Lsi10G006320 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi10G006320
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionBnaC08g47040D protein
Locationchr10 : 8830009 .. 8831718 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGAGTCAAGAAATACTTCGACTTCCATTTGGCCTGAGCTTGTGGATACTCACGACAGAGTCGACGATCCGACCTCATTGGTAAGTGAAGTGAAAATTTAGGAGTTGGAGTTTTCTCACTGTATTTGTATAGGTTTGTGTCAAAAGTGTGTGTTCAATCTCAAGTGAAGATAATCCTCCAAGGTTTTTAGAGGATGGCACTTGCATTTCCAGACATTTAACTTCTGGATTGTAATTGTGACTGTGAGGTACTCAATAGTGTATGAATATAGTGTCTTGATCTATTACAATATACCTTTTTTCTCCCTCTTTTCCTATTTAAGTTCTAGTAACATTCATTTTAACGTTAAAAATTAACTCTGTTATACTTGAATCATATGAATACAAGTAGATAATTGAACTACTTTTACCCGAAAATACGAGGACTAACGATATATTTTGTCGTTTACTCTTGCATCCCTCTTGAATGTATTGCCTGTCGTCTTCTTTTGCGAATTTCTCGAACGAGTTTCACCATTTTCCTTGTTCTTTCTTTCTCCATTGTCGGAAAGTGTTTGCTTTTGGCCTTTGCACTTATAGGATCAAAAGTGCTTTGTTTTGAGGATAGGGTGCAGATTGACTGGAAACAAGAAGTAGAAGCCATTCAAGTCAAATCAGAGATGACAAAGTAATGTGATTCTTGTTAAGTCTGTATGAGTGCTGTGTCATCTCATCTCATCTCATATATGTTGAGTGCAAATCCTGGGCTCTATGTCCTAGGTGGGTCATTTCACTAATAGGTCAGGTTGTGTAGATCGATATTAAAATATAATTAACCATATTCTTCGTCAAATCAGCTTCAATTTGATAGCGACACTATTGACCTCTTCTCAAAGTGGTCGGTTGAAGGTTCCAATCAAAAAATTGACGGTGGATTTTGTGTTATGTTTGAAATTAAATATTTATTTTCTCGATTGGTTTTGTTTTCATGACTTTAGTTAGTTTCATTGAATATTTTTTAATTGGTATTAATTAAAGTAGTAAAGTCAAAGTTAAATAGTAACTTTTTTTTTGCTAAGGCCACAGTTTTTTTTTTTCAAGAGGGTAGCATTTGCCATTTTTCGTCGATCTTTCAGGGGTATCATTGATCATTTTTAAAACGTTCAATTCTCATTTTAATTTTTGGATAAATTAGCCAGAGATTGTTATAAGTGGCAGCTGACGACAACGTTAGGGATTTTGGAGACGTCAGTGGGGGCCTCGAGAATAGTTATCTTTTCTGTTTAACAACCTGCCCATCCTGGAAACGGCTCAGCCGGAGATAGGGTCCAGTGGCTGGAAGAGCACTACACGTCGCATGGTGTCTGATGCTCCCCCGGCGGCCCTTGAAAATCTGGAGGACCGAGTGCCTCCCACGTCCAGTCGTACTCATAACCACATCAGGTCTCCAAGGGGAACAACCTCTGGTCAATGGAACAATGTAGGTAAGGGAAGTTAGCAAAATGGATCTTTAACCTTGGGAAAAGGATTGGCTCTGAGGGCTGGGCACGGGGTTCCAGTCCCAAACTTATCGGTTGTCGGTGGATTGCTTGAGTTGCTCCCGCAGCGAGAGCGGGTCGCCGCGTGTCAACCGGGGGACGGACTAAGAACGGCTCCGTCGAAGGCCTTCCCCAGGCATCAAACAATCAACTCAGAACTGGTATGGACAAGGGGAATCTGACTCGTTAA

mRNA sequence

ATGGCTGAGTCAAGAAATACTTCGACTTCCATTTGGCCTGAGCTTGTGGATACTCACGACAGAGTCGACGATCCGACCTCATTGCCGGAGATAGGGTCCAGTGGCTGGAAGAGCACTACACGTCGCATGGTGTCTGATGCTCCCCCGGCGGCCCTTGAAAATCTGGAGGACCGAGTGCCTCCCACGTCCAGTCGTACTCATAACCACATCAGGTCTCCAAGGGGAACAACCTCTGGTCAATGGAACAATGTAGCGAGAGCGGGTCGCCGCGTGTCAACCGGGGGACGGACTAAGAACGGCTCCGTCGAAGGCCTTCCCCAGGCATCAAACAATCAACTCAGAACTGGTATGGACAAGGGGAATCTGACTCGTTAA

Coding sequence (CDS)

ATGGCTGAGTCAAGAAATACTTCGACTTCCATTTGGCCTGAGCTTGTGGATACTCACGACAGAGTCGACGATCCGACCTCATTGCCGGAGATAGGGTCCAGTGGCTGGAAGAGCACTACACGTCGCATGGTGTCTGATGCTCCCCCGGCGGCCCTTGAAAATCTGGAGGACCGAGTGCCTCCCACGTCCAGTCGTACTCATAACCACATCAGGTCTCCAAGGGGAACAACCTCTGGTCAATGGAACAATGTAGCGAGAGCGGGTCGCCGCGTGTCAACCGGGGGACGGACTAAGAACGGCTCCGTCGAAGGCCTTCCCCAGGCATCAAACAATCAACTCAGAACTGGTATGGACAAGGGGAATCTGACTCGTTAA

Protein sequence

MAESRNTSTSIWPELVDTHDRVDDPTSLPEIGSSGWKSTTRRMVSDAPPAALENLEDRVPPTSSRTHNHIRSPRGTTSGQWNNVARAGRRVSTGGRTKNGSVEGLPQASNNQLRTGMDKGNLTR
Homology
[Close]
BLAST of Lsi10G006320 vs. TrEMBL
Match: A0A0P1A454_9STRA (Atp synthase subunit beta OS=Plasmopara halstedii PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 7.4e-18
Identity = 62/119 (52.10%), Postives = 71/119 (59.66%), Query Frame = 1 

Query: 26  TSLPEIGSSGWKSTTRRMVSDAPPAALENLEDRVPPT----SSRTHNHIRSPRG------ 85
           T+  E+GSSGWKST RR VS APPAALEN EDRVPPT     SR +  + S +G      
Sbjct: 208 TTQSEVGSSGWKSTARRAVSGAPPAALENPEDRVPPTPGRKGSRQNGSVTSGKGLALRAG 267

Query: 86  -------TTSGQWN----NVARAGRRVSTGGRTKNGSVEGLPQASNNQLRTGMDKGNLT 124
                      +W     + ARAG RV  GGRT NG   GLP+ASN+QLRTG DKGN T
Sbjct: 268 HGGPCPEPVGCRWTARAASAARAGHRVPAGGRTGNGLFGGLPRASNSQLRTGTDKGNPT 326

[Close]
BLAST of Lsi10G006320 vs. TrEMBL
Match: A0A151QL08_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_049375 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 7.7e-15
Identity = 53/92 (57.61%), Postives = 59/92 (64.13%), Query Frame = 1 

Query: 29  PEIGSSGWKSTTRRMVSDAPPAALENLEDRVPPTSSRTHNHIRSPRGTTSG-QWN----N 88
           PE+GSSGWKS  RR+VS APPA LEN EDRVPPT  RTHN IRSP     G +W      
Sbjct: 57  PEVGSSGWKSIARRVVSGAPPATLENPEDRVPPTPGRTHNRIRSPSPEPVGCRWTARAAP 116

Query: 89  VARAGRRVSTGGRTKNG----SVEGLPQASNN 112
            ARAGRRV  GGR  NG    S  G+ Q++ N
Sbjct: 117 AARAGRRVPVGGRIGNGPFGASSPGVEQSTQN 148

[Close]
BLAST of Lsi10G006320 vs. TrEMBL
Match: A5B939_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022570 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.5e-13
Identity = 56/128 (43.75%), Postives = 67/128 (52.34%), Query Frame = 1 

Query: 26  TSLPEIGSSGWKSTTRRMVSDAPPAALENLEDRVPPTSSRTHNHIRSPRG-------TTS 85
           T+  ++G S WKS  RR+VSDAP    EN EDRVPPT  RT+N IRSP          TS
Sbjct: 29  TAQSKVGFSVWKSNVRRVVSDAPSTTPENPEDRVPPTPGRTYNRIRSPSKESRQNGFVTS 88

Query: 86  GQ-------------------WNN----VARAGRRVSTGGRTKNGSVEGLPQASNNQLRT 124
           G+                   W       AR G RV   G T+NGS+ G P+ASN++LR 
Sbjct: 89  GKGFTLRAGHGGPSPEPVDCRWTARAAPAARVGHRVPVRGWTRNGSLGGFPRASNSRLRI 148

[Close]
BLAST of Lsi10G006320 vs. TrEMBL
Match: A0A0L9TWC3_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g094600 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 7.2e-13
Identity = 40/57 (70.18%), Postives = 45/57 (78.95%), Query Frame = 1 

