Lsi10G004670.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi10G004670.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Nuclear pore complex protein Nup188b
Location	chr10 : 6740217 .. 6753851 (+)
Sequence length	300

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTAGATCTGTGTGGATTGTTTATGGTTGTTGTTTCACAATTTGAGATCAGGATTCTGTAAATGTCAATGAACAGATTTTCGTTTAGAAAAAACTTCACCTTGAGGTTCTTTCATGTTATGGTTGTTTATCTCGGAAATGAAAATGAAAAGGCATATGAATGCTTCAATATTTTCTTGTTAAGAATTACCTTTTTTTTTTCAATACACTTTTAAGGATTTAGGTTTGGTTACATTTTTTTTTGTTGGTTGCATTTGAAAATTTAGTCCATGTCATAAGTTTGGAAAAATATTATAATTCTCAAGTTTGGAAAAATTGGCTTTTTGGTCCATGTCATAAGTTGCCAGCTACCAGAAACTTGATGTGGATTGTTTAAAAATTTAATAAACATACTTTTAATTTTTTTAAAATACGAAATAATTTTAATATCATTTGTTTCTCTCTCTCCCATATTTCTCCCACTCCTCAAGAAATAAATTTCAAATTGCATGAACTGAAAATAAAAATATCAAACTATGCTATATTAAAAAAAGGAAAAGTTATATACTCGTATAACATAAGCGTCCCTTCAAAAACAAAATTTTTTATGTGACGTGCTTGTATTAGAGCCCTTCCCATAAGGGTAAGTCTTTCACATACAAATTTGTGATTCAGCTTATTGTCTTCTCTGCAAGAGTTATCTTGAAATGGAGCTCCATGTTAATATAGGATTGTAAATAAACGAGGAAATTTAGGGAAGTTGATTCCTTGTGCTATCCTATGTGGACACAAACTATGCTAATTTTGCTTCTCATTTTTGTAGGGTCACAAACAAGTGCTCTAAGTCGAATGGAAATGCGGATTTTCACATTGAGTGTTGTTGCCTTCTGGAATTAGCGTAACTTAATGGTGTTTGATATGACCAAGAAGATGCAGTTTGACCCTATCTTGTGGGCTTTGAAGTTTGTTAAGGGCATGAATACATATGTTGCTCAGAGAATATCGAGTTTGTCAGCCCCAAATGCCCTCTCTTTAGACTATCGATGATGTTTGCATCAGCTGCTGGAAGTCCCCATAGGGTAACTTGTACCGACTTAATTTTGATGCTTCCTTCACCATGGGAGTGGTGGGCTTTAGAGCCATTGCTCGTAATTCTAATGGTAAACCTATGATTTCGATATAAAAAGCTCTAAAGTTTATCAGTACTGTTGAGCTCGCTGAGGCTGATACTTTCATGGATGCAATTATTACGTTTGAGGAAGCAGAGATTTGTCACTTATGGGTTGAAATAGATTCGATGATTCTCTTAAACTTAATTGAAGATAGGAACTGTTTCGACAATGAATTCCAAGCCTTTGTTGATGACATTCGAGCTTTTCATGGACAATACATTGTTTTAGGCTTCTCTTTTGGTCTACAAAACTGTAATTTCATTGCTCGCATTTTGGCATGTAATGTACGGTGAACCACCGTCTTTGGTGTTTGGCTTGAAGACCACCCCCCATAGATCGATGTTGTGTATACTGATTTGATATCTCGTTAGTTATTCTTCTTCTCTGTATTACTCCAAAAAAAAAAAAAAAAACTTAGATTATATCAATTATAACTCTAACTAGACAAGTGTAGGTTAAAGGACTAACTCTAGTTTTATGTATTATGGATTTCATTTCAATTAAGTCTATATACTTTCAAATGTCCAATTTGAGTCATTAAGTTTATACACCTATGCTGACATGGGCGATATTGCACATGCCCCAAGCTGATGGCAAGCTACAGATTCTATAAATAGTCTCATTCTAAGTGTTTAACCGAACTAAACACTTTGTAAAGCTACTTGTAGTTACTCACTACACATTAAGGTTGAATGTAAACTATTATTAACTAAAAAGAATACTTGGGTTATACCCATCTTCATGTAGCACACTTAAAAACATGTCATGTGGTAAAAAAAAATTGATTTCCTAAAAAAAAAAAATCAAATTATTATTCTATTACCATGTCAATGGGCTACATGGAGACAAGTGTAACAAAGACTACACCTAATAACTACTCTATTAATTAATTCACGAACATGTTGCAGCCCTGTTGCCAAGATTATGAATTGGTAAACGTGACATCAATAATATTTGTCACAATAAAGGCTTTTTTTAAATACAACAATAGTAGAGTAAGTATCAAACCTCCAACCTCTAGGGAGAACGACCATGCCAATTATTAGTGAGCTAAGCTCACTTTGGCGGTCACAATAAAGATTAAACTGTTACAAATTGTAGAATATATAGACCAATGATTACTTATTAAAGTTTAAAAATTAAATTGCTACATTAAAAATGAGAATTTATTACAAATAAAAAAAATAACATTATTATTAATTAAAGTTCAAACATTAAATTATTATTTTCATAAAGTCGAGGAAACATACTATGAAAAGTTCACATAATATTTTGAAAATAACCTAAACATTTTGGAATTGACGCACCGCATTAGCTAGCGCGAAAGCCAAACGCATTACAAATTTCTCCGGTACTAGCAACTCACTTCCTCTTCTCCTGAGCCGCTGCGTGGCAATAGCCGAAGCCCTCTGAAACTCAGAGGCGCGAAAGAAGAGAGAATCACACAGACATTTCCCGCTTTCCTTGCTAGGGTTCAGCTCCCAAGCTCTCGCGGGGACATCTCGCATGGCTACCTCCACTTCCGTCGACTCGTCTCTCTGGTGGGATCCTTTCCGTCCACTTCTTACTGAGCTTGAAAATGTCTCCCTCTCTTCTGCAGAACTTCCTCCTAAACTGGTAAAATTCACCCCCTCCATATCTTACGCACCAGTGTTTCAGTGCACATTTAATTGTGGCAGTGTCTTTTCAGATGAAAAAGATGGACGACAACCATGCTTGGTTCGTGGACACCGTTTCACTCTTCAAGAAACCGAACGAGAAATCAAGGGTGGCTTTAGATTCTCCGGAAGTCAAAATAGGATCCCACACGCTATCTATACAATCTGAACTTAAAGCTAAAGCTCTCAAGTTGAGCTCTTATCTGGTCGGCCTGCATGCTTTGTATGCTTTAGTTGTTATATTCGAAAATTTGAATGTTTTCCATTGCATTGTTTATGTCACAATACTATATTTGTTGAGCTACTAATTCATTTTCTTTAGTTACTCCAGTTGTATGCACGACAATATGAGAATCCTCCTACTATTATTTTGACAATATACGAACTTCTCATTTGAAAATAGATGAAATTGTTCACAAAGAAATGAAATAGTTGAAAGGATACTCCTATCATTGCTTTAAAAAGCCCTCCTAGGCGCAGGTATGGGCTTCGCCTAGGTGCGCATTAGACACACACCTTTAATGAAGCCCCAAGGCCCAAGGCTTTAGGCCCCGGGGCTTTTTCATTATTTAAGAAAAACCCAGTAATAATTAGAGTTTTCCTTCTTTATTAACTAAAAAAATATTTTACTAAGTCTATATGCAAAATCCCTTGTGTTTGGGGTGGTATTCTTTTTTCTTCGTATTTTCACGTTAACTATGCTTTCTCTTTTTTATGTAGTGCTTTTATGTATAGTGTGCCTCACAAAAAAATCGACCTTTTTTTTCTTTTTTCTTTTTGTGCATTGTGCTTAAACCCCAGAAAACTATTGTGCTCCTTGAGCTTTAAAAATACCGACTCATATAGGGAGTGAGAAAGGACAAAGTAAAGGAAAAAAGGGAAAATAAGGAAAGCACAAAGGGAATATCACTCCAATTAAAACAAGAAATACAATAGACTGTTAAAAAAAATAACACGAGAATTTATAATTATTTGACAAAATTGGGTTTTCATTTACGAGGTATAATATGAACGAAAAGGGTGAGCTTCCAAAATATTTATTGGACATGTTACTTTCTTTTCTCCTTGTTAAAAATATAATATTATCATTTTATTTATTGATGATTTACGTTTATATGTCCGTTTCAGTGTTTGGATGAGGTCCAATCGTACATTCTCGCTGCAAGAACCATTGAACATGAGAATGTAGTTGAAAACTCCCCATTTCAGGAACTTCTTCACATGGTTAGTAGCTTTGTCCAATGATTCTTATATGTATCTTTAATGGACACCTTTCAAGAGAGGTATTACATTTTGTTCTGTGGTGAAGATTTAATTTTTGATCATATGTTAAGTCTACGATGATAGTAAGTAGCAGGATGAACGATTAAGTCTGGTGGTGAAGATATATTCTTGAAGTTCTATGCTTAAGTACTTTTTGATTAATGTTTTATGAGGTCAAGTCACTAGAGCTCATATAGTTTTTTATACAATGGAGGTAATGAACCACCATAGGTTTACCCAATGGTGATTGTGACAGGCAACAAAATAGGGTTTAGAGGAAACGAGTTCGAACAATGGCATCTAGCTACCTAAGATTTAAAATTTTTCAATTTTTCTTGGCAACCAAATGTAGTAGGGACAACAGTTTTTCTTTGAGATCAGTTGAGGTGTCAAGTGTGTGCAAGTTAGCTTAGACACTCACCAATATTAAAAAAAGCAATTCGTCAAAATGTCTTATTAACCGAAAAAAAGCGAGTTAGCTTTGACACTCATCAATGTCTTAATACTTTTTTGATATTTAGTTTCATTGTAATCGAGTTTTTGCTCTTTTCATTATATCAATGAAAAATTTTCGTTTCCGTTTAAAAAAAAACCGAAGAAGAAATTCGATTAGCAGCTACTGAATTTCAAGAAGTTGGTTGTTGGAGGCCTTAGAATTTAGGGTGGCTTTGTTCCCAAGTTTTCATAGGTGGAGGTTGGATTTTTCTAATTTGTTTGCTCCTTTCCATGCTCTTGGTGCCCTCTTTCTATTTGGAGTTGTCTGGTTCTAAAGCATTATGGTTCTCCAAATATTCTAGTCGGATTGTTCCTCTATTGTGGCTCTGGTTTTGTGGATTGTTGGTTATTAACTGTTTAGTAGAAGTTGAAGCTGACTTTCTCTCCGAAGTGTTGTCCTTGTCACATGGTTACTTGTTCACAGAGTTTCAATTTTAGTGGTGTTTGGAATTTTCGTTTAAAGAACCATTTTGTTCCATCTTAGGATGCATTTGTTTGTATTTGCTTTAATTTTCTGGATAAATCCAGCTTTGGGCCATTTTTTGTTGTATTATCTTTCTTATTTTGTCTCATTGTACTCGAGGGTTAGTCTCTTTTCATTTCATTAATGAAAAGCTTTGTTTCCATTTCAAAAAAAAAAAAAAACTTGGGAGAAATAAACCTTCACGGCTTGATGGAGTTCTTACAAGAGGGCTTGGAACATTTTTTTAAAAAGGAAACAACTTTTCATTGATGGAATGAACAGAGACTAACGCTCAAAATATAATGGAACAAAATAAAACAAAAATATAGTGAGTACAAACAAAACGGCCAAATACACCCAATAAGAGAAGACAATAACTCTAATCGATCTCAAACTAAAATAAAAAATCAACTAAACTTGATATGCTCAAAGAATTCTTCAAAAAAGAACACCTCAAATAAAAAAAAACTCTGAACAACTGAGGAAAAACTTCTAAAGAGCCCAAACAAACTGGAAACTATTGGCCCAAAATGAGCTTCTGAAACCCATTGAAAGTGAAGAATGGTGAAACAACGCACAAAAATGCAGCACGCACTGAAAGACTTCTCTGAAAGGCTTCAAAGTAAACTTCAACCTAGGAGCTTCTGATGACAAAAAGTTGAAGGAAAAAAAGTCAACTTAAATTTATATCCCTAATCCTTAGTCAAACCTTAATTTGAGGTGACTTAGGTCTGATTTCTATCATCTGTAAACCACACGCCTCAATTAAGGAATGAAATTTGGAAGGAACTGAGGAAGGAATTAAGGGATACTTTGCCGCCCATGCTACTGAAAGTAAAACTTCATCTGTAACCTTATCATCATCAATTAAAAAGAGATTATCAAAAGCTCTTGTAAGAGAGTCTTCAATAGGAAGGTCATCTTACTGAGTATTTGCAATTTGCTCTTCAACCTCCTCACTACTCATACTAACATTAGATGCAAGATCAAAAACCCCATCATGAATAGAATGAGTGGAGGTTGATGCCTTGGTAGTGGAAGAGGACAAAACACCTTTGGTAAACATAACATTTGATCCTGGAATGAACTTTGTATATGTGTACGGATCTGAAGGAAGTGAAGGAGGCTGGGATAGCTTTGGTGATGAAGTAATGAGTCGAGTACAAGCTTCCTCCAAAATATCTGCGCTAATTTATGATTTTCCAAGGAAACTAAAGCGAGTAATCTTTCTAGTATAAAAGAAAGGGTGGCGTTCAATAAGCCGAGAATTCAAAATAGGGCCTTGAATTGTAGAGTAGAAACATGGTTGTGAAGATTGACCACAATCTGAAGAAGAGCGAATAGCTTGAAGGTCATCATGTAAATAGGATAGGAGCCAACTGAATTCTGCAAAAGAACATTCTCATAAGAAGGGTTTGGAACAACCATGTTTCCCTTGTCGGACACAACAAGCACGCTAAAGCCTTCATCAATCATTACTTGAGCTATTCTCTTAAGATCCACTGCATTTGAGAAACTGAAGAATGATAAATCTCCATGACCAGTGCGAGGTGGATTCAAAGGGCAAATATCCCAAAATGAAGCGAAAAACTGCCATACTTATATGTTATCTCAATCTCAGCAGGTATAAATCCACATAAAATTTTCTCCACTTCAATTATAGTAGTTGTACAATCAATTAGATTAAGTGTCTGAGAGGAGATATTAACCAAGCCTCCAAAATGCTGACCAATTGCTTCAAAGCAAGAACGTTTCCAGTAAGGCAATGGTAAATTCTTCATTGAAATCGAACCATCATAACCTTCAATAAATTTTGGATGGGAATGTTCTTCATGAGACCATTTTTCAGTTTTTAGGTGATAGTCACCAATTAGTTTCCATTTCCCATCAAAATCCAAATCAGGAAAATCATCCCTTAGATGTAATAATGCTTTATCGGCCATAAATGTGTTAATAGATACCTTGGATTGAAAATAAACTTCTAAAGCGTCATGAATGTCCAACCAAGAATTATGAGCTAACAATCTTGAAATCACTAAAAGAGAACTGAAACTCATATCCACTACCTCTTTTTCTTTCCTCACCCAATAGGTGGAAGCATCTGAATTTTGCTTAAGCAACCCATTTGCAAAAATGGCATTGAGATGATTATTTTTACCCTTCTTTGGGGACAATGCTTCTTCTTCCTCATCAAGCTTTGAAGGAGTGACGAGAGAGTGTTGCAAATTCTCTACTTTTGGAAGAAATTCTTGAATCATATCCCAAAAAACAAACCAACCTTTTTTTTTTCCAACCCCAACTGCAACAAGTAATCGCTTTCTACCACCAGTAGGTGGCCATACAACACACTCAAGTTTCCAACCGATGACGGATTTAAATTTAACCAAAAGGATAGTGCCGGAATCATCCCTAAATTTTCTCCCAAAAAAGTATGGACTAGAATTTGCAATATTTCAGCCAAAGAGTCTTCAATCCAACTCAAATGAGAGAAAGTGAGAGGAATTGACATTTTATTTTCTAAGTCTTCAACAAAACCTAAATCATCTTCAAACCAAGCCTTGAAGTAAATATTGCTTATACAACAACTCAAAGAATCCACGAGACTCAAAATCGAGTTAACTGTGGGAGAGTCTGGCCAACAAAGAGGAGGGAGGACAGAAGCAAGCAGGAACCAAAGAAAAGTAAGGAAAAATGAGGAGAATAGGGCGAAGGCGACATAGGGGAAAGATGGAGAAGGAAAGGTTAGAGCGAAGGAAGAAGAAAGAAGAGAAAAAAGAAGAAGAAAGAAAAAAGGGGGACCTGAACGAAGAAGACAGGCGGAAACGGAGAAGAGTTAACCCGCCTACGTTGATTGGAAGATTGGACGGTCAGAAATTGACAACGGAGGACGAAGGATGGATGGAAAGAGGGAGACATAGAAGCTACGGGTTTATGGCAGCTGGGTTAAAAATGCAGATAAAAACGACTATGGTTTGGAGAGAGGTCGAGGCGAACGTCGTCGGGGGGATGACCGGAAAGAAACGGAGAGGTCTGAGATAGACGACAGCCGGAGAAAGAACAGTAGGACGACGAAAGTGGGACGACTAGGTCAGTTTCAAGGAGGCTTGGAGCATTCTAAATGATGATATTCTAGGAGCATTCCTATAAGCTTGATCTCATGTACGTAATAGATTATTTATTTACTTTTTGAACAAGGAATGACATTTTTTTTAATTGAGAAATGAAAAAGACTAATACTTAAAAGATACAAGCTCCCCAAAGAAGAATAATTAAACAAAAAGAACAATACAAGAAAAGTAAATTATGAGGAAACAAAGTCAGCCCCATTCAAATTATATCTCGAAGAGAAAACCACTAACGAAGCCTGGAATGAAAACACCAACGAGAGGCCTTCAAATGAATGGCTTCACAACGATCTAACCATTGAAATGCTTGCTTTAAAAAACTCTTTTCATTAGATCAATGAAGAGACTTGTTTCCTTTTTTTTTTTTTTAAAAAAAACTCTTGATTTCTTTCTCACCATCGTTTCACGATAATTGCTTTTACAACGTTGACCCATAATGGATGAGGCCGAGAAGGAAAGCAAGGACCCATTAACAACGGTAGCGAGTTGCATTTTGAGTCATTAGAGAAAACCCAACGAGTGTTGAAACAAGCAAAAAGCTGTTGCCACTTTCTAGCAAGATAGAGCATATAAACGATAAAAGAGTAGGTGGTTTAAACTCTTTGAATCTGATTCACCTAATAAACAATTAGAGGGCATGAGGAACATCGAAGGCAACTTACTTTGCAGCACGTCCATATACTGTAGTATTGAACTACTGTTTAACACAAAATTCACATTAGAATGTTGATCTTTTTTAGACATTTCGATGTTGATAATGCTGAAAATAAAGCTTTAGGTAATGGATAATCAATTGATAATTGTCTGGCAAGGGATTTAACTGAAAATTTTCTCGAGGCATTAATACTCCAACCCTTAGAATCCTCACTGCAGACACTGTAATGACGTTGCAATACTCACGATTGAAGTTTTTTTTTTTTTGTCCGTTGAACATTAATGTCTTTTAATTTATTCAATGACAAGTTTGGTCTCTTGTTAAAAAAAATCAATTTTGTAACAAAATTTTTCAATTTCGATTTGGAGGTTCCATAACAATGCTCGGTAAGCCAAATGGCTTTGGCGATTCACCCTCGAGTCTAGCTCCCTAGTCCCTATCGCATAATATTATTGTAGCAAGTTTGGTCCCCATCCTTAGGCTTACCAAAAAGAGGGAGCCCCAAGTATTCTACAGGCCAAGATCTCTTCTTACAGTCAAATCTCTTAGCAATGCTATCAACCCATAAACTATCACAATCTATGCCCAAAAATTCTGATTTATGTCGGTTGATATTCAAACTAGATGCCTCTTGAAGGAAATTGACCAAACTAAAGAGATTTTCTATGTCCTCCTCTTTGCTCGATGAGAAAAGAATGTTGTTGTCTGCGGATGATGATTAGTGTGAATAGAATCATTGTTTAAGGAATATCCTTTGATGAAATCAATGTCAGCTGTCATTGATAAAATTCTACTAAGAGAATCCATCACAATGATAAAGAGAAAAGGGGACAACGTATCACCTTGCGTAAGACCTCTCGATGCTTTAATTTTACCCCTCGGTTTACCATTGATAATTATAGAGAAGCTGGTAGAAGAGATGCAACCTCAAATCCATTGCCTTCATTTTGTGCCTAATTGGTACAAGTTTACCTTGCTTTTTGGTAAGTTTTATTGTGTTTAATTAAGGTTTTGTGATTCAAGTCCGTAACGATGGTGAGATTTTGGAATGGATTTAGGTTCGTCAGGTTTGTTTTTATTTCTCTTTGACTTTCCCCCACTACTATCCGTATTCTAGAATCTGATTTAGATTTCAATAGTTACGTTCTAAACTGCTGGAGAATCCTAAATGTAGAAACTTAAAATTAATCATGTTTCTTCCACTCTAAGAAGTAGAGACACTTTAGTTTGGCTAGCGTGCTCGTGTTAGACACTTGGACACTTCGACACTTATTGGAAATGGACACGTATTAGACACTTGTTAGACATTAGTTTTACAAAGTGATGTAAGTAGAATGAGGTTAAATTGGGTAATTAGGCAATAAGTCCAGGTTAATTCCCTTTTTACCCGTAGTTATATTAAAACTCTATAAATAGGAGTCTTCCCCCATGTATGGACAATTAATGAATAAGTTAAGGCGAGGGACTGCACATCCCTTTTTCCCAGTTCAAATTCGGGTGTCGCCTCATCAACAATTTTCCTTCAAGAATTCTCCAAGATTAGTCTACATCAAATTGGTATTAGAGTGCCTTCGTGAAAGGACCTGATGGTGATCAAGAACACCAACAAGCTTCCCAACCTTCAAACTCGTGATGCGGAAGCATCCTTCTCCACATCTCCTCAAACTGTGAATTGAAGACTTGCAATTTGGAAACTTTAGTGGATGGTTTATGGGACAATATGATTTTGATGCAAACCTCAAAGGCCCGGTTGCAACAAGCTATTGAGAAGTTATCGTCGGAAGTGGGAAAGATGACCAACAATCAATCAAGAACCAACCAAGAAAATCCAAGGATGTAAAAAGTTGCAAGAAATCCACCCAGAAGACAAATTTCAGAATTTCAACCAACAATCAATTATCAAAATCATCCTGTAGGTATTTTTCCTCAACAACAAAGACCGATTCCACACAATATGATGAGATATGATTCAGACTCTTCAAGCGATGAAGGTTGTCCACAATTTCACCAAAATTATTTTCGAAGGTACCCTCCTAATCATTTGTATCAAGAAAACCATCTTCGAGCCCAAGAACCATACCAAGAACACAAAAATTATGGTTATAATGGCCTTGTTTTCTATCAAGAGGAGTTTTTTTTTAAAAGGAAACAAGTCTCTTTCATTGATAAAATGAATTGAGACAAAAGCTCAGAGTACATAATTGGGAAACATCATCAAAATAGCCTAAGGATCAGGGAATGCACCCGGACATCTCAACTAGGTTGACACCTCCGTAGCACTCTCATCATATCCAAGATAATTGTAAACGAAATAAGAAACCAATAATTACTACTAGCTCAATCCAATGTAAGGGAAAACCCCGAATACATGGGTCAAAGACAAAAGAACTAAAAGACATGAATCTGAAAGGAAATACATTATACAAAATCCCTTTAAGAACAATCTAAACTCTAAGGTGCTGGAAACAATCGCCACTTTCAAAATTACCAAGATCTAACCACTGATACATCAAATACCTTCCCAAGACCTCAAGATCAAGCAGGTAATAATTCCCATGTCCAAGAAACTTATCCAACTTATCATAATGGTCAACAACATCACCCACTGTTTAGACATTATGACCAAGAAGCTGTCCAAGAATATCAAGATTGGCAACATCAGAACTAGAAACATCAATATTGGCACCAAGATTCAAATTATAGAATGAAAATTGACTTGCCTTGCTATAATGGCCGAATGAATGTGAAATTTTTTTTGAACTGGGCTTGTGTCGTTGACTGTATATTCAAGGAACATTTGGATCAAGAGCAGCCTAGTGGAGATGGAATATTTGGAATTTTGGATGGAGTTTTTGACATTGCAGCAGCTGCAACAGAGGTATTAGATGACCTTGATGATAAAAGATTTGATGAACTCGATGGACTTAATGGAAATTTTATGTCTTGGACTTTTTTACATAATAATTTTGTTTAAGATGTAGGAGGTTGGTTTGACCATACTCCGTTGTACAAGTTTATTTTATTTCTTAATTGTTTCATTTTTTTCTTCTTGTTAAAACTCAAGAACGAGTTTCCTTTTTGGAGGGGTAGAATGATATAAGTAGAATGAGGTTAAATTGGGTAATTAGGCAATAGGTTTAGGTTAATTCCCTTTTTACCCCCACTTGTATTAAAACTCTATAAATAGGAGTCTTCCCCCCATGTATGGACAATTAATGAATAAGATTTTCCTTCAAGAATTCTCCAAGATTCGTAGTCTACATCACAAAGTCAAAATAGGACTGACATTTGTTAGACATGCATCAAATACTTGTTACATATACTAAAATAGACACAAATATGACAAAAATATCTAAATATAAGAGCGAAATGCATCAAACTAATTTTTTAAGCATATAAATATATAAACTCATTGACTTTGAATTTTCTTCTTGTTTGAAAATGATATATATTTTAAAAAATGTATTTTTAATGAACGTGTCCTTGTTGTGTCCATGACCTAGATTTTTTTAAAAATTAGCGTGTCATTGTGTTTGTGTCGTGTCATATCTATGTTTCGTATCCGTATCCGTGCTTCTTTAGCTTGCATTTTTCTTCATCACTTAGCCCCCAAATTTATTTTTTTTCAGAAGTAGACAATAAGACTTCTCCTCCTATTCCATCCTCCATTCTGACGAAGTTTGCTTCTTGAGTTTCGTGAAATTTCTCCATTGGTTTATGGAAGAAGTCGTTTCAGTTTAAGTTTGGCAAGTTTTGTTTTGTTGTACCTGAGATTTCGATGTTTTGGTTCTTCTCTCAAGCTTTTAAACCGGCAGTTTGGTTGCCCTTTTGGTTACTTGAAGTCTTTAGCCTTGATAGATGACTTTGGTCTTGAGTTTTTGTGAATTTCCTCCTTTGGCTGCAACATTTTGTTTTGACTTCTCCGAGATATTTGGTTTGACTTCCGTAAGGAGATTTTTGTTTCTTTACTGGTGTTGGTTTTGGTTCTTCCAAAGCTGTTTTCAATGAATTATTTTTTCTTTCTAAGTTGCTTGAAGTTTGGGAGTTTGTAGCACCATTCTTTTTGCTATTAAGTAGTTTTTTGTGTGTGTTGCATCAGATTGCTTTTTGTTGTGTTTTAAATGGTTTTTATGATTGGTTGGTGGTCAATTCTTGGTTTTGTCGGGGTTTTTTTGAAGCAGCTATTGGTTTTCCGTGTTTGAAGGAGGTCTCATTCATAGTTACTTCATTCTTTTGCAAGCGCTCTAAGTATTTCAGTTGATTTCGGAAATGCTCTTGGCTCTTTATTTGTTTATTTTTCTTGGATAATCTTTTTATGGTTGTGTTTGTTATTTGTACTTTTTCTTTCTTTTTCACTCCCTTTGGGAGTTTGTATTCCTTGAACATTTATTCCTTTTCATTATATAATGAGAAGTTGTTTCTTGTTCATAAAAAACTGAGACCTGAAGTTAATATCAGGTACGTGTTTGATCATATTTTTTAAGTTATTGTCCTTGTCTTATTTAGTTTTCTTATTTTAATGAAGGTTCTACTTGAATATTACATTGAACGGCAGTGCTTGCTGAAATGTACAAGGCGCATACTCTTGCATGCTTGTAAGTTCATTTTGATGAATGATTACCGTCTCTGATTTTGAGTTGTTTGCTCATTTCTCCTCTCTAACTGGTTTTTGCATACATGAGTTTTCTCATTTAGGGCTATCTTTTTCCTAGATGTTAATTTTTACTTAATTCCTAATTTATTTTATTGATGCTCTCATTGTAGTATTTGTTGGAAATGGTTCCAAAAAAGATGATATTTGTGACAAGGCACAAAGACTGA

