGGATTTGACATCCTACGAGTTTCCTTGACACCCAAATGTGGTAGAGTTAGATAGGTTGTCCCATGAGATTAGTCGAAGTGCGCGTAAGTTAGTACGAACACTAACGGATATCAAAAAAAAAAAAGAAAAAACAGTTACCTATGGAAAAATACTTACCTTTAAGTTTCACATGTAATCTTCACTATCTAGATACTTTTTCAATCTTACAAAGATGATGCACTTCAAATGAGTACGATTAACATGCATTTGAAATATGCTTTAGCTTAGAAATGTCATTTTCATAGCTGAATTGATGTATTTTGGTTTTTAGGTACATAGATATGATTGCAAATCCTGAAGTAGCCGAAACATTCCGAAAAAGAGCAAAGGTGATGTAA

mRNA sequence

ATGCGGGAGCTTTCTGTTTGTGTGAATTCTTTTGAAATCCTGACAAAGTCATTACTTCCACTTCCTGACAAATATCATGGTTTAACTGATGTTGATAAGCGCTACCGCCAAAGGTACATAGATATGATTGCAAATCCTGAAGTAGCCGAAACATTCCGAAAAAGAGCAAAGGTGATGTAA

Coding sequence (CDS)

ATGCGGGAGCTTTCTGTTTGTGTGAATTCTTTTGAAATCCTGACAAAGTCATTACTTCCACTTCCTGACAAATATCATGGTTTAACTGATGTTGATAAGCGCTACCGCCAAAGGTACATAGATATGATTGCAAATCCTGAAGTAGCCGAAACATTCCGAAAAAGAGCAAAGGTGATGTAA

Protein sequence

MRELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVAETFRKRAKVM
Homology
[Close]
BLAST of Lsi10G009190.1 vs. Swiss-Prot
Match: SYKM_ARATH (Lysine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=OVA5 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.8e-23
Identity = 48/57 (84.21%), Postives = 55/57 (96.49%), Query Frame = 1 

Query: 3   ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVAETFRKRAKVM 60
           ELS+CVNSF ILTKSLLPLPDKYHGLTD+DKRYRQRY+DMIANPEVA+ FR+RAK++
Sbjct: 203 ELSICVNSFSILTKSLLPLPDKYHGLTDIDKRYRQRYVDMIANPEVADVFRRRAKIV 259

[Close]
BLAST of Lsi10G009190.1 vs. Swiss-Prot
Match: SYK_SYNE7 (Lysine--tRNA ligase OS=Synechococcus elongatus (strain PCC 7942) GN=lysS PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.0e-18
Identity = 41/56 (73.21%), Postives = 50/56 (89.29%), Query Frame = 1 

Query: 3   ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVAETFRKRAKV 59
           ELS+ V+ + ILTKSL PLPDK+HGLTDV+KRYRQRY+D+I NPEV ETFR+RAK+
Sbjct: 127 ELSIAVDQYAILTKSLQPLPDKWHGLTDVEKRYRQRYVDLIVNPEVRETFRRRAKI 182

[Close]
BLAST of Lsi10G009190.1 vs. Swiss-Prot
Match: SYK_SYNP6 (Lysine--tRNA ligase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=lysS PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.0e-18
Identity = 41/56 (73.21%), Postives = 50/56 (89.29%), Query Frame = 1 

Query: 3   ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVAETFRKRAKV 59
           ELS+ V+ + ILTKSL PLPDK+HGLTDV+KRYRQRY+D+I NPEV ETFR+RAK+
Sbjct: 127 ELSIAVDQYAILTKSLQPLPDKWHGLTDVEKRYRQRYVDLIVNPEVRETFRRRAKI 182

[Close]
BLAST of Lsi10G009190.1 vs. Swiss-Prot
Match: SYK_THEEB (Lysine--tRNA ligase OS=Thermosynechococcus elongatus (strain BP-1) GN=lysS PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.0e-18
Identity = 41/56 (73.21%), Postives = 50/56 (89.29%), Query Frame = 1 

Query: 3   ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVAETFRKRAKV 59
           ELSV V S+ +LTKSLLPLPDK+HGLTDV+KRYRQRY+D+I NP+V +TFRKRA +
Sbjct: 131 ELSVVVESYTMLTKSLLPLPDKWHGLTDVEKRYRQRYVDLIVNPQVRDTFRKRALI 186

[Close]
BLAST of Lsi10G009190.1 vs. Swiss-Prot
Match: SYK_NOSP7 (Lysine--tRNA ligase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=lysS PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 6.6e-18
Identity = 41/56 (73.21%), Postives = 49/56 (87.50%), Query Frame = 1 

Query: 3   ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVAETFRKRAKV 59
           ELSV V  + ILTKSLLPLPDK+HGLTDV KRYRQRY+D+I NPEV +TFR+RA++
Sbjct: 129 ELSVYVKQYTILTKSLLPLPDKWHGLTDVAKRYRQRYVDLIVNPEVRQTFRRRAQI 184

