Lsi10G009190 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi10G009190
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Lysine--tRNA ligase
Location	chr10 : 13665338 .. 13671226 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTATTCGTGGGACCGGACTCATACTGCTAATCAGCTGCAAGAGTTGTATAAGCATCTAGGTAATGGCGAAGAGTCTAATAGCGACGCGGACTGTGTGTCAATAGCTGGAAGAATTGTGGCTCGCCGAGCGTTTGGAAAGCTTGCATTTCTGACGTTAAGAGATGATTCTGGCACAATTCAGGTTCGTACATTCGCTTGCTTCGATGGACAAAAGCACGCACATATGCTTGCTATTACCTCGTGCTAGGATCAGTGAAGCTCTATGGCGTGCGTATAATTTATTACGCGTTCTATGTAGCAGAGTACACCTTTTTAAGAAGGGGAAAATTTTTGTTTTTGATGTTGGATGGCGGTGCGTATAATTGGGAGATCATTTGACGTTAGGTCTGTTTTATTTGGTTCTCTTGTAGCATCCATGGGAATGAGGCCTTTATAGTTACTTTTAAGTTATATCCTTTATGATCTATTGTACAAGTGCTGTTTTGAAGAGTTTTCTACTCTGCTCTTTATGCTCTTGGTTTGTAAGAGCATTGAGCTTCTCATGAGAGTGTTTTAAAAAGCCCTCTCAGCACACACGCAGGCTCAAGGTGTTGGTCTGGAGCCTCACCTTGGCTCACAAAATAAGGCGCTCCTTTTGTGAAACCCAAGACTTTAAACCCAGGGCCTTGAGGCCTTTTTATTATTTTAAAAATATAGTAATAATTATGATTTTTTCTTCTTTATTAAATAAAAAAAATCAAATTGACTAAGTCTAAATGCAAAATTTCTTGTATTTAGGAGGTTTTTTTTCCCTTCATTTTTACACTTCAACTATGCTTTCTCTTTTGTTGTACTTTTATATATAGTGCACCTCACAAAAAAAAAAAAAAACATTGCGCCTTGTACTTTATTGTGCCTTGAGCTTTAAAAAACACTGATTAACATGATTAAATGGTTAAACTTTTGGTTTCAGCTTTACTGTGAGAAGGAAAGGCTCGTAAATGATCAGTTTGATCAGCTAAAGAATCTTGTTGATATTGGAGATATTCTTGGTGCTCGAGGTTCAATTAAGCGAACTGAGAAAGGTGAGCCCTCACGCTGTTGTTTCGAAATGGTTAGAACACACTCTAGTTTCTTTTAGGAGGTTAGGTCACATTTTACTATTGGCGAGGAAAGGATTCTGCGGTTAACTTCTAGAAGCTAGAGTCTTAAAAGTGAAATACTCATTGGATGCAGCTATTAGAAACAAGAACTGATTTCTCATAATCTAATTGAAATTAGGACTTAGGAGAGAACCTCAAATATTAATCTTATTCTTATCTTAATCTGCCTGTTGCATAGGAAATTGTCAACTAAAATCGACTCTTTTCATTGAATAAAAGCTATATGTTTCTTCAAAGCTTTGCACATTTCTTTCTACATTTTAAATTTAAGACTGGAGAGCATATGTCCATGTGGATCTAAACTGCATTTGCGCCTTATTAGGCATTTGGATTTGTAGTGATTTCATTTTATTTTTTGTCCATTTTCTTCAGGGGAGCTTTCTGTTTGTGTGAATTCTTTTGAAATCCTGACAAAGTCATTACTTCCACTTCCTGACAAATATCATGGTTTAACTGATGTTGATAAGCGCTACCGCCAAAGGTAATTTTTGGTCCTTTTGTTTTCTTTTATATTTGAAAAAATTCTTTTTTTTTTTTTTTTAGGCAAACACTTGTCTATATATGTCTTTCACTATTAGAGTTGTGAAAATCATTTTTTTTTTTGTATTGTTTTTGAAACGGAAATAAAACTTTTTATTGATGAAATGAAAAGAGGCTAATGCTCAAAATACAATGAGACATGAAAAACAAGATAATGCAAATACAACCAAATATAGCCCAACACCGGACTTGCCTAGAAGAATAAAGCAAATACAATCAAATACAACCCATAATGGAATAAATTGGCTCTTTAAATGAAAACTCCAAACACCACTGAAACTGAAACTTTGAGAACAAGCAACCATATGACGAGGACAACTATTATGAGAGAAAGCCAGCTTCAACTTCGACAAAACTGATAATAACCAACAATCCATAAAACCAGAATCGAAGAGGGGAACAAACCGACTAGATTAATTGAGAATCACAACACCTTAGAACCAGAAGAATCCAAATATATAGCCAAAAATTTGGAGAGGGTACAAACAATGCCAGAAAAATCTATCCTTCAATTAAGACAACTTGACCCAGAAAAATCTATCCTTAATTAAGACAACTTTTGCCACCCTGAAATTTGAGACCTCCAAAAACCAGCTTCTTGAATCTGAATTATCGAAGAAACACGCACAACAAGGAAATCTTTCTCATTATTTCTTCCTTTTTTCCCCAAACTCAGCAAACCAAGACTTCTAAGCTTCTTTAATAATTCTGATTTTTTTTTTGGGTCTTATTTGGAAATTGTTAGGTACTAGATATTTAGTTAGTGTAAGTTAAGGAGTATAAGGGTAGTTAGATAGATAGGAAGTTACTAGTAGTTATTGTATAAGGGTGGTTACTACTTGTTATAAATAGAGGGAGGTTATTATGAGAAGGGGAGGTTATTCTATGGAGTGATCTAGGGCTTGGGTGAGGACACTCAAGAGGGAGGTTCCAAGTGCCTTGTACTTGGGTTTATCTTGTATTTTCTTTATAGTTATATCTCAATATATTCAGATATTGTTCTTGTTAGGAAGTATCCTAACAGAAACATACACTTTTCATTAATATAATGAACTAGTAGAAATAACCCCAAAGGGGAAACGTAGAAATAATGATAAAATATAACATCAAAACCAAAACCATCTAAACATAAGGAATTATATAGAAAACATAAAAGCATTCCAATTGAGACAAATATCCTGAATAGAGTAGTCTGCAACTATAAAGCACCGACACTCTTTTAAATGGCCAAGTGTCGGTGTCAGACACGACAGTTGGCGTGACAATTATTTTATTATTAAATTATTTGTTTTCGACACGCCCAAACACAGAAGGGGACACGTCCTGGACATCGTAAGCTGCAAATTAAAAAAAAAACATTTAAAATCAGACATTTTAAAAGCCCACTTTGGCCGTTGTTGCTGAAGGCTCTCCCATGCCGACCACCGATTTTTCCTCCTTCCTCAAATGTAGCGATTTGAAGACCAACCCACCTGCCAGCGACTGAAGAGTCGATGACCACCAACCCTCCACGTCGGTGACTTTGGTTTTTTTTTTTTTGAAACAGAAACAAAACTCTTCTTGATGAAATAAAAAGTGTATAATGCTCGAATTACAATGATACATAAGATCAACTTTGGTTTCTCTCTCCCATCTCTTTTTCTTTTCTTTTATTTTTATGAACATCTTATAACATCACATTTCTGTTTTTAATTTTTTTATGGACTCCACGCCGGTGACTTTGATTTTTATGAACATTCCATTTCTGTTTTTTTCTTCCATTTTAATTTTTTTGTCTCATAGTAGTTACTTTTTTGTTTCCTTTAGTTTTGTTGTGTTAAACTAATTAGTAACTTATCAGAACTTCAATATTGTTATGACTTATGACGTTGGATCGTTGGTCATCTTATCTATTGCATTTTTCATAAATTGTATGGTTGTTATTTTGATGTTTAAAGGTAATGTTTCACAATATTTTATATGCACACCGTATATTTATTATTATTATTTTTTTAAAAAATAATAACGTGTCTCCAACGTGTCATGTCCTACTTTTTTGGAAATTGGCGTGTCGTATTCGTGTTGCATGTCAGTGTCTGTGCTTCTTAGGTCTGCGAAACCTTTTGAGAGAGAACACCATGAAAAGGCCTTTAAGCGAGCCCTAAGCCAAAACAATCATCTCAAGGAAGATATTCATCATGAAAAACCCTCTAATTGAGCTCAAACCATAAATCGAATCATAAATGAAAACTTCAATGGAGCGAAAGGAAACAACATTTTTCATTGATATAAATGAAAAGAGCAAAAGCTTAAAATACAATGTGACTTGATACGAAGGTATAAGAGAAATAAACGTCTAAACAAAAATGATAAATGCATTCCAATTCAGGCATATATCTTGTATGGAAAAATTAGCAAATAGTTTAGAAAGAGAACACCAAGTTGAGGCATTGGTCCTTGCAACTTCAAACCGATCGCTCCATTGTAGAGATTTGTCATTAAAAATCCTCTGATTTCTCTCCAAGAACGAAAATATCGTTATCGGTGTAAATATCAGTGACTCAAATTTACGGATATATCGACAGATATTCCGGAAAAAATTATGGATATCACGGAAATTTATAAAAATATTATGAATTTTTTAGGAAAATTTTAGAACAAACTTATTTAAGTAATAAATTATAACTTTAAGCATACAAATCAATAATTAGAAGCCAAATATGATTGGTAATAGAGTAATTGATATAGGGAAGACCGAAAAAATGATTATGAATTGAATATTTCATAAATAAAATCTAGGTTATACAAAATGAAGGCCAAATACAAGATTCAATAATCAATTTGAGCATCATCATGTGTGGATCTTCTATGAATGTGTAAGGTTTTCCTATTGAAGTGAAATGACTTGAAATTTCAATACAAAAATTTGAATGAGATTAAAAATTAATATATGTTAATTTTTTCAATTTGTTTTTTTTTAAATGAAAATTTTTGAATGGTGAAGTAAACAAAACTCACTTCAATTCAATTTTGAGGTGAAATGATGTGAAAATTCAGTGAAAAAAGTTTGAATCAGGTCAGAAATTAACATATATTATTTTTTTAAGGGAAATTTTTACAAATAAAAAAAATGTCAAACTATTTATATAAAATAGCAAAAAAAATACTGATAGACATTGATAGACTTCTATCAGCATCTATCAGTGATAGACTTCTATCATTTCTATTGCTGATAGATCCTGATAGACTTCTATCAGGGTCTATCACAACTATTTAAAAATTTTGCTATTTTGTGTAAATAGTTTACCTTATTTTTCTGTTTTTAAAACTTCTTCTTTTTTTAATTGTTTTTCTTGGAAATGAAAATTTTGGATGGTCAAGTAAGCAAAACGCACATCAATTTAATTTTAAAGTGAAATGATGTGAAAATTCAACGGAAGAATGAGGTTAAAAATATATATATGTTCTTTTTTGTGGTTTCTTCAAATTCAATTTCTTTTGGAAATGTAAGTCTTGGATTGAAAATTGAGAAAAGTTTAAAATTGGTAAAGATAACACATTGGAAAAGGTTCATTATTTTAATGGAGAGACTCATTTCCTTTTTTTGAAAAAAAGATAACACATTGGAAAAGGTTGATATTGGGAAAAGAAAAAAAATGTTATATGAAGAATTTTCCACGATATCTCCGTGAAATATCCATGATAAGTTGTTGAAATATCCACTATATCCACTAAATATTTTCAGTTACCTATGGAACCATCATGAGTTGGTCTAGTGGTAAATAGGGGCACGACCTTGATAAAGGATTAAAAGGTCATGGGTTCATCCATGGTGGCCACCTACCTAGGATTTGACATCCTACGAGTTTCCTTGACACCCAAATGTGGTAGAGTTAGATAGGTTGTCCCATGAGATTAGTCGAAGTGCGCGTAAGTTAGTACGAACACTAACGGATATCAAAAAAAAAAAAGAAAAAACAGTTACCTATGGAAAAATACTTACCTTTAAGTTTCACATGTAATCTTCACTATCTAGATACTTTTTCAATCTTACAAAGATGATGCACTTCAAATGAGTACGATTAACATGCATTTGAAATATGCTTTAGCTTAGAAATGTCATTTTCATAGCTGAATTGATGTATTTTGGTTTTTAGGTACATAGATATGATTGCAAATCCTGAAGTAGCCGAAACATTCCGAAAAAGAGCAAAGGTGATGTAA

