Lsi10G008350 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi10G008350
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr10 : 11792476 .. 11792786 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTAAATTTTCAGATAGTAATAAGGAGAAGTTGTTTGAGTTATGGAGCAACATTTGGGGCGACCAAAACCCTAAAACTACTGGACCCCCATATTCTTCAATAATTCAATGGAAGCCTGAAGAAGTTGATCGGTTCTATGAGAAAGGTTTCAAATTTTTGTTGAAAATATCAAGCTTGACATCACCTACATTCCACCTGATGTTTTGCAACACATTAGAAAAGAATGGGAAGATGTGAGGAGTGCTAGGAATGATTATCAGTTCAAGAATGCCAAGTTACTTGTGGAAATCTCTGATATTAAGATGTAG

mRNA sequence

ATGAATAGTAATAAGGAGAAGTTGTTTGAGTTATGGAGCAACATTTGGGGCGACCAAAACCCTAAAACTACTGGACCCCCATATTCTTCAATAATTCAATGGAAGCCTGAAGAACTTGACATCACCTACATTCCACCTGATGTTTTGCAACACATTAGAAAAGAATGGGAAGATGTGAGGAGTGCTAGGAATGATTATCAGTTCAAGAATGCCAAGTTACTTGTGGAAATCTCTGATATTAAGATGTAG

Coding sequence (CDS)

ATGAATAGTAATAAGGAGAAGTTGTTTGAGTTATGGAGCAACATTTGGGGCGACCAAAACCCTAAAACTACTGGACCCCCATATTCTTCAATAATTCAATGGAAGCCTGAAGAACTTGACATCACCTACATTCCACCTGATGTTTTGCAACACATTAGAAAAGAATGGGAAGATGTGAGGAGTGCTAGGAATGATTATCAGTTCAAGAATGCCAAGTTACTTGTGGAAATCTCTGATATTAAGATGTAG

Protein sequence

MNSNKEKLFELWSNIWGDQNPKTTGPPYSSIIQWKPEELDITYIPPDVLQHIRKEWEDVRSARNDYQFKNAKLLVEISDIKM
Homology
[Close]
BLAST of Lsi10G008350 vs. TrEMBL
Match: A0A0A0L833_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G498910 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.2e-13
Identity = 49/87 (56.32%), Postives = 59/87 (67.82%), Query Frame = 1 

Query: 2   NSNKEKLFELWSNIWGDQ-NPKTTGPPYS-------SIIQWKPEEL--DITYIPPDVLQH 61
           +SN +KLFEL SNIWGD+ NPK +  P +        + Q   E+L  DIT+IPP  LQ+
Sbjct: 92  DSNYKKLFELSSNIWGDEENPKLSEDPSARGFYNDEKVFQMALEKLKVDITFIPPHDLQN 151

Query: 62  IRKEWEDVRSARNDYQFKNAKLLVEIS 79
           IRKEWEDV SARN Y+ K AKLL EIS
Sbjct: 152 IRKEWEDVMSARNGYELKYAKLLEEIS 178

[Close]
BLAST of Lsi10G008350 vs. NCBI nr
Match: gi|700202957|gb|KGN58090.1| (hypothetical protein Csa_3G498910 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 1.8e-13
Identity = 49/87 (56.32%), Postives = 59/87 (67.82%), Query Frame = 1 

Query: 2   NSNKEKLFELWSNIWGDQ-NPKTTGPPYS-------SIIQWKPEEL--DITYIPPDVLQH 61
           +SN +KLFEL SNIWGD+ NPK +  P +        + Q   E+L  DIT+IPP  LQ+
Sbjct: 92  DSNYKKLFELSSNIWGDEENPKLSEDPSARGFYNDEKVFQMALEKLKVDITFIPPHDLQN 151

Query: 62  IRKEWEDVRSARNDYQFKNAKLLVEIS 79
           IRKEWEDV SARN Y+ K AKLL EIS
Sbjct: 152 IRKEWEDVMSARNGYELKYAKLLEEIS 178

The following BLAST results are available for this feature:
BLAST of Lsi10G008350 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi10G008350 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L833_CUCSA1.2e-1356.32Uncharacterized protein OS=Cucumis sativus GN=Csa_3G498910 PE=4 SV=1[more]
BLAST of Lsi10G008350 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi10G008350 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202957|gb|KGN58090.1|1.8e-1356.32hypothetical protein Csa_3G498910 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G008350.1Lsi10G008350.1mRNA