Lsi10G006320.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi10G006320.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	BnaC08g47040D protein
Location	chr10 : 8830009 .. 8831718 (+)
Sequence length	375

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGAGTCAAGAAATACTTCGACTTCCATTTGGCCTGAGCTTGTGGATACTCACGACAGAGTCGACGATCCGACCTCATTGGTAAGTGAAGTGAAAATTTAGGAGTTGGAGTTTTCTCACTGTATTTGTATAGGTTTGTGTCAAAAGTGTGTGTTCAATCTCAAGTGAAGATAATCCTCCAAGGTTTTTAGAGGATGGCACTTGCATTTCCAGACATTTAACTTCTGGATTGTAATTGTGACTGTGAGGTACTCAATAGTGTATGAATATAGTGTCTTGATCTATTACAATATACCTTTTTTCTCCCTCTTTTCCTATTTAAGTTCTAGTAACATTCATTTTAACGTTAAAAATTAACTCTGTTATACTTGAATCATATGAATACAAGTAGATAATTGAACTACTTTTACCCGAAAATACGAGGACTAACGATATATTTTGTCGTTTACTCTTGCATCCCTCTTGAATGTATTGCCTGTCGTCTTCTTTTGCGAATTTCTCGAACGAGTTTCACCATTTTCCTTGTTCTTTCTTTCTCCATTGTCGGAAAGTGTTTGCTTTTGGCCTTTGCACTTATAGGATCAAAAGTGCTTTGTTTTGAGGATAGGGTGCAGATTGACTGGAAACAAGAAGTAGAAGCCATTCAAGTCAAATCAGAGATGACAAAGTAATGTGATTCTTGTTAAGTCTGTATGAGTGCTGTGTCATCTCATCTCATCTCATATATGTTGAGTGCAAATCCTGGGCTCTATGTCCTAGGTGGGTCATTTCACTAATAGGTCAGGTTGTGTAGATCGATATTAAAATATAATTAACCATATTCTTCGTCAAATCAGCTTCAATTTGATAGCGACACTATTGACCTCTTCTCAAAGTGGTCGGTTGAAGGTTCCAATCAAAAAATTGACGGTGGATTTTGTGTTATGTTTGAAATTAAATATTTATTTTCTCGATTGGTTTTGTTTTCATGACTTTAGTTAGTTTCATTGAATATTTTTTAATTGGTATTAATTAAAGTAGTAAAGTCAAAGTTAAATAGTAACTTTTTTTTTGCTAAGGCCACAGTTTTTTTTTTTCAAGAGGGTAGCATTTGCCATTTTTCGTCGATCTTTCAGGGGTATCATTGATCATTTTTAAAACGTTCAATTCTCATTTTAATTTTTGGATAAATTAGCCAGAGATTGTTATAAGTGGCAGCTGACGACAACGTTAGGGATTTTGGAGACGTCAGTGGGGGCCTCGAGAATAGTTATCTTTTCTGTTTAACAACCTGCCCATCCTGGAAACGGCTCAGCCGGAGATAGGGTCCAGTGGCTGGAAGAGCACTACACGTCGCATGGTGTCTGATGCTCCCCCGGCGGCCCTTGAAAATCTGGAGGACCGAGTGCCTCCCACGTCCAGTCGTACTCATAACCACATCAGGTCTCCAAGGGGAACAACCTCTGGTCAATGGAACAATGTAGGTAAGGGAAGTTAGCAAAATGGATCTTTAACCTTGGGAAAAGGATTGGCTCTGAGGGCTGGGCACGGGGTTCCAGTCCCAAACTTATCGGTTGTCGGTGGATTGCTTGAGTTGCTCCCGCAGCGAGAGCGGGTCGCCGCGTGTCAACCGGGGGACGGACTAAGAACGGCTCCGTCGAAGGCCTTCCCCAGGCATCAAACAATCAACTCAGAACTGGTATGGACAAGGGGAATCTGACTCGTTAA

mRNA sequence

ATGGCTGAGTCAAGAAATACTTCGACTTCCATTTGGCCTGAGCTTGTGGATACTCACGACAGAGTCGACGATCCGACCTCATTGCCGGAGATAGGGTCCAGTGGCTGGAAGAGCACTACACGTCGCATGGTGTCTGATGCTCCCCCGGCGGCCCTTGAAAATCTGGAGGACCGAGTGCCTCCCACGTCCAGTCGTACTCATAACCACATCAGGTCTCCAAGGGGAACAACCTCTGGTCAATGGAACAATGTAGCGAGAGCGGGTCGCCGCGTGTCAACCGGGGGACGGACTAAGAACGGCTCCGTCGAAGGCCTTCCCCAGGCATCAAACAATCAACTCAGAACTGGTATGGACAAGGGGAATCTGACTCGTTAA

