Lsi10G002140.1 (mRNA) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi10G002140.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr10 : 3501973 .. 3506839 (-)
Sequence length588
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAAGTTATTTATGATCCTCCTTTCTGAGGAAAAGGTTCTGTTCCCTGGCAAGCTGGCTTTTAGCGATTGTGCAGTTCATTTGGCTGGAAAGTAGTATAGTGTGCAAGGCTAGGTAAATCATGAGAAGTGGGAAGATATTTAGGATCAATGCACTTTAATGGTTCCTTTTTCACTTGCCCTTTATATTATACTACCCAAAGTTGGTGTGCAGGGTCTTGTTTGTGGAGGTCCTTTTCTTTGTACTTTCCATTGTCCGAAGAAAAGTTGGTTTCCAATGTTGTTTGTTTGTTTGTTTTTAACCTCAAAATGTATCTGATATGGCTGTTTTTCATTCAATTATGCAGGATATAGGACATCAGTTGATTCACAACCTCTATTTCTATCACTGCAACCGAACTGTGTTCCTGTGAAATTGATGAGGTTCATTATGTCTTTTGTATTTCCATCATCATCCGGGCAATGTTTCTCAAATATCTATGACCACCAGCCATCATGATTGAGTATTTCATCTTTCCCTTCCCTCTTCGATGATGCCTTTTTGAGCTATCATCATTCTTGAGACGGACTTGGGTCTTCTCTATTATATCTTTCCATTTCAACTCCCAGGGCTTACTGGTGCTGAGTTGAAAGAAGTTGAGACTTCACATATAATGAGAGCTGCCATTGCTTGTAGCTCGGAAATCTGCTGGTACACTCCGATAGGCATTAATATATTGATTTAGAAAGTTAGAGACCTAAAGTTCTTGGAAGTCGCATGGTCACATAGAATGTCCTATTGTAATATTTCTTCAATGTTGCATAGGGGTTTGTAAGATATGTATTTTTATTTGTTCATTTTTACAGGAACTGTTTGAAATTTGGAGGAAGGAAAAAAGGAAAAACAGAATTGTGTCTTCAAAATAGTAGCAAGAATACTTCTTGCATGCTCCTCTTTGCTGACAATTCAACGATATTGAAGGCATTTTCAAGGCATTTCATGGGCATTTTAAATGCTTCAGGTGAGTAGTTATCTTTCTCTTCATACTTTTCTATTACATGCTCAATATCATGGAGTACACTCATGAGGACAATGGTAGCCTGAATTTCGATTTTCTACTTTTCTTTTCAAAAGAAAGACCATACACAAATTATATAATATGTTTTTGATCCTCGTGTCATTTATAGAAGAGACGAGACTTCTTATGTTTTACCTTTTTCTTCCTTATTGAGGCCTTGAGCCCTTGATTGCATCTCAATTAAAATGAAACTAATTCGCCAGCATCTACCGTCTGACTGTTGTGTTATTCTCACCGTTTGTATTGATTTATGTTTCCACAGACTCAGGCAGGCAGTCCATGCTTTAATGCTGACATGGCACTTCTTCAGTAATCGAGGAGTCTCATTCATAAGGTTTAGTTACTCATTTAGTCTCTTATTTTATCATGTTCCGAGTTCTCTTATATTTTGATGTCTTGTTGGTGGCATAAGGTTAAAGTTTGAACAAAATTGTCTGTCTGTGTTGATTGTTGAGCATATCTTTATAGCATCTTGTCAAACTTTGTCTTATATTATCTTAAAACCAAGGGGAAAGACGACATTTTCTTGTCAATTTCCAGGAAAAAGATGTTTGGACATTACTAAGAGCAATTTACTCTTAGCCTTAAACCTGCCTAATTCTTATTGAACGATGATGGAATGACTTTACAGACATTGCGATGAGGGAAGCAGCTGAAAGAATAAGCCTAATATTATAACAGAGTAAATTGCTCTTAATAAATTCATTTGGTTTCTAATTGTGAGATCTGTGTGGAGCCGCTTCTTTAAGAAGTTTGGTTTTGTGCTTCCTCGTGAGGGGTTGTTAGAGAATTGATTGGAGAGTTCCTCCTCCATCTGTCTTTCAGTGAGAAAGATCATTTATGGTATGTTGCGATATGTGTTTTGATATGGGACCTTTGGGGTGAGAGAAATTACTGAAGTTTTAGAGGTGTGGAGGACTATTGTGATGTTTGAACCTTGGTGAGGTTTCATGTTTCTCTATAGGCGTTAACTTCAAAGACTCTCTATAGGCAACGTTTTACTTAGTTGGAACCCCAATCTGTAGTAGGGTTTTTGTGGGCTCAGTCTTTTATTTTGTGATCCTTGACAATCGGATGCGTTAATGCTATAATCATATCAGTAACTATAGATCCATAAGATTTTATCGCTACCATATCTGCATAACCTGGACTCATACTAGATGATAACGATTTTTTGCTGAAAGAAAGAACAAATTTCTAGGAATGTGCAGAGCTAAGACATGCTGTTGTTGAGTGGCAGCAAAGAGAAGTATTGTTTGCCCTTGTATTCTTTCATTTATTCTCAATGAAAGCAATTGTTTCTATAAAAGAAAAATTGAAAGAATAATATTGTCATCATTCTCTCATTATGAGCTCACTGAAGGTTCTAGAATTTCTGACGCCAGCTCATCCAGTCAGGCAATCTGAATTTTGAAATGTCATGTTTGTTACTAGCTTAACATCTCTGTCATACACAATTGTTTTTTGAGATCTCTAGGACATTGATGAATGTTCATTTTTTACTTGCAGACTGCAATGACAAAGTTTGCATCGAGTTGGATGGAGAAAATCTGGATCCAAAGTACTTACTGGTGAGTATTTTCAATGGCTTAATACATGATTGCATCATCTCAATTGTCTTACGGTGACCGTCTTTGATTGTAATATATGTTATGTATTCAATTGCTTTAGTAACATTTTTTTATAGGTCAATGCCTCATATATACGATAACTTAACATATTTTTGTTCAAGTACTTGTACTATTAATCTCGAAGTAAGAGGCTAGCCATCTATTTATATAGGCTATTTTAGTTCCTGATTTAAGATCTGAGTTTTGGAACTTAATTAAGGTAAAAAGACTTACAAATAAATTACACCTTAGCATATTATTCAAAATCAATGGGAATGTGCTTGACGTTTGAGATTTTGGACATGAAATCTGGAAATTTAAGGTCTTGTTTGGTAATCATTTGATTTTTAGTTTTTTGAAAATTAAGCATATTTTCTCTCAATTTTTTATAATGATTTTGATTTTTGTCTTTCTTAAGTAAAAGAGTTGACTTATTAGCTAAAATTAAAAAAACAAACAAGTTTTTGAAAATTCCTTTTTTTAGTTTTCAAAACTTGAATTCGTTTAAACCAGGTAAAGATAATGTTTATAGGCTTAATAAAAAGGTAAACGTTATTTGATTTCAAATGAAATATAATGAAATATTTGTAGAAGTTACTTGAAATTATTTGTGAATAACTTTTGATTGGTATATGAGATATCTCTAATTGATTGACGACTTATTAAATACAACATAATTTCATACAATATAATTTCTATAAATTAATAATCTCTAAAATAATAAAAACACCAACTATTTTCTTCATTTGGTAGATTTTGATTTTTTTTTTTGAGTAATTGTTTGTTAAAAATATTTTCAAATATAGCAAAATATTTGCTATATTGATAAATATTTTGACTCATTTTGCTACATTTGAAAACAACCTCAATTATCCTTTTTTTTTTTTAGTATAAAAATTTTAATAAATAAAAAAATAGCATTTTAATTCTTATAGCACATTCTTGATTTACTAACCTAAAGAAATGGTATTTTAACCTTATTATTAATATTATTAGTGTTTTAGAATTTGGCTTAGTAAAAAAAACATACCAATTTTAAAAACAAAAACTAAAAACAAGATAAGAGCTATTTACCTAGAAACATATATACCACATTACCACTTTGGGTTTAAGTACATAATCTATCTTTCATAATTAGGAAACAATATGATTCAAACTCAAAATATTGCACACATTGAGCTTGCCTTGTGTAAATTGCTGAAATAATTTCACAGCTCCTCATAATGAAGATTGATATGCAATTGAGAACTTTCTGTACTTGTATATATTGAAATAACACTTTTAATTGATAAAATGAAAAGAGGTTAATGCTCAAAAGTACAACACCAAAGAGTAAACAAGAATGAAAAAAAAAAAGGATAAAAAGAACAATAATACAAAAGTAAGTTAGGAGGGTAACATAAAATTATTTCAATTAAGATAAATATCTTAAATAGTAGATCCTGCAATGCTTTTGGAGAGAGAGCACTATGAAGAGGCCTTCAGACGAAAAGAACCAAACCGATCATCCACGATAAAGTCTTATTATGAAAAACCCTTTGATTTGATTGCCTTCAAACAAGGGTTTAACCGAATTGAGGACTTTCTAAATCAAATATGGGAGTCAAATAGCATAGGCACAAGAGTACAACTTTCAAGTTTAAACACCATACTCATCAACTAAGGCTTTGCCTGAGGACCTAACATTTACCATTCCTTCCAAAATTGGAAAAACACTATAGAGAATGTTGAGCCAACGAACCTGACACGATTCAACTGCTTGGATTAAGCCTAGTTGTAGGTTCAAAATCTCCACATGTTTGAACTACAATCCTGAAAGAAAAAAATCCATAAAGAAAAGAACCGAGGAGCCAGAAAAAGTTCAAAAGTTCATAAAATGTTACAAAAGCCTAGCATCACCACCACCATCAGCAAGAAGCTACTTCTGACAGATCCGTGCATCTCAAATCAGAACTTAAACGATAGCAACTCAGAAGGGAGACTGCAAATTACCTGGAAACTTGCTGAGTTATCAAACTTGCGAAGTAAAGCTCGACATGGAGGACATCATCAAAGTAGCTGTGCTTTCTATGTAGTCTATTTAGTATGTAGTTTTTTGTCTTCTGGATGGTGAGACCTCCAGAGGTGTTAACACTGGGAGGTCAAACTAAAACAGCTTCAATATGTACCTTCCTTCAAGGAGCCAACACCGATTGA