mRNA sequence

ATGCGGGAGCTTTCTGTTTGTGTGAATTCTTTTGAAATCCTGACAAAGTCATTACTTCCACTTCCTGACAAATATCATGGTTTAACTGATGTTGATAAGCGCTACCGCCAAAGGTACATAGATATGATTGCAAATCCTGAAGTAGCCGAAACATTCCGAAAAAGAGCAAAGGTGATGTAA

Coding sequence (CDS)

ATGCGGGAGCTTTCTGTTTGTGTGAATTCTTTTGAAATCCTGACAAAGTCATTACTTCCACTTCCTGACAAATATCATGGTTTAACTGATGTTGATAAGCGCTACCGCCAAAGGTACATAGATATGATTGCAAATCCTGAAGTAGCCGAAACATTCCGAAAAAGAGCAAAGGTGATGTAA

Protein sequence

MRELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVAETFRKRAKVM

Homology

[Close]

BLAST of Lsi10G009190 vs. Swiss-Prot
Match: SYKM_ARATH (Lysine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=OVA5 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.8e-23
Identity = 48/57 (84.21%), Postives = 55/57 (96.49%), Query Frame = 1


Query: 3   ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVAETFRKRAKVM 60
           ELS+CVNSF ILTKSLLPLPDKYHGLTD+DKRYRQRY+DMIANPEVA+ FR+RAK++
Sbjct: 203 ELSICVNSFSILTKSLLPLPDKYHGLTDIDKRYRQRYVDMIANPEVADVFRRRAKIV 259

[Close]

BLAST of Lsi10G009190 vs. Swiss-Prot
Match: SYK_SYNE7 (Lysine--tRNA ligase OS=Synechococcus elongatus (strain PCC 7942) GN=lysS PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.0e-18
Identity = 41/56 (73.21%), Postives = 50/56 (89.29%), Query Frame = 1


Query: 3   ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVAETFRKRAKV 59
           ELS+ V+ + ILTKSL PLPDK+HGLTDV+KRYRQRY+D+I NPEV ETFR+RAK+
Sbjct: 127 ELSIAVDQYAILTKSLQPLPDKWHGLTDVEKRYRQRYVDLIVNPEVRETFRRRAKI 182

[Close]

BLAST of Lsi10G009190 vs. Swiss-Prot
Match: SYK_SYNP6 (Lysine--tRNA ligase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=lysS PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.0e-18
Identity = 41/56 (73.21%), Postives = 50/56 (89.29%), Query Frame = 1


Query: 3   ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVAETFRKRAKV 59
           ELS+ V+ + ILTKSL PLPDK+HGLTDV+KRYRQRY+D+I NPEV ETFR+RAK+
Sbjct: 127 ELSIAVDQYAILTKSLQPLPDKWHGLTDVEKRYRQRYVDLIVNPEVRETFRRRAKI 182

[Close]

BLAST of Lsi10G009190 vs. Swiss-Prot
Match: SYK_THEEB (Lysine--tRNA ligase OS=Thermosynechococcus elongatus (strain BP-1) GN=lysS PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.0e-18
Identity = 41/56 (73.21%), Postives = 50/56 (89.29%), Query Frame = 1