Query: 22  VDDPTSLPEIGSSGWKSTTRRMVSDAPPAALENLEDRVPPTSSRTHNHIRSPRGTTS 79
           V+   + PE+GSSGWKST RR+VS APPAALEN EDRVPPT  RTHN IRSP  TT+
Sbjct: 82  VNGTCTWPEVGSSGWKSTARRVVSGAPPAALENPEDRVPPTPGRTHNRIRSPSETTA 138

[Close]
BLAST of Lsi10G006320 vs. TrEMBL
Match: A0A0D3BAS1_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 9.4e-13
Identity = 48/92 (52.17%), Postives = 57/92 (61.96%), Query Frame = 1 

Query: 4   SRNTSTSIWPELVDTHDRVDDPTSLPEIGSSGWKSTTRRMVSDAPPAALENLEDRVPPTS 63
           SRN   S+ P L          T+ PE+GSSGWKST RR+VS A PAALEN EDRVP T 
Sbjct: 520 SRNPLRSVLPTL---------ETAQPEVGSSGWKSTARRVVSGAFPAALENPEDRVPLTP 579

Query: 64  SRTHNHIRSPRGTTSGQWNNVARAGRRVSTGG 96
            RTHN IRSPR   S +W  +   G+R+ + G
Sbjct: 580 GRTHNRIRSPRQGKSAKW--IRNFGKRIGSEG 600

[Close]
BLAST of Lsi10G006320 vs. NCBI nr
Match: gi|953504095|emb|CEG35068.1| (atp synthase subunit beta [Plasmopara halstedii])

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-17
Identity = 62/119 (52.10%), Postives = 71/119 (59.66%), Query Frame = 1 

Query: 26  TSLPEIGSSGWKSTTRRMVSDAPPAALENLEDRVPPT----SSRTHNHIRSPRG------ 85
           T+  E+GSSGWKST RR VS APPAALEN EDRVPPT     SR +  + S +G      
Sbjct: 208 TTQSEVGSSGWKSTARRAVSGAPPAALENPEDRVPPTPGRKGSRQNGSVTSGKGLALRAG 267

Query: 86  -------TTSGQWN----NVARAGRRVSTGGRTKNGSVEGLPQASNNQLRTGMDKGNLT 124
                      +W     + ARAG RV  GGRT NG   GLP+ASN+QLRTG DKGN T
Sbjct: 268 HGGPCPEPVGCRWTARAASAARAGHRVPAGGRTGNGLFGGLPRASNSQLRTGTDKGNPT 326

[Close]
BLAST of Lsi10G006320 vs. NCBI nr
Match: gi|1012316387|gb|KYP30978.1| (hypothetical protein KK1_049375 [Cajanus cajan])

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-14
Identity = 53/92 (57.61%), Postives = 59/92 (64.13%), Query Frame = 1 

Query: 29  PEIGSSGWKSTTRRMVSDAPPAALENLEDRVPPTSSRTHNHIRSPRGTTSG-QWN----N 88
           PE+GSSGWKS  RR+VS APPA LEN EDRVPPT  RTHN IRSP     G +W      
Sbjct: 57  PEVGSSGWKSIARRVVSGAPPATLENPEDRVPPTPGRTHNRIRSPSPEPVGCRWTARAAP 116

Query: 89  VARAGRRVSTGGRTKNG----SVEGLPQASNN 112
            ARAGRRV  GGR  NG    S  G+ Q++ N
Sbjct: 117 AARAGRRVPVGGRIGNGPFGASSPGVEQSTQN 148

[Close]
BLAST of Lsi10G006320 vs. NCBI nr
Match: gi|147835464|emb|CAN61119.1| (hypothetical protein VITISV_022570 [Vitis vinifera])

HSP 1 Score: 83.2 bits (204), Expect = 3.5e-13
Identity = 56/128 (43.75%), Postives = 67/128 (52.34%), Query Frame = 1 

Query: 26  TSLPEIGSSGWKSTTRRMVSDAPPAALENLEDRVPPTSSRTHNHIRSPRG-------TTS 85
           T+  ++G S WKS  RR+VSDAP    EN EDRVPPT  RT+N IRSP          TS
Sbjct: 29  TAQSKVGFSVWKSNVRRVVSDAPSTTPENPEDRVPPTPGRTYNRIRSPSKESRQNGFVTS 88

Query: 86  GQ-------------------WNN----VARAGRRVSTGGRTKNGSVEGLPQASNNQLRT 124
           G+                   W       AR G RV   G T+NGS+ G P+ASN++LR 
Sbjct: 89  GKGFTLRAGHGGPSPEPVDCRWTARAAPAARVGHRVPVRGWTRNGSLGGFPRASNSRLRI 148