mRNA sequence

ATGAACTCCCAAGCTCTCGCGGGGACATCTCGCATGGCTACCTCCACTTCCGTCGACTCGTCTCTCTGGTGGGATCCTTTCCGTCCACTTCTTACTGAGCTTGAAAATGTCTCCCTCTCTTCTGCAGAACTTCCTCCTAAACTGATGAAAAAGATGGACGACAACCATGCTTGGTTCGTGGACACCGTTTCACTCTTCAAGAAACCGAACGAGAAATCAAGGGTGGCTTTAGATTCTCCGGAATATTTGTTGGAAATGGTTCCAAAAAAGATGATATTTGTGACAAGGCACAAAGACTGA

Coding sequence (CDS)

ATGAACTCCCAAGCTCTCGCGGGGACATCTCGCATGGCTACCTCCACTTCCGTCGACTCGTCTCTCTGGTGGGATCCTTTCCGTCCACTTCTTACTGAGCTTGAAAATGTCTCCCTCTCTTCTGCAGAACTTCCTCCTAAACTGATGAAAAAGATGGACGACAACCATGCTTGGTTCGTGGACACCGTTTCACTCTTCAAGAAACCGAACGAGAAATCAAGGGTGGCTTTAGATTCTCCGGAATATTTGTTGGAAATGGTTCCAAAAAAGATGATATTTGTGACAAGGCACAAAGACTGA

Protein sequence

MNSQALAGTSRMATSTSVDSSLWWDPFRPLLTELENVSLSSAELPPKLMKKMDDNHAWFVDTVSLFKKPNEKSRVALDSPEYLLEMVPKKMIFVTRHKD

Homology

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BLAST of Lsi10G004670.1 vs. TrEMBL
Match: E5GC19_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 6.3e-28
Identity = 63/70 (90.00%), Postives = 64/70 (91.43%), Query Frame = 1


Query: 12 MATSTSVDSSLWWDPFRPLLTELENVSLSSAELPPKLMKKMDDNHAWFVDTVSLFKKPNE 71
          MA+STSVDSSLWWDPF P LTELENVSLSS ELPP LMKKMDDNHAWFV TVSLFKKPNE
Sbjct: 1  MASSTSVDSSLWWDPFHPFLTELENVSLSSTELPPTLMKKMDDNHAWFVGTVSLFKKPNE 60

Query: 72 KSRVALDSPE 82
          KSRVALDS E
Sbjct: 61 KSRVALDSQE 70

[Close]

BLAST of Lsi10G004670.1 vs. TrEMBL
Match: A0A0A0LPK9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G263960 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 8.5e-25
Identity = 58/70 (82.86%), Postives = 61/70 (87.14%), Query Frame = 1