Coding sequence (CDS)

ATGGCTGAGTCAAGAAATACTTCGACTTCCATTTGGCCTGAGCTTGTGGATACTCACGACAGAGTCGACGATCCGACCTCATTGCCGGAGATAGGGTCCAGTGGCTGGAAGAGCACTACACGTCGCATGGTGTCTGATGCTCCCCCGGCGGCCCTTGAAAATCTGGAGGACCGAGTGCCTCCCACGTCCAGTCGTACTCATAACCACATCAGGTCTCCAAGGGGAACAACCTCTGGTCAATGGAACAATGTAGCGAGAGCGGGTCGCCGCGTGTCAACCGGGGGACGGACTAAGAACGGCTCCGTCGAAGGCCTTCCCCAGGCATCAAACAATCAACTCAGAACTGGTATGGACAAGGGGAATCTGACTCGTTAA

Protein sequence

MAESRNTSTSIWPELVDTHDRVDDPTSLPEIGSSGWKSTTRRMVSDAPPAALENLEDRVPPTSSRTHNHIRSPRGTTSGQWNNVARAGRRVSTGGRTKNGSVEGLPQASNNQLRTGMDKGNLTR

Homology

[Close]

BLAST of Lsi10G006320.1 vs. TrEMBL
Match: A0A0P1A454_9STRA (Atp synthase subunit beta OS=Plasmopara halstedii PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 7.4e-18
Identity = 62/119 (52.10%), Postives = 71/119 (59.66%), Query Frame = 1


Query: 26  TSLPEIGSSGWKSTTRRMVSDAPPAALENLEDRVPPT----SSRTHNHIRSPRG------ 85
           T+  E+GSSGWKST RR VS APPAALEN EDRVPPT     SR +  + S +G      
Sbjct: 208 TTQSEVGSSGWKSTARRAVSGAPPAALENPEDRVPPTPGRKGSRQNGSVTSGKGLALRAG 267

Query: 86  -------TTSGQWN----NVARAGRRVSTGGRTKNGSVEGLPQASNNQLRTGMDKGNLT 124
                      +W     + ARAG RV  GGRT NG   GLP+ASN+QLRTG DKGN T
Sbjct: 268 HGGPCPEPVGCRWTARAASAARAGHRVPAGGRTGNGLFGGLPRASNSQLRTGTDKGNPT 326

[Close]

BLAST of Lsi10G006320.1 vs. TrEMBL
Match: A0A151QL08_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_049375 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 7.7e-15
Identity = 53/92 (57.61%), Postives = 59/92 (64.13%), Query Frame = 1


Query: 29  PEIGSSGWKSTTRRMVSDAPPAALENLEDRVPPTSSRTHNHIRSPRGTTSG-QWN----N 88
           PE+GSSGWKS  RR+VS APPA LEN EDRVPPT  RTHN IRSP     G +W      
Sbjct: 57  PEVGSSGWKSIARRVVSGAPPATLENPEDRVPPTPGRTHNRIRSPSPEPVGCRWTARAAP 116

Query: 89  VARAGRRVSTGGRTKNG----SVEGLPQASNN 112
            ARAGRRV  GGR  NG    S  G+ Q++ N
Sbjct: 117 AARAGRRVPVGGRIGNGPFGASSPGVEQSTQN 148

[Close]

BLAST of Lsi10G006320.1 vs. TrEMBL
Match: A5B939_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022570 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.5e-13
Identity = 56/128 (43.75%), Postives = 67/128 (52.34%), Query Frame = 1


Query: 26  TSLPEIGSSGWKSTTRRMVSDAPPAALENLEDRVPPTSSRTHNHIRSPRG-------TTS 85
           T+  ++G S WKS  RR+VSDAP    EN EDRVPPT  RT+N IRSP          TS
Sbjct: 29  TAQSKVGFSVWKSNVRRVVSDAPSTTPENPEDRVPPTPGRTYNRIRSPSKESRQNGFVTS 88

