Lsi10G008350.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi10G008350.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr10 : 11792476 .. 11792786 (-)
Sequence length	249

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAAATTTTCAGATAGTAATAAGGAGAAGTTGTTTGAGTTATGGAGCAACATTTGGGGCGACCAAAACCCTAAAACTACTGGACCCCCATATTCTTCAATAATTCAATGGAAGCCTGAAGAAGTTGATCGGTTCTATGAGAAAGGTTTCAAATTTTTGTTGAAAATATCAAGCTTGACATCACCTACATTCCACCTGATGTTTTGCAACACATTAGAAAAGAATGGGAAGATGTGAGGAGTGCTAGGAATGATTATCAGTTCAAGAATGCCAAGTTACTTGTGGAAATCTCTGATATTAAGATGTAG

mRNA sequence

ATGAATAGTAATAAGGAGAAGTTGTTTGAGTTATGGAGCAACATTTGGGGCGACCAAAACCCTAAAACTACTGGACCCCCATATTCTTCAATAATTCAATGGAAGCCTGAAGAACTTGACATCACCTACATTCCACCTGATGTTTTGCAACACATTAGAAAAGAATGGGAAGATGTGAGGAGTGCTAGGAATGATTATCAGTTCAAGAATGCCAAGTTACTTGTGGAAATCTCTGATATTAAGATGTAG

Coding sequence (CDS)

ATGAATAGTAATAAGGAGAAGTTGTTTGAGTTATGGAGCAACATTTGGGGCGACCAAAACCCTAAAACTACTGGACCCCCATATTCTTCAATAATTCAATGGAAGCCTGAAGAACTTGACATCACCTACATTCCACCTGATGTTTTGCAACACATTAGAAAAGAATGGGAAGATGTGAGGAGTGCTAGGAATGATTATCAGTTCAAGAATGCCAAGTTACTTGTGGAAATCTCTGATATTAAGATGTAG

Protein sequence

MNSNKEKLFELWSNIWGDQNPKTTGPPYSSIIQWKPEELDITYIPPDVLQHIRKEWEDVRSARNDYQFKNAKLLVEISDIKM

Homology

[Close]

BLAST of Lsi10G008350.1 vs. TrEMBL
Match: A0A0A0L833_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G498910 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.2e-13
Identity = 49/87 (56.32%), Postives = 59/87 (67.82%), Query Frame = 1


Query: 2   NSNKEKLFELWSNIWGDQ-NPKTTGPPYS-------SIIQWKPEEL--DITYIPPDVLQH 61
           +SN +KLFEL SNIWGD+ NPK +  P +        + Q   E+L  DIT+IPP  LQ+
Sbjct: 92  DSNYKKLFELSSNIWGDEENPKLSEDPSARGFYNDEKVFQMALEKLKVDITFIPPHDLQN 151

Query: 62  IRKEWEDVRSARNDYQFKNAKLLVEIS 79
           IRKEWEDV SARN Y+ K AKLL EIS
Sbjct: 152 IRKEWEDVMSARNGYELKYAKLLEEIS 178

[Close]

BLAST of Lsi10G008350.1 vs. NCBI nr
Match: gi|700202957|gb|KGN58090.1| (hypothetical protein Csa_3G498910 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 1.8e-13
Identity = 49/87 (56.32%), Postives = 59/87 (67.82%), Query Frame = 1


Query: 2   NSNKEKLFELWSNIWGDQ-NPKTTGPPYS-------SIIQWKPEEL--DITYIPPDVLQH 61
           +SN +KLFEL SNIWGD+ NPK +  P +        + Q   E+L  DIT+IPP  LQ+
Sbjct: 92  DSNYKKLFELSSNIWGDEENPKLSEDPSARGFYNDEKVFQMALEKLKVDITFIPPHDLQN 151

Query: 62  IRKEWEDVRSARNDYQFKNAKLLVEIS 79
           IRKEWEDV SARN Y+ K AKLL EIS
Sbjct: 152 IRKEWEDVMSARNGYELKYAKLLEEIS 178

The following BLAST results are available for this feature:

BLAST of Lsi10G008350.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi10G008350.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L833_CUCSA	1.2e-13	56.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G498910 PE=4 SV=1	[more]

BLAST of Lsi10G008350.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi10G008350.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202957\|gb\|KGN58090.1\|	1.8e-13	56.32	hypothetical protein Csa_3G498910 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi10G008350	Lsi10G008350	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi10G008350.1.CDS.3	Lsi10G008350.1.CDS.3	CDS
Lsi10G008350.1.CDS.2	Lsi10G008350.1.CDS.2	CDS
Lsi10G008350.1.CDS.1	Lsi10G008350.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi10G008350.1	Lsi10G008350.1-protein	polypeptide