Lsi10G003250.1 (mRNA) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi10G003250.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr10 : 5218280 .. 5218516 (+)
Sequence length237
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCGGCCTTGTAGACCTCTGGACTTCCGAACAGGCCAAACTCCGCCGCGAAGGTGGCTCCTCCCCCACCGCTGCCGCCGTTGACGGCCCGGTTCCAGCTGCTGTGGCTGAAGAAGGAAGATGGAACTTCACTAAGTTAACTCGGGCTTGGGACCGAGTCAAGCGACTCGGTCCCATTGGGAAGATGTGTTCTGAAGCTTCTGTTTCTATGTTGGTTGAATATATGAGCCCATAG

mRNA sequence

ATGTCCGGCCTTGTAGACCTCTGGACTTCCGAACAGGCCAAACTCCGCCGCGAAGGTGGCTCCTCCCCCACCGCTGCCGCCGTTGACGGCCCGGTTCCAGCTGCTGTGGCTGAAGAAGGAAGATGGAACTTCACTAAGTTAACTCGGGCTTGGGACCGAGTCAAGCGACTCGGTCCCATTGGGAAGATGTGTTCTGAAGCTTCTGTTTCTATGTTGGTTGAATATATGAGCCCATAG

Coding sequence (CDS)

ATGTCCGGCCTTGTAGACCTCTGGACTTCCGAACAGGCCAAACTCCGCCGCGAAGGTGGCTCCTCCCCCACCGCTGCCGCCGTTGACGGCCCGGTTCCAGCTGCTGTGGCTGAAGAAGGAAGATGGAACTTCACTAAGTTAACTCGGGCTTGGGACCGAGTCAAGCGACTCGGTCCCATTGGGAAGATGTGTTCTGAAGCTTCTGTTTCTATGTTGGTTGAATATATGAGCCCATAG

Protein sequence

MSGLVDLWTSEQAKLRREGGSSPTAAAVDGPVPAAVAEEGRWNFTKLTRAWDRVKRLGPIGKMCSEASVSMLVEYMSP
Homology
[Close]
BLAST of Lsi10G003250.1 vs. TrEMBL
Match: A0A0A0LIK6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G237730 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 5.7e-24
Identity = 59/78 (75.64%), Postives = 63/78 (80.77%), Query Frame = 1 

Query: 1  MSGLVDLWTSEQAKLRREGGSSPTAAAVDGPVPAAVAEEGRWNFTKLTRAWDRVKRLGPI 60
          MSGLVDLWTSEQAKLR EGGSSP A  VD      VAE+GRWN T+LTR WDRV+RLG  
Sbjct: 1  MSGLVDLWTSEQAKLRHEGGSSPAAPTVD------VAEQGRWNSTELTRVWDRVRRLGMN 60

Query: 61 GKMCSEASVSMLVEYMSP 79
          GKMCSEASV MLVE+MSP
Sbjct: 61 GKMCSEASVCMLVEFMSP 72

[Close]
BLAST of Lsi10G003250.1 vs. NCBI nr
Match: gi|700206636|gb|KGN61755.1| (hypothetical protein Csa_2G237730 [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 8.2e-24
Identity = 59/78 (75.64%), Postives = 63/78 (80.77%), Query Frame = 1 

Query: 1  MSGLVDLWTSEQAKLRREGGSSPTAAAVDGPVPAAVAEEGRWNFTKLTRAWDRVKRLGPI 60
          MSGLVDLWTSEQAKLR EGGSSP A  VD      VAE+GRWN T+LTR WDRV+RLG  
Sbjct: 1  MSGLVDLWTSEQAKLRHEGGSSPAAPTVD------VAEQGRWNSTELTRVWDRVRRLGMN 60

Query: 61 GKMCSEASVSMLVEYMSP 79
          GKMCSEASV MLVE+MSP
Sbjct: 61 GKMCSEASVCMLVEFMSP 72

The following BLAST results are available for this feature:
BLAST of Lsi10G003250.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi10G003250.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LIK6_CUCSA5.7e-2475.64Uncharacterized protein OS=Cucumis sativus GN=Csa_2G237730 PE=4 SV=1[more]
BLAST of Lsi10G003250.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi10G003250.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206636|gb|KGN61755.1|8.2e-2475.64hypothetical protein Csa_2G237730 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi10G003250Lsi10G003250gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi10G003250.1.CDS.1Lsi10G003250.1.CDS.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi10G003250.1Lsi10G003250.1-proteinpolypeptide