Query: 86  GQ-------------------WNN----VARAGRRVSTGGRTKNGSVEGLPQASNNQLRT 124
           G+                   W       AR G RV   G T+NGS+ G P+ASN++LR 
Sbjct: 89  GKGFTLRAGHGGPSPEPVDCRWTARAAPAARVGHRVPVRGWTRNGSLGGFPRASNSRLRI 148

[Close]

BLAST of Lsi10G006320.1 vs. TrEMBL
Match: A0A0L9TWC3_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g094600 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 7.2e-13
Identity = 40/57 (70.18%), Postives = 45/57 (78.95%), Query Frame = 1


Query: 22  VDDPTSLPEIGSSGWKSTTRRMVSDAPPAALENLEDRVPPTSSRTHNHIRSPRGTTS 79
           V+   + PE+GSSGWKST RR+VS APPAALEN EDRVPPT  RTHN IRSP  TT+
Sbjct: 82  VNGTCTWPEVGSSGWKSTARRVVSGAPPAALENPEDRVPPTPGRTHNRIRSPSETTA 138

[Close]

BLAST of Lsi10G006320.1 vs. TrEMBL
Match: A0A0D3BAS1_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 9.4e-13
Identity = 48/92 (52.17%), Postives = 57/92 (61.96%), Query Frame = 1


Query: 4   SRNTSTSIWPELVDTHDRVDDPTSLPEIGSSGWKSTTRRMVSDAPPAALENLEDRVPPTS 63
           SRN   S+ P L          T+ PE+GSSGWKST RR+VS A PAALEN EDRVP T 
Sbjct: 520 SRNPLRSVLPTL---------ETAQPEVGSSGWKSTARRVVSGAFPAALENPEDRVPLTP 579

Query: 64  SRTHNHIRSPRGTTSGQWNNVARAGRRVSTGG 96
            RTHN IRSPR   S +W  +   G+R+ + G
Sbjct: 580 GRTHNRIRSPRQGKSAKW--IRNFGKRIGSEG 600

[Close]

BLAST of Lsi10G006320.1 vs. NCBI nr
Match: gi|953504095|emb|CEG35068.1| (atp synthase subunit beta [Plasmopara halstedii])

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-17
Identity = 62/119 (52.10%), Postives = 71/119 (59.66%), Query Frame = 1


Query: 26  TSLPEIGSSGWKSTTRRMVSDAPPAALENLEDRVPPT----SSRTHNHIRSPRG------ 85
           T+  E+GSSGWKST RR VS APPAALEN EDRVPPT     SR +  + S +G      
Sbjct: 208 TTQSEVGSSGWKSTARRAVSGAPPAALENPEDRVPPTPGRKGSRQNGSVTSGKGLALRAG 267

Query: 86  -------TTSGQWN----NVARAGRRVSTGGRTKNGSVEGLPQASNNQLRTGMDKGNLT 124
                      +W     + ARAG RV  GGRT NG   GLP+ASN+QLRTG DKGN T
Sbjct: 268 HGGPCPEPVGCRWTARAASAARAGHRVPAGGRTGNGLFGGLPRASNSQLRTGTDKGNPT 326

[Close]

BLAST of Lsi10G006320.1 vs. NCBI nr
Match: gi|1012316387|gb|KYP30978.1| (hypothetical protein KK1_049375 [Cajanus cajan])

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-14
Identity = 53/92 (57.61%), Postives = 59/92 (64.13%), Query Frame = 1


Query: 29  PEIGSSGWKSTTRRMVSDAPPAALENLEDRVPPTSSRTHNHIRSPRGTTSG-QWN----N 88
           PE+GSSGWKS  RR+VS APPA LEN EDRVPPT  RTHN IRSP     G +W      
Sbjct: 57  PEVGSSGWKSIARRVVSGAPPATLENPEDRVPPTPGRTHNRIRSPSPEPVGCRWTARAAP 116

Query: 89  VARAGRRVSTGGRTKNG----SVEGLPQASNN 112
            ARAGRRV  GGR  NG    S  G+ Q++ N
Sbjct: 117 AARAGRRVPVGGRIGNGPFGASSPGVEQSTQN 148

[Close]

BLAST of Lsi10G006320.1 vs. NCBI nr
Match: gi|147835464|emb|CAN61119.1| (hypothetical protein VITISV_022570 [Vitis vinifera])

HSP 1 Score: 83.2 bits (204), Expect = 3.5e-13
Identity = 56/128 (43.75%), Postives = 67/128 (52.34%), Query Frame = 1