Query: 3   ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVAETFRKRAKV 59
           ELSV V S+ +LTKSLLPLPDK+HGLTDV+KRYRQRY+D+I NP+V +TFRKRA +
Sbjct: 131 ELSVVVESYTMLTKSLLPLPDKWHGLTDVEKRYRQRYVDLIVNPQVRDTFRKRALI 186

[Close]

BLAST of Lsi10G009190 vs. Swiss-Prot
Match: SYK_NOSP7 (Lysine--tRNA ligase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=lysS PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 6.6e-18
Identity = 41/56 (73.21%), Postives = 49/56 (87.50%), Query Frame = 1


Query: 3   ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVAETFRKRAKV 59
           ELSV V  + ILTKSLLPLPDK+HGLTDV KRYRQRY+D+I NPEV +TFR+RA++
Sbjct: 129 ELSVYVKQYTILTKSLLPLPDKWHGLTDVAKRYRQRYVDLIVNPEVRQTFRRRAQI 184

[Close]

BLAST of Lsi10G009190 vs. TrEMBL
Match: A0A0A0L1N3_CUCSA (Lysine--tRNA ligase OS=Cucumis sativus GN=Csa_4G268050 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.8e-23
Identity = 54/57 (94.74%), Postives = 57/57 (100.00%), Query Frame = 1


Query: 3   ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVAETFRKRAKVM 60
           ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVA+TFRKRAK++
Sbjct: 204 ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVADTFRKRAKII 260

[Close]

BLAST of Lsi10G009190 vs. TrEMBL
Match: A0A0V0IJA9_SOLCH (Lysine--tRNA ligase OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.8e-22
Identity = 51/57 (89.47%), Postives = 56/57 (98.25%), Query Frame = 1


Query: 3   ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVAETFRKRAKVM 60
           ELSVCVNSF ILTKSLLPLPDKYHGLTD+DKRYRQRY+DMIANPEVA+TFRKRAK++
Sbjct: 184 ELSVCVNSFSILTKSLLPLPDKYHGLTDIDKRYRQRYVDMIANPEVADTFRKRAKII 240

[Close]

BLAST of Lsi10G009190 vs. TrEMBL
Match: K4ASC0_SOLLC (Lysine--tRNA ligase OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.8e-22
Identity = 51/57 (89.47%), Postives = 56/57 (98.25%), Query Frame = 1


Query: 3   ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVAETFRKRAKVM 60
           ELSVCVNSF ILTKSLLPLPDKYHGLTD+DKRYRQRY+DMIANPEVA+TFRKRAK++
Sbjct: 184 ELSVCVNSFSILTKSLLPLPDKYHGLTDIDKRYRQRYVDMIANPEVADTFRKRAKIV 240

[Close]

BLAST of Lsi10G009190 vs. TrEMBL
Match: M1D5C6_SOLTU (Lysine--tRNA ligase OS=Solanum tuberosum GN=PGSC0003DMG400032166 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.8e-22
Identity = 51/57 (89.47%), Postives = 56/57 (98.25%), Query Frame = 1


Query: 3   ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVAETFRKRAKVM 60
           ELSVCVNSF ILTKSLLPLPDKYHGLTD+DKRYRQRY+DMIANPEVA+TFRKRAK++
Sbjct: 187 ELSVCVNSFSILTKSLLPLPDKYHGLTDIDKRYRQRYVDMIANPEVADTFRKRAKII 243

[Close]

BLAST of Lsi10G009190 vs. TrEMBL
Match: B9SBP3_RICCO (Lysine--tRNA ligase OS=Ricinus communis GN=RCOM_0343090 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 9.0e-22
Identity = 50/57 (87.72%), Postives = 55/57 (96.49%), Query Frame = 1


Query: 3   ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVAETFRKRAKVM 60
           ELS+CVNSF ILTKSLLPLPDKYHGLTDVDKRYRQRY+DMIANPEVA+ FRKRAK++
Sbjct: 187 ELSICVNSFTILTKSLLPLPDKYHGLTDVDKRYRQRYVDMIANPEVADVFRKRAKIV 243

[Close]

