Lsi10G003700 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi10G003700
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr10 : 5711594 .. 5712564 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTAAAGTCAATTTAAGTATAACTTAATAAACAAGACAGTAAATACGATTCTTAAGATCAAATATTTGTTTTTCATTCTACAATTAGTTCAACTCAAAGAAAAAAGAAGTTTATGTAATTGAGTTAAGAAATTGAGTGGACATTTTTATTCTCTGATCGTAGTCTAATAAAACCCACAAAATAAAGTAGGGAGAAAATAAGGAATCTCAAATTAAATTACTCTGGCAATACAAGTAACACATAAATTTCATAAACCAAATACATGGTTGCTATGATTTATTATAAAGACTATAAGTAAATTAGAAAGAAGTTTGGGCTCCCCTTGTGCCGATTGAGTGTAAGGTTAAATGGATCTCGAGGTACATTGATGATATTGTTGTTGTTCCTAGGCTATCAGGTGTGGAGACTTGTGGTGTTCGTGGAAAGGTTGTGTCTAGTCATCGAAGGGGGGAGTGAGTGTTCATTAGGGTGTGCACTGGTGTTTGCCACCACGTGGAGCTCTGAAATTAAATATCGACATTGCTTGTCATCCGGTGAACTCAAAGATGGGGATGGGAGCTGTTGTGCGAGATGATTGTAGGAGAGTCATTACTGCCCATGCTCTTGTTCGTCCAGGTTGTGTATCAGCCAAAGATGGTGAAATTTTTGCTTTTATAGCTGGTTTGAAGTTAGCTGAAGTTCACAGATGCTTAGGGTGTTGGGTGAAGATGGATGCTGAAATTGTGGTGAAGAAGATACAAGTTCTTTCCTTTTCATTAATTCCTAATGGTATATATTATTTATGTTGAAGCATTCTCTTTAATGCAAAGGTTGGGGTTTATGCTCATAGAAGGTGTAATAAGGTGACCCATAATTTGGTCACTCAAGTTATTGTAGCCAATTCTTCTTAGGTTTAGATTGACTGTATTCTCCCTTGGTTCTCAATCATTGTCGGGGCTGAGATGGGGGACTTGGATCTTATTGGATGA

mRNA sequence

ATGATTAAAAAAGAAGTTTGGGCTCCCCTTGTGCCGATTGAGTGTAAGGTTAAATGGATCTCGAGGTACATTGATGATATTGTTGTTGTTCCTAGGCTATCAGGTGTGGAGACTTGTGGTGTTCGTGGAAAGGGTGTGCACTGGTGTTTGCCACCACGTGGAGCTCTGAAATTAAATATCGACATTGCTTGTCATCCGGTGAACTCAAAGATGGGGATGGGAGCTGTTGTGCGAGATGATTGTAGGAGAGTCATTACTGCCCATGCTCTTGTTCGTCCAGGTTGTGTATCAGCCAAAGATGGTGAAATTTTTGCTTTTATAGCTGGTTTGAAGTTAGCTGAAGTTCACAGATGCTTAGGGTGTTGGGTGAAGATGGATGCTGAAATTGTGGTGAAGAAGATACAAATTGACTGTATTCTCCCTTGGTTCTCAATCATTGTCGGGGCTGAGATGGGGGACTTGGATCTTATTGGATGA

Coding sequence (CDS)

ATGATTAAAAAAGAAGTTTGGGCTCCCCTTGTGCCGATTGAGTGTAAGGTTAAATGGATCTCGAGGTACATTGATGATATTGTTGTTGTTCCTAGGCTATCAGGTGTGGAGACTTGTGGTGTTCGTGGAAAGGGTGTGCACTGGTGTTTGCCACCACGTGGAGCTCTGAAATTAAATATCGACATTGCTTGTCATCCGGTGAACTCAAAGATGGGGATGGGAGCTGTTGTGCGAGATGATTGTAGGAGAGTCATTACTGCCCATGCTCTTGTTCGTCCAGGTTGTGTATCAGCCAAAGATGGTGAAATTTTTGCTTTTATAGCTGGTTTGAAGTTAGCTGAAGTTCACAGATGCTTAGGGTGTTGGGTGAAGATGGATGCTGAAATTGTGGTGAAGAAGATACAAATTGACTGTATTCTCCCTTGGTTCTCAATCATTGTCGGGGCTGAGATGGGGGACTTGGATCTTATTGGATGA

Protein sequence

MIKKEVWAPLVPIECKVKWISRYIDDIVVVPRLSGVETCGVRGKGVHWCLPPRGALKLNIDIACHPVNSKMGMGAVVRDDCRRVITAHALVRPGCVSAKDGEIFAFIAGLKLAEVHRCLGCWVKMDAEIVVKKIQIDCILPWFSIIVGAEMGDLDLIG
Homology
[Close]
BLAST of Lsi10G003700 vs. TrEMBL
Match: M5WZF6_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa020664mg PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.0e-08
Identity = 38/101 (37.62%), Postives = 51/101 (50.50%), Query Frame = 1 

Query: 44  KGVHWCLPPRGALKLNIDIACHPVNSKMGMGAVVRDDCRRVITAHALVRPGCVSAKDGEI 103
           K   W  PP G  KLN+D A  P     G+GAVVR+D   V+ A AL      S+K  EI
Sbjct: 31  KSTKWSPPPAGKYKLNVDAAFIPETGVGGIGAVVRNDKGEVMAAMALPLASATSSKHAEI 90

Query: 104 FAFIAGLKLAEVHRCLGCWVKMDAEIVVKKIQIDCILPWFS 145
            AF+ G+K A    C    ++ D++ VV  ++ D    W S
Sbjct: 91  MAFLFGMKFARDAGCSSILIESDSQGVVNDVKKDEEESWAS 131

[Close]
BLAST of Lsi10G003700 vs. NCBI nr
Match: gi|595891046|ref|XP_007213514.1| (hypothetical protein PRUPE_ppa020664mg, partial [Prunus persica])

HSP 1 Score: 68.2 bits (165), Expect = 1.5e-08
Identity = 38/101 (37.62%), Postives = 51/101 (50.50%), Query Frame = 1 

Query: 44  KGVHWCLPPRGALKLNIDIACHPVNSKMGMGAVVRDDCRRVITAHALVRPGCVSAKDGEI 103
           K   W  PP G  KLN+D A  P     G+GAVVR+D   V+ A AL      S+K  EI
Sbjct: 31  KSTKWSPPPAGKYKLNVDAAFIPETGVGGIGAVVRNDKGEVMAAMALPLASATSSKHAEI 90

Query: 104 FAFIAGLKLAEVHRCLGCWVKMDAEIVVKKIQIDCILPWFS 145
            AF+ G+K A    C    ++ D++ VV  ++ D    W S
Sbjct: 91  MAFLFGMKFARDAGCSSILIESDSQGVVNDVKKDEEESWAS 131

[Close]
BLAST of Lsi10G003700 vs. NCBI nr
Match: gi|645218223|ref|XP_008229542.1| (PREDICTED: uncharacterized protein LOC103328904 [Prunus mume])

HSP 1 Score: 62.8 bits (151), Expect = 6.3e-07
Identity = 42/121 (34.71%), Postives = 56/121 (46.28%), Query Frame = 1 

Query: 22  RYIDDIVVVPRLSGVETCGVRGKGVH--------WCLPPRGALKLNIDIACHPVNSKMGM 81
           R+ DD+        VE   V    VH        WC PP G LKLN+D AC     K G+
Sbjct: 7   RHPDDLYATAHRLSVEFISVNTAPVHTHSPSSTHWCPPPPGKLKLNVDGACSTFVWKCGL 66

Query: 82  GAVVRDDCRRVITAHALVRPGCVSAKDGEIFAFIAGLKLAEVHRCLGCWVKMDAEIVVKK 135
           GAVVR+    ++ A ++   GC SAK  E+ A   GL+ A         V+ DA+  +  
Sbjct: 67  GAVVRNVHGDLLGAISVPITGCFSAKITELLAIRKGLQFAWEANYDSLVVETDAKNAIND 126

[Close]
BLAST of Lsi10G003700 vs. NCBI nr
Match: gi|645241191|ref|XP_008226963.1| (PREDICTED: uncharacterized protein LOC103326508 [Prunus mume])

HSP 1 Score: 60.5 bits (145), Expect = 3.1e-06
Identity = 35/101 (34.65%), Postives = 50/101 (49.50%), Query Frame = 1 