Query: 12 MATSTSVDSSLWWDPFRPLLTELENVSLSSAELPPKLMKKMDDNHAWFVDTVSLFKKPNE 71
          M +STSVDS LWWDPF P LTELENVSLSS ELPP LMKK+D NHAWFV TVSLFKKPNE
Sbjct: 1  MTSSTSVDSFLWWDPFHPFLTELENVSLSSTELPPTLMKKVDANHAWFVGTVSLFKKPNE 60

Query: 72 KSRVALDSPE 82
          KSRVAL+S E
Sbjct: 61 KSRVALNSQE 70

[Close]

BLAST of Lsi10G004670.1 vs. TrEMBL
Match: W9R6T0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_024956 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.0e-17
Identity = 48/70 (68.57%), Postives = 53/70 (75.71%), Query Frame = 1


Query: 12 MATSTSVDSSLWWDPFRPLLTELENVSLSSAELPPKLMKKMDDNHAWFVDTVSLFKKPNE 71
          MA   SVD SLWWDPF  LLTELEN SLSS +LPP L KK+ DNH W VDTVS FK PNE
Sbjct: 1  MANLKSVDPSLWWDPFSLLLTELENASLSS-DLPPNLTKKLKDNHDWLVDTVSRFKPPNE 60

Query: 72 KSRVALDSPE 82
          KS+ AL+S +
Sbjct: 61 KSKEALNSQQ 69

[Close]

BLAST of Lsi10G004670.1 vs. TrEMBL
Match: W6JJ93_NICBE (Nuclear pore complex protein Nup188b OS=Nicotiana benthamiana GN=NbNup188b PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 8.5e-17
Identity = 45/74 (60.81%), Postives = 59/74 (79.73%), Query Frame = 1


Query: 6  LAGTSRMATSTSVDSSLWWDPFRPLLTELENVSLSSAELPPKLMKKMDDNHAWFVDTVSL 65
          +A  +++    +VD+SLWW+PF  LLTELE+VSLSS +LPP L KK+ DNHAWF+ T+SL
Sbjct: 1  MATLAKVNDEVTVDASLWWEPFTELLTELESVSLSS-DLPPLLEKKIKDNHAWFLHTISL 60

Query: 66 FKKPNEKSRVALDS 80
          FK PN+KSR ALD+
Sbjct: 61 FKSPNQKSRDALDA 73

[Close]

BLAST of Lsi10G004670.1 vs. TrEMBL
Match: A0A087GKR9_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA7G265400 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.2e-16
Identity = 43/68 (63.24%), Postives = 56/68 (82.35%), Query Frame = 1


Query: 12 MATSTSVDSSLWWDPFRPLLTELENVSLSSAELPPKLMKKMDDNHAWFVDTVSLFKKPNE 71
          MA S SVDSSLWWDPF  LLTELEN SL   +LP +++KK+++NHAWFV+T+S+FK P+ 
Sbjct: 1  MANSKSVDSSLWWDPFDSLLTELENASLYD-DLPDRIVKKLEENHAWFVNTLSMFKSPSV 60

Query: 72 KSRVALDS 80
          KS+ AL+S
Sbjct: 61 KSKEALNS 67

[Close]

BLAST of Lsi10G004670.1 vs. TAIR10
Match: AT4G38760.1 (AT4G38760.1 Protein of unknown function (DUF3414))

HSP 1 Score: 91.3 bits (225), Expect = 3.7e-19
Identity = 46/88 (52.27%), Postives = 64/88 (72.73%), Query Frame = 1


Query: 12  MATSTSVDSSLWWDPFRPLLTELENVSLSSAELPPKLMKKMDDNHAWFVDTVSLFKKPNE 71
           MA   SVDSSLWWDPF  LLT+LEN SLS  +LP  + KK+++NHAWFV T+S+FK P+E
Sbjct: 1   MANPNSVDSSLWWDPFDSLLTDLENASLSD-DLPQPIAKKLEENHAWFVGTLSMFKPPSE 60

Query: 72  KSRVALDSPEYLLEMVPKKMIFVTRHKD 100
           KS+ AL+S   L+++   +++   + KD
Sbjct: 61  KSKEALNSD--LVKIKEHQLVIKPQLKD 85

[Close]

BLAST of Lsi10G004670.1 vs. NCBI nr
Match: gi|659116180|ref|XP_008457947.1| (PREDICTED: uncharacterized protein LOC103497512 [Cucumis melo])

HSP 1 Score: 131.3 bits (329), Expect = 9.1e-28
Identity = 63/70 (90.00%), Postives = 64/70 (91.43%), Query Frame = 1


Query: 12 MATSTSVDSSLWWDPFRPLLTELENVSLSSAELPPKLMKKMDDNHAWFVDTVSLFKKPNE 71
          MA+STSVDSSLWWDPF P LTELENVSLSS ELPP LMKKMDDNHAWFV TVSLFKKPNE
Sbjct: 1  MASSTSVDSSLWWDPFHPFLTELENVSLSSTELPPTLMKKMDDNHAWFVGTVSLFKKPNE 60

Query: 72 KSRVALDSPE 82
          KSRVALDS E
Sbjct: 61 KSRVALDSQE 70

[Close]

BLAST of Lsi10G004670.1 vs. NCBI nr
Match: gi|307136176|gb|ADN34017.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 131.3 bits (329), Expect = 9.1e-28
Identity = 63/70 (90.00%), Postives = 64/70 (91.43%), Query Frame = 1