BLAST of Lsi10G009190 vs. TAIR10
Match: AT3G13490.1 (AT3G13490.1 Lysyl-tRNA synthetase, class II)

HSP 1 Score: 109.0 bits (271), Expect = 1.0e-24
Identity = 48/57 (84.21%), Postives = 55/57 (96.49%), Query Frame = 1


Query: 3   ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVAETFRKRAKVM 60
           ELS+CVNSF ILTKSLLPLPDKYHGLTD+DKRYRQRY+DMIANPEVA+ FR+RAK++
Sbjct: 203 ELSICVNSFSILTKSLLPLPDKYHGLTDIDKRYRQRYVDMIANPEVADVFRRRAKIV 259

[Close]

BLAST of Lsi10G009190 vs. NCBI nr
Match: gi|449463846|ref|XP_004149642.1| (PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X1 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 4.0e-23
Identity = 54/57 (94.74%), Postives = 57/57 (100.00%), Query Frame = 1


Query: 3   ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVAETFRKRAKVM 60
           ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVA+TFRKRAK++
Sbjct: 204 ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVADTFRKRAKII 260

[Close]

BLAST of Lsi10G009190 vs. NCBI nr
Match: gi|778692763|ref|XP_011653521.1| (PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X3 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 4.0e-23
Identity = 54/57 (94.74%), Postives = 57/57 (100.00%), Query Frame = 1


Query: 3   ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVAETFRKRAKVM 60
           ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVA+TFRKRAK++
Sbjct: 204 ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVADTFRKRAKII 260

[Close]

BLAST of Lsi10G009190 vs. NCBI nr
Match: gi|659097943|ref|XP_008449891.1| (PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X1 [Cucumis melo])

HSP 1 Score: 114.8 bits (286), Expect = 5.2e-23
Identity = 53/57 (92.98%), Postives = 57/57 (100.00%), Query Frame = 1


Query: 3   ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVAETFRKRAKVM 60
           ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRY+DMIANPEVA+TFRKRAK++
Sbjct: 204 ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYVDMIANPEVADTFRKRAKII 260

[Close]

BLAST of Lsi10G009190 vs. NCBI nr
Match: gi|659097947|ref|XP_008449893.1| (PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X3 [Cucumis melo])

HSP 1 Score: 114.8 bits (286), Expect = 5.2e-23
Identity = 53/57 (92.98%), Postives = 57/57 (100.00%), Query Frame = 1


Query: 3   ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVAETFRKRAKVM 60
           ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRY+DMIANPEVA+TFRKRAK++
Sbjct: 204 ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYVDMIANPEVADTFRKRAKII 260

[Close]

BLAST of Lsi10G009190 vs. NCBI nr
Match: gi|778692760|ref|XP_011653520.1| (PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 1.2e-22
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 1


Query: 3   ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVAETFRKRAK 58
           ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVA+TFRKRAK
Sbjct: 204 ELSVCVNSFEILTKSLLPLPDKYHGLTDVDKRYRQRYIDMIANPEVADTFRKRAK 258

The following BLAST results are available for this feature:

BLAST of Lsi10G009190 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SYKM_ARATH	1.8e-23	84.21	Lysine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=OVA5...	[more]
SYK_SYNE7	1.0e-18	73.21	Lysine--tRNA ligase OS=Synechococcus elongatus (strain PCC 7942) GN=lysS PE=3 SV...	[more]
SYK_SYNP6	1.0e-18	73.21	Lysine--tRNA ligase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 14...	[more]
SYK_THEEB	3.0e-18	73.21	Lysine--tRNA ligase OS=Thermosynechococcus elongatus (strain BP-1) GN=lysS PE=3 ...	[more]
SYK_NOSP7	6.6e-18	73.21	Lysine--tRNA ligase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=lys...	[more]