Query: 44  KGVHWCLPPRGALKLNIDIACHPVNSKMGMGAVVRDDCRRVITAHALVRPGCVSAKDGEI 103
           K   W  PP G  KLN+D A  P     G+GAVVR+D   V+ A AL      S+K  EI
Sbjct: 57  KPTKWSPPPVGKYKLNVDAAFIPETGVGGIGAVVRNDKGEVMAAMALPLASATSSKHAEI 116

Query: 104 FAFIAGLKLAEVHRCLGCWVKMDAEIVVKKIQIDCILPWFS 145
            A + G+K A+        ++ D++ V+  ++ D    W S
Sbjct: 117 MALLFGMKFAQDAGFSSILIESDSQGVINDVRKDEEESWAS 157

The following BLAST results are available for this feature:
BLAST of Lsi10G003700 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi10G003700 vs. TrEMBL
Match NameE-valueIdentityDescription
M5WZF6_PRUPE1.0e-0837.62Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa020664mg PE=4 S... [more]
BLAST of Lsi10G003700 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi10G003700 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|595891046|ref|XP_007213514.1|1.5e-0837.62hypothetical protein PRUPE_ppa020664mg, partial [Prunus persica][more]
gi|645218223|ref|XP_008229542.1|6.3e-0734.71PREDICTED: uncharacterized protein LOC103328904 [Prunus mume][more]
gi|645241191|ref|XP_008226963.1|3.1e-0634.65PREDICTED: uncharacterized protein LOC103326508 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G003700.1Lsi10G003700.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 56..142
score: 2.1
NoneNo IPR availablePANTHERPTHR33033FAMILY NOT NAMEDcoord: 48..135
score: 1.0
NoneNo IPR availablePFAMPF13456RVT_3coord: 59..135
score: 2.

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi10G003700Silver-seed gourdcarlsiB288
Lsi10G003700Silver-seed gourdcarlsiB425
Lsi10G003700Silver-seed gourdcarlsiB808
Lsi10G003700Cucumber (Chinese Long) v3cuclsiB104
Lsi10G003700Cucumber (Chinese Long) v3cuclsiB176
Lsi10G003700Cucumber (Chinese Long) v3cuclsiB524
Lsi10G003700Watermelon (97103) v2lsiwmbB043
Lsi10G003700Watermelon (97103) v2lsiwmbB056
Lsi10G003700Wax gourdlsiwgoB062
Lsi10G003700Wax gourdlsiwgoB080
Lsi10G003700Bottle gourd (USVL1VR-Ls)lsilsiB021
Lsi10G003700Bottle gourd (USVL1VR-Ls)lsilsiB044
Lsi10G003700Cucumber (Gy14) v1cgylsiB145
Lsi10G003700Cucumber (Gy14) v1cgylsiB609
Lsi10G003700Cucurbita maxima (Rimu)cmalsiB507
Lsi10G003700Cucurbita maxima (Rimu)cmalsiB548
Lsi10G003700Cucurbita moschata (Rifu)cmolsiB454
Lsi10G003700Cucurbita moschata (Rifu)cmolsiB491
Lsi10G003700Cucurbita moschata (Rifu)cmolsiB533
Lsi10G003700Cucurbita pepo (Zucchini)cpelsiB195
Lsi10G003700Cucurbita pepo (Zucchini)cpelsiB220
Lsi10G003700Cucurbita pepo (Zucchini)cpelsiB436
Lsi10G003700Cucurbita pepo (Zucchini)cpelsiB589
Lsi10G003700Wild cucumber (PI 183967)cpilsiB091
Lsi10G003700Wild cucumber (PI 183967)cpilsiB497
Lsi10G003700Cucumber (Chinese Long) v2culsiB093
Lsi10G003700Cucumber (Chinese Long) v2culsiB489
Lsi10G003700Melon (DHL92) v3.5.1lsimeB045
Lsi10G003700Melon (DHL92) v3.5.1lsimeB064
Lsi10G003700Watermelon (Charleston Gray)lsiwcgB039
Lsi10G003700Watermelon (Charleston Gray)lsiwcgB057
Lsi10G003700Watermelon (97103) v1lsiwmB079
Lsi10G003700Watermelon (97103) v1lsiwmB084
Lsi10G003700Cucumber (Gy14) v2cgyblsiB086
Lsi10G003700Cucumber (Gy14) v2cgyblsiB456
Lsi10G003700Melon (DHL92) v3.6.1lsimedB047
Lsi10G003700Melon (DHL92) v3.6.1lsimedB068