Query: 26  TSLPEIGSSGWKSTTRRMVSDAPPAALENLEDRVPPTSSRTHNHIRSPRG-------TTS 85
           T+  ++G S WKS  RR+VSDAP    EN EDRVPPT  RT+N IRSP          TS
Sbjct: 29  TAQSKVGFSVWKSNVRRVVSDAPSTTPENPEDRVPPTPGRTYNRIRSPSKESRQNGFVTS 88

Query: 86  GQ-------------------WNN----VARAGRRVSTGGRTKNGSVEGLPQASNNQLRT 124
           G+                   W       AR G RV   G T+NGS+ G P+ASN++LR 
Sbjct: 89  GKGFTLRAGHGGPSPEPVDCRWTARAAPAARVGHRVPVRGWTRNGSLGGFPRASNSRLRI 148

[Close]

BLAST of Lsi10G006320.1 vs. NCBI nr
Match: gi|920691571|gb|KOM34796.1| (hypothetical protein LR48_Vigan02g094600 [Vigna angularis])

HSP 1 Score: 81.6 bits (200), Expect = 1.0e-12
Identity = 40/57 (70.18%), Postives = 45/57 (78.95%), Query Frame = 1


Query: 22  VDDPTSLPEIGSSGWKSTTRRMVSDAPPAALENLEDRVPPTSSRTHNHIRSPRGTTS 79
           V+   + PE+GSSGWKST RR+VS APPAALEN EDRVPPT  RTHN IRSP  TT+
Sbjct: 82  VNGTCTWPEVGSSGWKSTARRVVSGAPPAALENPEDRVPPTPGRTHNRIRSPSETTA 138

[Close]

BLAST of Lsi10G006320.1 vs. NCBI nr
Match: gi|674913387|emb|CDY19789.1| (BnaA09g04420D [Brassica napus])

HSP 1 Score: 74.7 bits (182), Expect = 1.3e-10
Identity = 37/49 (75.51%), Postives = 40/49 (81.63%), Query Frame = 1


Query: 26  TSLPEIGSSGWKSTTRRMVSDAPPAALENLEDRVPPTSSRTHNHIRSPR 75
           T+ PE+GSSGWKST RR+VS A PAALEN EDRVP T  RTHN IRSPR
Sbjct: 301 TAQPEVGSSGWKSTARRVVSGAFPAALENPEDRVPLTPGRTHNRIRSPR 349

The following BLAST results are available for this feature:

BLAST of Lsi10G006320.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi10G006320.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0P1A454_9STRA	7.4e-18	52.10	Atp synthase subunit beta OS=Plasmopara halstedii PE=4 SV=1	[more]
A0A151QL08_CAJCA	7.7e-15	57.61	Uncharacterized protein OS=Cajanus cajan GN=KK1_049375 PE=4 SV=1	[more]
A5B939_VITVI	2.5e-13	43.75	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022570 PE=4 SV=1	[more]
A0A0L9TWC3_PHAAN	7.2e-13	70.18	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g094600 PE=4 SV=1	[more]
A0A0D3BAS1_BRAOL	9.4e-13	52.17	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]

BLAST of Lsi10G006320.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi10G006320.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|953504095\|emb\|CEG35068.1\|	1.1e-17	52.10	atp synthase subunit beta [Plasmopara halstedii]	[more]
gi\|1012316387\|gb\|KYP30978.1\|	1.1e-14	57.61	hypothetical protein KK1_049375 [Cajanus cajan]	[more]
gi\|147835464\|emb\|CAN61119.1\|	3.5e-13	43.75	hypothetical protein VITISV_022570 [Vitis vinifera]	[more]
gi\|920691571\|gb\|KOM34796.1\|	1.0e-12	70.18	hypothetical protein LR48_Vigan02g094600 [Vigna angularis]	[more]
gi\|674913387\|emb\|CDY19789.1\|	1.3e-10	75.51	BnaA09g04420D [Brassica napus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi10G006320	Lsi10G006320	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi10G006320.1.CDS.1	Lsi10G006320.1.CDS.1	CDS
Lsi10G006320.1.CDS.2	Lsi10G006320.1.CDS.2	CDS
Lsi10G006320.1.CDS.3	Lsi10G006320.1.CDS.3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi10G006320.1	Lsi10G006320.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33187	FAMILY NOT NAMED	coord: 28..73 score: 1.0
None	No IPR available	PANTHER	PTHR33187:SF2	SUBFAMILY NOT NAMED	coord: 28..73 score: 1.0