Lsi10G003250 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi10G003250
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr10 : 5218280 .. 5218516 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCGGCCTTGTAGACCTCTGGACTTCCGAACAGGCCAAACTCCGCCGCGAAGGTGGCTCCTCCCCCACCGCTGCCGCCGTTGACGGCCCGGTTCCAGCTGCTGTGGCTGAAGAAGGAAGATGGAACTTCACTAAGTTAACTCGGGCTTGGGACCGAGTCAAGCGACTCGGTCCCATTGGGAAGATGTGTTCTGAAGCTTCTGTTTCTATGTTGGTTGAATATATGAGCCCATAG

mRNA sequence

ATGTCCGGCCTTGTAGACCTCTGGACTTCCGAACAGGCCAAACTCCGCCGCGAAGGTGGCTCCTCCCCCACCGCTGCCGCCGTTGACGGCCCGGTTCCAGCTGCTGTGGCTGAAGAAGGAAGATGGAACTTCACTAAGTTAACTCGGGCTTGGGACCGAGTCAAGCGACTCGGTCCCATTGGGAAGATGTGTTCTGAAGCTTCTGTTTCTATGTTGGTTGAATATATGAGCCCATAG

Coding sequence (CDS)

ATGTCCGGCCTTGTAGACCTCTGGACTTCCGAACAGGCCAAACTCCGCCGCGAAGGTGGCTCCTCCCCCACCGCTGCCGCCGTTGACGGCCCGGTTCCAGCTGCTGTGGCTGAAGAAGGAAGATGGAACTTCACTAAGTTAACTCGGGCTTGGGACCGAGTCAAGCGACTCGGTCCCATTGGGAAGATGTGTTCTGAAGCTTCTGTTTCTATGTTGGTTGAATATATGAGCCCATAG

Protein sequence

MSGLVDLWTSEQAKLRREGGSSPTAAAVDGPVPAAVAEEGRWNFTKLTRAWDRVKRLGPIGKMCSEASVSMLVEYMSP
Homology
[Close]
BLAST of Lsi10G003250 vs. TrEMBL
Match: A0A0A0LIK6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G237730 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 5.7e-24
Identity = 59/78 (75.64%), Postives = 63/78 (80.77%), Query Frame = 1 

Query: 1  MSGLVDLWTSEQAKLRREGGSSPTAAAVDGPVPAAVAEEGRWNFTKLTRAWDRVKRLGPI 60
          MSGLVDLWTSEQAKLR EGGSSP A  VD      VAE+GRWN T+LTR WDRV+RLG  
Sbjct: 1  MSGLVDLWTSEQAKLRHEGGSSPAAPTVD------VAEQGRWNSTELTRVWDRVRRLGMN 60

Query: 61 GKMCSEASVSMLVEYMSP 79
          GKMCSEASV MLVE+MSP
Sbjct: 61 GKMCSEASVCMLVEFMSP 72

[Close]
BLAST of Lsi10G003250 vs. NCBI nr
Match: gi|700206636|gb|KGN61755.1| (hypothetical protein Csa_2G237730 [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 8.2e-24
Identity = 59/78 (75.64%), Postives = 63/78 (80.77%), Query Frame = 1 

Query: 1  MSGLVDLWTSEQAKLRREGGSSPTAAAVDGPVPAAVAEEGRWNFTKLTRAWDRVKRLGPI 60
          MSGLVDLWTSEQAKLR EGGSSP A  VD      VAE+GRWN T+LTR WDRV+RLG  
Sbjct: 1  MSGLVDLWTSEQAKLRHEGGSSPAAPTVD------VAEQGRWNSTELTRVWDRVRRLGMN 60

Query: 61 GKMCSEASVSMLVEYMSP 79
          GKMCSEASV MLVE+MSP
Sbjct: 61 GKMCSEASVCMLVEFMSP 72

The following BLAST results are available for this feature:
BLAST of Lsi10G003250 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi10G003250 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LIK6_CUCSA5.7e-2475.64Uncharacterized protein OS=Cucumis sativus GN=Csa_2G237730 PE=4 SV=1[more]
BLAST of Lsi10G003250 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi10G003250 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206636|gb|KGN61755.1|8.2e-2475.64hypothetical protein Csa_2G237730 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G003250.1Lsi10G003250.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi10G003250Csa2G237730Cucumber (Chinese Long) v2culsiB093
Lsi10G003250Cla010283Watermelon (97103) v1lsiwmB043
Lsi10G003250MELO3C021932Melon (DHL92) v3.5.1lsimeB057
Lsi10G003250ClCG09G017700Watermelon (Charleston Gray)lsiwcgB034
Lsi10G003250MELO3C021932.2Melon (DHL92) v3.6.1lsimedB059
Lsi10G003250Bhi10G001674Wax gourdlsiwgoB080
Lsi10G003250CsaV3_2G014310Cucumber (Chinese Long) v3cuclsiB104
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi10G003250Cucumber (Gy14) v2cgyblsiB086
Lsi10G003250Cucumber (Gy14) v2cgyblsiB389
Lsi10G003250Cucumber (Gy14) v2cgyblsiB459
Lsi10G003250Melon (DHL92) v3.6.1lsimedB083
Lsi10G003250Silver-seed gourdcarlsiB185
Lsi10G003250Silver-seed gourdcarlsiB731
Lsi10G003250Silver-seed gourdcarlsiB808
Lsi10G003250Cucumber (Chinese Long) v3cuclsiB451
Lsi10G003250Watermelon (97103) v2lsiwmbB039
Lsi10G003250Watermelon (97103) v2lsiwmbB056
Lsi10G003250Watermelon (97103) v2lsiwmbB070
Lsi10G003250Wax gourdlsiwgoB062
Lsi10G003250Bottle gourd (USVL1VR-Ls)lsilsiB021
Lsi10G003250Bottle gourd (USVL1VR-Ls)lsilsiB028
Lsi10G003250Cucumber (Gy14) v1cgylsiB123
Lsi10G003250Cucumber (Gy14) v1cgylsiB145
Lsi10G003250Cucumber (Gy14) v1cgylsiB360
Lsi10G003250Cucurbita maxima (Rimu)cmalsiB087
Lsi10G003250Cucurbita maxima (Rimu)cmalsiB469
Lsi10G003250Cucurbita maxima (Rimu)cmalsiB507
Lsi10G003250Cucurbita maxima (Rimu)cmalsiB548
Lsi10G003250Cucurbita moschata (Rifu)cmolsiB079
Lsi10G003250Cucurbita moschata (Rifu)cmolsiB454
Lsi10G003250Cucurbita moschata (Rifu)cmolsiB491
Lsi10G003250Cucurbita moschata (Rifu)cmolsiB533
Lsi10G003250Cucurbita pepo (Zucchini)cpelsiB195
Lsi10G003250Cucurbita pepo (Zucchini)cpelsiB220
Lsi10G003250Cucurbita pepo (Zucchini)cpelsiB525
Lsi10G003250Cucurbita pepo (Zucchini)cpelsiB589
Lsi10G003250Wild cucumber (PI 183967)cpilsiB091
Lsi10G003250Wild cucumber (PI 183967)cpilsiB502
Lsi10G003250Cucumber (Chinese Long) v2culsiB492
Lsi10G003250Watermelon (Charleston Gray)lsiwcgB057
Lsi10G003250Watermelon (97103) v1lsiwmB062
Lsi10G003250Watermelon (97103) v1lsiwmB079