Lsi10G003700.1 (mRNA) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi10G003700.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr10 : 5711594 .. 5712564 (+)
Sequence length477
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTAAAGTCAATTTAAGTATAACTTAATAAACAAGACAGTAAATACGATTCTTAAGATCAAATATTTGTTTTTCATTCTACAATTAGTTCAACTCAAAGAAAAAAGAAGTTTATGTAATTGAGTTAAGAAATTGAGTGGACATTTTTATTCTCTGATCGTAGTCTAATAAAACCCACAAAATAAAGTAGGGAGAAAATAAGGAATCTCAAATTAAATTACTCTGGCAATACAAGTAACACATAAATTTCATAAACCAAATACATGGTTGCTATGATTTATTATAAAGACTATAAGTAAATTAGAAAGAAGTTTGGGCTCCCCTTGTGCCGATTGAGTGTAAGGTTAAATGGATCTCGAGGTACATTGATGATATTGTTGTTGTTCCTAGGCTATCAGGTGTGGAGACTTGTGGTGTTCGTGGAAAGGTTGTGTCTAGTCATCGAAGGGGGGAGTGAGTGTTCATTAGGGTGTGCACTGGTGTTTGCCACCACGTGGAGCTCTGAAATTAAATATCGACATTGCTTGTCATCCGGTGAACTCAAAGATGGGGATGGGAGCTGTTGTGCGAGATGATTGTAGGAGAGTCATTACTGCCCATGCTCTTGTTCGTCCAGGTTGTGTATCAGCCAAAGATGGTGAAATTTTTGCTTTTATAGCTGGTTTGAAGTTAGCTGAAGTTCACAGATGCTTAGGGTGTTGGGTGAAGATGGATGCTGAAATTGTGGTGAAGAAGATACAAGTTCTTTCCTTTTCATTAATTCCTAATGGTATATATTATTTATGTTGAAGCATTCTCTTTAATGCAAAGGTTGGGGTTTATGCTCATAGAAGGTGTAATAAGGTGACCCATAATTTGGTCACTCAAGTTATTGTAGCCAATTCTTCTTAGGTTTAGATTGACTGTATTCTCCCTTGGTTCTCAATCATTGTCGGGGCTGAGATGGGGGACTTGGATCTTATTGGATGA

mRNA sequence

ATGATTAAAAAAGAAGTTTGGGCTCCCCTTGTGCCGATTGAGTGTAAGGTTAAATGGATCTCGAGGTACATTGATGATATTGTTGTTGTTCCTAGGCTATCAGGTGTGGAGACTTGTGGTGTTCGTGGAAAGGGTGTGCACTGGTGTTTGCCACCACGTGGAGCTCTGAAATTAAATATCGACATTGCTTGTCATCCGGTGAACTCAAAGATGGGGATGGGAGCTGTTGTGCGAGATGATTGTAGGAGAGTCATTACTGCCCATGCTCTTGTTCGTCCAGGTTGTGTATCAGCCAAAGATGGTGAAATTTTTGCTTTTATAGCTGGTTTGAAGTTAGCTGAAGTTCACAGATGCTTAGGGTGTTGGGTGAAGATGGATGCTGAAATTGTGGTGAAGAAGATACAAATTGACTGTATTCTCCCTTGGTTCTCAATCATTGTCGGGGCTGAGATGGGGGACTTGGATCTTATTGGATGA

Coding sequence (CDS)

ATGATTAAAAAAGAAGTTTGGGCTCCCCTTGTGCCGATTGAGTGTAAGGTTAAATGGATCTCGAGGTACATTGATGATATTGTTGTTGTTCCTAGGCTATCAGGTGTGGAGACTTGTGGTGTTCGTGGAAAGGGTGTGCACTGGTGTTTGCCACCACGTGGAGCTCTGAAATTAAATATCGACATTGCTTGTCATCCGGTGAACTCAAAGATGGGGATGGGAGCTGTTGTGCGAGATGATTGTAGGAGAGTCATTACTGCCCATGCTCTTGTTCGTCCAGGTTGTGTATCAGCCAAAGATGGTGAAATTTTTGCTTTTATAGCTGGTTTGAAGTTAGCTGAAGTTCACAGATGCTTAGGGTGTTGGGTGAAGATGGATGCTGAAATTGTGGTGAAGAAGATACAAATTGACTGTATTCTCCCTTGGTTCTCAATCATTGTCGGGGCTGAGATGGGGGACTTGGATCTTATTGGATGA

Protein sequence

MIKKEVWAPLVPIECKVKWISRYIDDIVVVPRLSGVETCGVRGKGVHWCLPPRGALKLNIDIACHPVNSKMGMGAVVRDDCRRVITAHALVRPGCVSAKDGEIFAFIAGLKLAEVHRCLGCWVKMDAEIVVKKIQIDCILPWFSIIVGAEMGDLDLIG
Homology
[Close]
BLAST of Lsi10G003700.1 vs. TrEMBL
Match: M5WZF6_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa020664mg PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.0e-08
Identity = 38/101 (37.62%), Postives = 51/101 (50.50%), Query Frame = 1 

Query: 44  KGVHWCLPPRGALKLNIDIACHPVNSKMGMGAVVRDDCRRVITAHALVRPGCVSAKDGEI 103
           K   W  PP G  KLN+D A  P     G+GAVVR+D   V+ A AL      S+K  EI
Sbjct: 31  KSTKWSPPPAGKYKLNVDAAFIPETGVGGIGAVVRNDKGEVMAAMALPLASATSSKHAEI 90