Query: 12 MATSTSVDSSLWWDPFRPLLTELENVSLSSAELPPKLMKKMDDNHAWFVDTVSLFKKPNE 71
          MA+STSVDSSLWWDPF P LTELENVSLSS ELPP LMKKMDDNHAWFV TVSLFKKPNE
Sbjct: 1  MASSTSVDSSLWWDPFHPFLTELENVSLSSTELPPTLMKKMDDNHAWFVGTVSLFKKPNE 60

Query: 72 KSRVALDSPE 82
          KSRVALDS E
Sbjct: 61 KSRVALDSQE 70

[Close]

BLAST of Lsi10G004670.1 vs. NCBI nr
Match: gi|778669647|ref|XP_011649284.1| (PREDICTED: uncharacterized protein LOC101204633 [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-24
Identity = 58/70 (82.86%), Postives = 61/70 (87.14%), Query Frame = 1


Query: 12 MATSTSVDSSLWWDPFRPLLTELENVSLSSAELPPKLMKKMDDNHAWFVDTVSLFKKPNE 71
          M +STSVDS LWWDPF P LTELENVSLSS ELPP LMKK+D NHAWFV TVSLFKKPNE
Sbjct: 1  MTSSTSVDSFLWWDPFHPFLTELENVSLSSTELPPTLMKKVDANHAWFVGTVSLFKKPNE 60

Query: 72 KSRVALDSPE 82
          KSRVAL+S E
Sbjct: 61 KSRVALNSQE 70

[Close]

BLAST of Lsi10G004670.1 vs. NCBI nr
Match: gi|700206782|gb|KGN61901.1| (hypothetical protein Csa_2G263960 [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-24
Identity = 58/70 (82.86%), Postives = 61/70 (87.14%), Query Frame = 1


Query: 12 MATSTSVDSSLWWDPFRPLLTELENVSLSSAELPPKLMKKMDDNHAWFVDTVSLFKKPNE 71
          M +STSVDS LWWDPF P LTELENVSLSS ELPP LMKK+D NHAWFV TVSLFKKPNE
Sbjct: 1  MTSSTSVDSFLWWDPFHPFLTELENVSLSSTELPPTLMKKVDANHAWFVGTVSLFKKPNE 60

Query: 72 KSRVALDSPE 82
          KSRVAL+S E
Sbjct: 61 KSRVALNSQE 70

[Close]

BLAST of Lsi10G004670.1 vs. NCBI nr
Match: gi|645261245|ref|XP_008236201.1| (PREDICTED: uncharacterized protein LOC103334994 [Prunus mume])

HSP 1 Score: 100.1 bits (248), Expect = 2.2e-18
Identity = 49/70 (70.00%), Postives = 57/70 (81.43%), Query Frame = 1


Query: 12 MATSTSVDSSLWWDPFRPLLTELENVSLSSAELPPKLMKKMDDNHAWFVDTVSLFKKPNE 71
          MA+  SVD+SLWWDPF  LLTELEN SLSS +LPP L+KK+ DNHAWFVDT+S FK PNE
Sbjct: 1  MASPKSVDASLWWDPFSVLLTELENASLSS-DLPPNLVKKLKDNHAWFVDTLSHFKPPNE 60

Query: 72 KSRVALDSPE 82
           SR AL+S +
Sbjct: 61 NSREALNSQQ 69

The following BLAST results are available for this feature:

BLAST of Lsi10G004670.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi10G004670.1 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GC19_CUCME	6.3e-28	90.00	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0LPK9_CUCSA	8.5e-25	82.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G263960 PE=4 SV=1	[more]
W9R6T0_9ROSA	5.0e-17	68.57	Uncharacterized protein OS=Morus notabilis GN=L484_024956 PE=4 SV=1	[more]
W6JJ93_NICBE	8.5e-17	60.81	Nuclear pore complex protein Nup188b OS=Nicotiana benthamiana GN=NbNup188b PE=2 ...	[more]
A0A087GKR9_ARAAL	4.2e-16	63.24	Uncharacterized protein OS=Arabis alpina GN=AALP_AA7G265400 PE=4 SV=1	[more]

BLAST of Lsi10G004670.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G38760.1	3.7e-19	52.27	Protein of unknown function (DUF3414)	[more]

BLAST of Lsi10G004670.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659116180\|ref\|XP_008457947.1\|	9.1e-28	90.00	PREDICTED: uncharacterized protein LOC103497512 [Cucumis melo]	[more]
gi\|307136176\|gb\|ADN34017.1\|	9.1e-28	90.00	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|778669647\|ref\|XP_011649284.1\|	1.2e-24	82.86	PREDICTED: uncharacterized protein LOC101204633 [Cucumis sativus]	[more]
gi\|700206782\|gb\|KGN61901.1\|	1.2e-24	82.86	hypothetical protein Csa_2G263960 [Cucumis sativus]	[more]
gi\|645261245\|ref\|XP_008236201.1\|	2.2e-18	70.00	PREDICTED: uncharacterized protein LOC103334994 [Prunus mume]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi10G004670	Lsi10G004670	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi10G004670.1.CDS.1	Lsi10G004670.1.CDS.1	CDS
Lsi10G004670.1.CDS.2	Lsi10G004670.1.CDS.2	CDS
Lsi10G004670.1.CDS.3	Lsi10G004670.1.CDS.3	CDS
Lsi10G004670.1.CDS.4	Lsi10G004670.1.CDS.4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi10G004670.1	Lsi10G004670.1-protein	polypeptide