[Close]
BLAST of Lsi10G009190.1 vs. TrEMBL
Match: A0A0A0L1N3_CUCSA (Lysine--tRNA ligase OS=Cucumis sativus GN=Csa_4G268050 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.8e-23
Identity = 54/57 (94.74%), Postives = 57/57 (100.00%), Query Frame = 1 

Query: 3   ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVAETFRKRAKVM 60
           ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVA+TFRKRAK++
Sbjct: 204 ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVADTFRKRAKII 260

[Close]
BLAST of Lsi10G009190.1 vs. TrEMBL
Match: A0A0V0IJA9_SOLCH (Lysine--tRNA ligase OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.8e-22
Identity = 51/57 (89.47%), Postives = 56/57 (98.25%), Query Frame = 1 

Query: 3   ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVAETFRKRAKVM 60
           ELSVCVNSF ILTKSLLPLPDKYHGLTD+DKRYRQRY+DMIANPEVA+TFRKRAK++
Sbjct: 184 ELSVCVNSFSILTKSLLPLPDKYHGLTDIDKRYRQRYVDMIANPEVADTFRKRAKII 240

[Close]
BLAST of Lsi10G009190.1 vs. TrEMBL
Match: K4ASC0_SOLLC (Lysine--tRNA ligase OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.8e-22
Identity = 51/57 (89.47%), Postives = 56/57 (98.25%), Query Frame = 1 

Query: 3   ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVAETFRKRAKVM 60
           ELSVCVNSF ILTKSLLPLPDKYHGLTD+DKRYRQRY+DMIANPEVA+TFRKRAK++
Sbjct: 184 ELSVCVNSFSILTKSLLPLPDKYHGLTDIDKRYRQRYVDMIANPEVADTFRKRAKIV 240

[Close]
BLAST of Lsi10G009190.1 vs. TrEMBL
Match: M1D5C6_SOLTU (Lysine--tRNA ligase OS=Solanum tuberosum GN=PGSC0003DMG400032166 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.8e-22
Identity = 51/57 (89.47%), Postives = 56/57 (98.25%), Query Frame = 1 

Query: 3   ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVAETFRKRAKVM 60
           ELSVCVNSF ILTKSLLPLPDKYHGLTD+DKRYRQRY+DMIANPEVA+TFRKRAK++
Sbjct: 187 ELSVCVNSFSILTKSLLPLPDKYHGLTDIDKRYRQRYVDMIANPEVADTFRKRAKII 243

[Close]
BLAST of Lsi10G009190.1 vs. TrEMBL
Match: B9SBP3_RICCO (Lysine--tRNA ligase OS=Ricinus communis GN=RCOM_0343090 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 9.0e-22
Identity = 50/57 (87.72%), Postives = 55/57 (96.49%), Query Frame = 1 

Query: 3   ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVAETFRKRAKVM 60
           ELS+CVNSF ILTKSLLPLPDKYHGLTDVDKRYRQRY+DMIANPEVA+ FRKRAK++
Sbjct: 187 ELSICVNSFTILTKSLLPLPDKYHGLTDVDKRYRQRYVDMIANPEVADVFRKRAKIV 243

[Close]
BLAST of Lsi10G009190.1 vs. TAIR10
Match: AT3G13490.1 (AT3G13490.1 Lysyl-tRNA synthetase, class II)

HSP 1 Score: 109.0 bits (271), Expect = 1.0e-24
Identity = 48/57 (84.21%), Postives = 55/57 (96.49%), Query Frame = 1 

Query: 3   ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVAETFRKRAKVM 60
           ELS+CVNSF ILTKSLLPLPDKYHGLTD+DKRYRQRY+DMIANPEVA+ FR+RAK++
Sbjct: 203 ELSICVNSFSILTKSLLPLPDKYHGLTDIDKRYRQRYVDMIANPEVADVFRRRAKIV 259

[Close]
BLAST of Lsi10G009190.1 vs. NCBI nr
Match: gi|449463846|ref|XP_004149642.1| (PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X1 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 4.0e-23
Identity = 54/57 (94.74%), Postives = 57/57 (100.00%), Query Frame = 1 

Query: 3   ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVAETFRKRAKVM 60
           ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVA+TFRKRAK++
Sbjct: 204 ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVADTFRKRAKII 260

[Close]
BLAST of Lsi10G009190.1 vs. NCBI nr
Match: gi|778692763|ref|XP_011653521.1| (PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X3 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 4.0e-23
Identity = 54/57 (94.74%), Postives = 57/57 (100.00%), Query Frame = 1 

Query: 3   ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVAETFRKRAKVM 60
           ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVA+TFRKRAK++
Sbjct: 204 ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVADTFRKRAKII 260

[Close]
BLAST of Lsi10G009190.1 vs. NCBI nr
Match: gi|659097943|ref|XP_008449891.1| (PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X1 [Cucumis melo])