Query: 104 FAFIAGLKLAEVHRCLGCWVKMDAEIVVKKIQIDCILPWFS 145
            AF+ G+K A    C    ++ D++ VV  ++ D    W S
Sbjct: 91  MAFLFGMKFARDAGCSSILIESDSQGVVNDVKKDEEESWAS 131

[Close]
BLAST of Lsi10G003700.1 vs. NCBI nr
Match: gi|595891046|ref|XP_007213514.1| (hypothetical protein PRUPE_ppa020664mg, partial [Prunus persica])

HSP 1 Score: 68.2 bits (165), Expect = 1.5e-08
Identity = 38/101 (37.62%), Postives = 51/101 (50.50%), Query Frame = 1 

Query: 44  KGVHWCLPPRGALKLNIDIACHPVNSKMGMGAVVRDDCRRVITAHALVRPGCVSAKDGEI 103
           K   W  PP G  KLN+D A  P     G+GAVVR+D   V+ A AL      S+K  EI
Sbjct: 31  KSTKWSPPPAGKYKLNVDAAFIPETGVGGIGAVVRNDKGEVMAAMALPLASATSSKHAEI 90

Query: 104 FAFIAGLKLAEVHRCLGCWVKMDAEIVVKKIQIDCILPWFS 145
            AF+ G+K A    C    ++ D++ VV  ++ D    W S
Sbjct: 91  MAFLFGMKFARDAGCSSILIESDSQGVVNDVKKDEEESWAS 131

[Close]
BLAST of Lsi10G003700.1 vs. NCBI nr
Match: gi|645218223|ref|XP_008229542.1| (PREDICTED: uncharacterized protein LOC103328904 [Prunus mume])

HSP 1 Score: 62.8 bits (151), Expect = 6.3e-07
Identity = 42/121 (34.71%), Postives = 56/121 (46.28%), Query Frame = 1 

Query: 22  RYIDDIVVVPRLSGVETCGVRGKGVH--------WCLPPRGALKLNIDIACHPVNSKMGM 81
           R+ DD+        VE   V    VH        WC PP G LKLN+D AC     K G+
Sbjct: 7   RHPDDLYATAHRLSVEFISVNTAPVHTHSPSSTHWCPPPPGKLKLNVDGACSTFVWKCGL 66

Query: 82  GAVVRDDCRRVITAHALVRPGCVSAKDGEIFAFIAGLKLAEVHRCLGCWVKMDAEIVVKK 135
           GAVVR+    ++ A ++   GC SAK  E+ A   GL+ A         V+ DA+  +  
Sbjct: 67  GAVVRNVHGDLLGAISVPITGCFSAKITELLAIRKGLQFAWEANYDSLVVETDAKNAIND 126

[Close]
BLAST of Lsi10G003700.1 vs. NCBI nr
Match: gi|645241191|ref|XP_008226963.1| (PREDICTED: uncharacterized protein LOC103326508 [Prunus mume])

HSP 1 Score: 60.5 bits (145), Expect = 3.1e-06
Identity = 35/101 (34.65%), Postives = 50/101 (49.50%), Query Frame = 1 

Query: 44  KGVHWCLPPRGALKLNIDIACHPVNSKMGMGAVVRDDCRRVITAHALVRPGCVSAKDGEI 103
           K   W  PP G  KLN+D A  P     G+GAVVR+D   V+ A AL      S+K  EI
Sbjct: 57  KPTKWSPPPVGKYKLNVDAAFIPETGVGGIGAVVRNDKGEVMAAMALPLASATSSKHAEI 116

Query: 104 FAFIAGLKLAEVHRCLGCWVKMDAEIVVKKIQIDCILPWFS 145
            A + G+K A+        ++ D++ V+  ++ D    W S
Sbjct: 117 MALLFGMKFAQDAGFSSILIESDSQGVINDVRKDEEESWAS 157

The following BLAST results are available for this feature:
BLAST of Lsi10G003700.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi10G003700.1 vs. TrEMBL
Match NameE-valueIdentityDescription
M5WZF6_PRUPE1.0e-0837.62Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa020664mg PE=4 S... [more]
BLAST of Lsi10G003700.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi10G003700.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|595891046|ref|XP_007213514.1|1.5e-0837.62hypothetical protein PRUPE_ppa020664mg, partial [Prunus persica][more]
gi|645218223|ref|XP_008229542.1|6.3e-0734.71PREDICTED: uncharacterized protein LOC103328904 [Prunus mume][more]
gi|645241191|ref|XP_008226963.1|3.1e-0634.65PREDICTED: uncharacterized protein LOC103326508 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi10G003700Lsi10G003700gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi10G003700.1.CDS.1Lsi10G003700.1.CDS.1CDS
Lsi10G003700.1.CDS.2Lsi10G003700.1.CDS.2CDS
Lsi10G003700.1.CDS.3Lsi10G003700.1.CDS.3CDS
Lsi10G003700.1.CDS.4Lsi10G003700.1.CDS.4CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi10G003700.1Lsi10G003700.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 56..142
score: 2.1
NoneNo IPR availablePANTHERPTHR33033FAMILY NOT NAMEDcoord: 48..135
score: 1.0
NoneNo IPR availablePFAMPF13456RVT_3coord: 59..135
score: 2.