[Close]
BLAST of Lsi10G006320 vs. NCBI nr
Match: gi|920691571|gb|KOM34796.1| (hypothetical protein LR48_Vigan02g094600 [Vigna angularis])

HSP 1 Score: 81.6 bits (200), Expect = 1.0e-12
Identity = 40/57 (70.18%), Postives = 45/57 (78.95%), Query Frame = 1 

Query: 22  VDDPTSLPEIGSSGWKSTTRRMVSDAPPAALENLEDRVPPTSSRTHNHIRSPRGTTS 79
           V+   + PE+GSSGWKST RR+VS APPAALEN EDRVPPT  RTHN IRSP  TT+
Sbjct: 82  VNGTCTWPEVGSSGWKSTARRVVSGAPPAALENPEDRVPPTPGRTHNRIRSPSETTA 138

[Close]
BLAST of Lsi10G006320 vs. NCBI nr
Match: gi|674913387|emb|CDY19789.1| (BnaA09g04420D [Brassica napus])

HSP 1 Score: 74.7 bits (182), Expect = 1.3e-10
Identity = 37/49 (75.51%), Postives = 40/49 (81.63%), Query Frame = 1 

Query: 26  TSLPEIGSSGWKSTTRRMVSDAPPAALENLEDRVPPTSSRTHNHIRSPR 75
           T+ PE+GSSGWKST RR+VS A PAALEN EDRVP T  RTHN IRSPR
Sbjct: 301 TAQPEVGSSGWKSTARRVVSGAFPAALENPEDRVPLTPGRTHNRIRSPR 349

The following BLAST results are available for this feature:
BLAST of Lsi10G006320 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi10G006320 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0P1A454_9STRA7.4e-1852.10Atp synthase subunit beta OS=Plasmopara halstedii PE=4 SV=1[more]
A0A151QL08_CAJCA7.7e-1557.61Uncharacterized protein OS=Cajanus cajan GN=KK1_049375 PE=4 SV=1[more]
A5B939_VITVI2.5e-1343.75Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022570 PE=4 SV=1[more]
A0A0L9TWC3_PHAAN7.2e-1370.18Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g094600 PE=4 SV=1[more]
A0A0D3BAS1_BRAOL9.4e-1352.17Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
BLAST of Lsi10G006320 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi10G006320 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|953504095|emb|CEG35068.1|1.1e-1752.10atp synthase subunit beta [Plasmopara halstedii][more]
gi|1012316387|gb|KYP30978.1|1.1e-1457.61hypothetical protein KK1_049375 [Cajanus cajan][more]
gi|147835464|emb|CAN61119.1|3.5e-1343.75hypothetical protein VITISV_022570 [Vitis vinifera][more]
gi|920691571|gb|KOM34796.1|1.0e-1270.18hypothetical protein LR48_Vigan02g094600 [Vigna angularis][more]
gi|674913387|emb|CDY19789.1|1.3e-1075.51BnaA09g04420D [Brassica napus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G006320.1Lsi10G006320.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33187FAMILY NOT NAMEDcoord: 28..73
score: 1.0
NoneNo IPR availablePANTHERPTHR33187:SF2SUBFAMILY NOT NAMEDcoord: 28..73
score: 1.0

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi10G006320Cucumber (Chinese Long) v3cuclsiB106
Lsi10G006320Watermelon (97103) v2lsiwmbB047
Lsi10G006320Wax gourdlsiwgoB072
Lsi10G006320Cucumber (Gy14) v1cgylsiB594
Lsi10G006320Cucurbita maxima (Rimu)cmalsiB508
Lsi10G006320Cucurbita moschata (Rifu)cmolsiB492
Lsi10G006320Cucurbita moschata (Rifu)cmolsiB531
Lsi10G006320Cucurbita pepo (Zucchini)cpelsiB222
Lsi10G006320Wild cucumber (PI 183967)cpilsiB091
Lsi10G006320Cucumber (Chinese Long) v2culsiB093
Lsi10G006320Melon (DHL92) v3.5.1lsimeB054
Lsi10G006320Watermelon (Charleston Gray)lsiwcgB048
Lsi10G006320Watermelon (97103) v1lsiwmB070
Lsi10G006320Cucumber (Gy14) v2cgyblsiB086
Lsi10G006320Melon (DHL92) v3.6.1lsimedB060
Lsi10G006320Silver-seed gourdcarlsiB906
Lsi10G006320Silver-seed gourdcarlsiB965