BLAST of Lsi10G009190 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1N3_CUCSA	2.8e-23	94.74	Lysine--tRNA ligase OS=Cucumis sativus GN=Csa_4G268050 PE=3 SV=1	[more]
A0A0V0IJA9_SOLCH	1.8e-22	89.47	Lysine--tRNA ligase OS=Solanum chacoense PE=3 SV=1	[more]
K4ASC0_SOLLC	1.8e-22	89.47	Lysine--tRNA ligase OS=Solanum lycopersicum PE=3 SV=1	[more]
M1D5C6_SOLTU	1.8e-22	89.47	Lysine--tRNA ligase OS=Solanum tuberosum GN=PGSC0003DMG400032166 PE=3 SV=1	[more]
B9SBP3_RICCO	9.0e-22	87.72	Lysine--tRNA ligase OS=Ricinus communis GN=RCOM_0343090 PE=3 SV=1	[more]

BLAST of Lsi10G009190 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G13490.1	1.0e-24	84.21	Lysyl-tRNA synthetase, class II	[more]

BLAST of Lsi10G009190 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449463846\|ref\|XP_004149642.1\|	4.0e-23	94.74	PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X1 [Cucumis sativus...	[more]
gi\|778692763\|ref\|XP_011653521.1\|	4.0e-23	94.74	PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X3 [Cucumis sativus...	[more]
gi\|659097943\|ref\|XP_008449891.1\|	5.2e-23	92.98	PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X1 [Cucumis melo]	[more]
gi\|659097947\|ref\|XP_008449893.1\|	5.2e-23	92.98	PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X3 [Cucumis melo]	[more]
gi\|778692760\|ref\|XP_011653520.1\|	1.2e-22	98.18	PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Cucumis sativus...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006418	tRNA aminoacylation for protein translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding
GO:0004812	aminoacyl-tRNA ligase activity
GO:0000166	nucleotide binding

Vocabulary: **INTERPRO**
Term	Definition
IPR018150	Aminoacyl-tRNA synthetase, class II (D/K/N)-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009085	lysine biosynthetic process
biological_process	GO:0006430	lysyl-tRNA aminoacylation
biological_process	GO:0048481	plant ovule development
biological_process	GO:0006418	tRNA aminoacylation for protein translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004824	lysine-tRNA ligase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004812	aminoacyl-tRNA ligase activity
molecular_function	GO:0000166	nucleotide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G009190.1	Lsi10G009190.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018150	Aminoacyl-tRNA synthetase, class II (D/K/N)-like	PANTHER	PTHR22594	ASPARTYL/LYSYL-TRNA SYNTHETASE	coord: 3..59 score: 2.4
None	No IPR available	GENE3D	G3DSA:3.30.930.10		coord: 20..59 score: 1.
None	No IPR available	PANTHER	PTHR22594:SF20	LYSINE--TRNA LIGASE	coord: 3..59 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi10G009190	Cla003125	Watermelon (97103) v1	lsiwmB078

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi10G009190	Cucumber (Gy14) v2	cgyblsiB235
Lsi10G009190	Melon (DHL92) v3.6.1	lsimedB074
Lsi10G009190	Silver-seed gourd	carlsiB458
Lsi10G009190	Cucumber (Chinese Long) v3	cuclsiB271
Lsi10G009190	Watermelon (97103) v2	lsiwmbB052
Lsi10G009190	Wax gourd	lsiwgoB079
Lsi10G009190	Cucumber (Gy14) v1	cgylsiB245
Lsi10G009190	Cucurbita maxima (Rimu)	cmalsiB500
Lsi10G009190	Cucurbita maxima (Rimu)	cmalsiB540
Lsi10G009190	Cucurbita moschata (Rifu)	cmolsiB484
Lsi10G009190	Cucurbita moschata (Rifu)	cmolsiB525
Lsi10G009190	Cucurbita pepo (Zucchini)	cpelsiB227
Lsi10G009190	Cucurbita pepo (Zucchini)	cpelsiB598
Lsi10G009190	Wild cucumber (PI 183967)	cpilsiB245
Lsi10G009190	Cucumber (Chinese Long) v2	culsiB246
Lsi10G009190	Melon (DHL92) v3.5.1	lsimeB072
Lsi10G009190	Watermelon (Charleston Gray)	lsiwcgB054