HSP 1 Score: 114.8 bits (286), Expect = 5.2e-23
Identity = 53/57 (92.98%), Postives = 57/57 (100.00%), Query Frame = 1 

Query: 3   ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVAETFRKRAKVM 60
           ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRY+DMIANPEVA+TFRKRAK++
Sbjct: 204 ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYVDMIANPEVADTFRKRAKII 260

[Close]
BLAST of Lsi10G009190.1 vs. NCBI nr
Match: gi|659097947|ref|XP_008449893.1| (PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X3 [Cucumis melo])

HSP 1 Score: 114.8 bits (286), Expect = 5.2e-23
Identity = 53/57 (92.98%), Postives = 57/57 (100.00%), Query Frame = 1 

Query: 3   ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVAETFRKRAKVM 60
           ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRY+DMIANPEVA+TFRKRAK++
Sbjct: 204 ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYVDMIANPEVADTFRKRAKII 260

[Close]
BLAST of Lsi10G009190.1 vs. NCBI nr
Match: gi|778692760|ref|XP_011653520.1| (PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 1.2e-22
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 1 

Query: 3   ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVAETFRKRAK 58
           ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVA+TFRKRAK
Sbjct: 204 ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVADTFRKRAK 258

The following BLAST results are available for this feature:
BLAST of Lsi10G009190.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SYKM_ARATH1.8e-2384.21Lysine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=OVA5... [more]
SYK_SYNE71.0e-1873.21Lysine--tRNA ligase OS=Synechococcus elongatus (strain PCC 7942) GN=lysS PE=3 SV... [more]
SYK_SYNP61.0e-1873.21Lysine--tRNA ligase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 14... [more]
SYK_THEEB3.0e-1873.21Lysine--tRNA ligase OS=Thermosynechococcus elongatus (strain BP-1) GN=lysS PE=3 ... [more]
SYK_NOSP76.6e-1873.21Lysine--tRNA ligase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=lys... [more]
BLAST of Lsi10G009190.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L1N3_CUCSA2.8e-2394.74Lysine--tRNA ligase OS=Cucumis sativus GN=Csa_4G268050 PE=3 SV=1[more]
A0A0V0IJA9_SOLCH1.8e-2289.47Lysine--tRNA ligase OS=Solanum chacoense PE=3 SV=1[more]
K4ASC0_SOLLC1.8e-2289.47Lysine--tRNA ligase OS=Solanum lycopersicum PE=3 SV=1[more]
M1D5C6_SOLTU1.8e-2289.47Lysine--tRNA ligase OS=Solanum tuberosum GN=PGSC0003DMG400032166 PE=3 SV=1[more]
B9SBP3_RICCO9.0e-2287.72Lysine--tRNA ligase OS=Ricinus communis GN=RCOM_0343090 PE=3 SV=1[more]
BLAST of Lsi10G009190.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G13490.11.0e-2484.21 Lysyl-tRNA synthetase, class II[more]
BLAST of Lsi10G009190.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449463846|ref|XP_004149642.1|4.0e-2394.74PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X1 [Cucumis sativus... [more]
gi|778692763|ref|XP_011653521.1|4.0e-2394.74PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X3 [Cucumis sativus... [more]
gi|659097943|ref|XP_008449891.1|5.2e-2392.98PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X1 [Cucumis melo][more]
gi|659097947|ref|XP_008449893.1|5.2e-2392.98PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X3 [Cucumis melo][more]
gi|778692760|ref|XP_011653520.1|1.2e-2298.18PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Cucumis sativus... [more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006418tRNA aminoacylation for protein translation
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0004812aminoacyl-tRNA ligase activity
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR018150Aminoacyl-tRNA synthetase, class II (D/K/N)-like
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006418 tRNA aminoacylation for protein translation
biological_process GO:0009085 lysine biosynthetic process
biological_process GO:0006430 lysyl-tRNA aminoacylation
biological_process GO:0048481 plant ovule development
cellular_component GO:0009507 chloroplast
cellular_component GO:0005739 mitochondrion
molecular_function GO:0004812 aminoacyl-tRNA ligase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0004824 lysine-tRNA ligase activity
molecular_function GO:0003676 nucleic acid binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi10G009190Lsi10G009190gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi10G009190.1.CDS.3Lsi10G009190.1.CDS.3CDS
Lsi10G009190.1.CDS.2Lsi10G009190.1.CDS.2CDS
Lsi10G009190.1.CDS.1Lsi10G009190.1.CDS.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi10G009190.1Lsi10G009190.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018150Aminoacyl-tRNA synthetase, class II (D/K/N)-likePANTHERPTHR22594ASPARTYL/LYSYL-TRNA SYNTHETASEcoord: 3..59
score: 2.4
NoneNo IPR availableGENE3DG3DSA:3.30.930.10coord: 20..59
score: 1.
NoneNo IPR availablePANTHERPTHR22594:SF20LYSINE--TRNA LIGASEcoord: 3..59
score: 2.4