mRNA sequence

ATGGAGGAAGATATAGGACATCAGTTGATTCACAACCTCTATTTCTATCACTGCAACCGAACTGTGTTCCTGAACTGTTTGAAATTTGGAGGAAGGAAAAAAGGAAAAACAGAATTGTGTCTTCAAAATAGTAGCAAGAATACTTCTTGCATGCTCCTCTTTGCTGACAATTCAACGATATTGAAGGCATTTTCAAGGCATTTCATGGGCATTTTAAATGCTTCAGACTGCAATGACAAAGTTTGCATCGAGTTGGATGGAGAAAATCTGGATCCAAAGTACTTACTGCCTAGCATCACCACCACCATCAGCAAGAAGCTACTTCTGACAGATCCGTGCATCTCAAATCAGAACTTAAACGATAGCAACTCAGAAGGGAGACTGCAAATTACCTGGAAACTTGCTGAGTTATCAAACTTGCGAAGTAAAGCTCGACATGGAGGACATCATCAAAGTAGCTGTGCTTTCTATGTAGTCTATTTATTTTTTGTCTTCTGGATGGTGAGACCTCCAGAGGTGTTAACACTGGGAGGTCAAACTAAAACAGCTTCAATATGTACCTTCCTTCAAGGAGCCAACACCGATTGA

Coding sequence (CDS)

ATGGAGGAAGATATAGGACATCAGTTGATTCACAACCTCTATTTCTATCACTGCAACCGAACTGTGTTCCTGAACTGTTTGAAATTTGGAGGAAGGAAAAAAGGAAAAACAGAATTGTGTCTTCAAAATAGTAGCAAGAATACTTCTTGCATGCTCCTCTTTGCTGACAATTCAACGATATTGAAGGCATTTTCAAGGCATTTCATGGGCATTTTAAATGCTTCAGACTGCAATGACAAAGTTTGCATCGAGTTGGATGGAGAAAATCTGGATCCAAAGTACTTACTGCCTAGCATCACCACCACCATCAGCAAGAAGCTACTTCTGACAGATCCGTGCATCTCAAATCAGAACTTAAACGATAGCAACTCAGAAGGGAGACTGCAAATTACCTGGAAACTTGCTGAGTTATCAAACTTGCGAAGTAAAGCTCGACATGGAGGACATCATCAAAGTAGCTGTGCTTTCTATGTAGTCTATTTATTTTTTGTCTTCTGGATGGTGAGACCTCCAGAGGTGTTAACACTGGGAGGTCAAACTAAAACAGCTTCAATATGTACCTTCCTTCAAGGAGCCAACACCGATTGA

Protein sequence

MEEDIGHQLIHNLYFYHCNRTVFLNCLKFGGRKKGKTELCLQNSSKNTSCMLLFADNSTILKAFSRHFMGILNASDCNDKVCIELDGENLDPKYLLPSITTTISKKLLLTDPCISNQNLNDSNSEGRLQITWKLAELSNLRSKARHGGHHQSSCAFYVVYLFFVFWMVRPPEVLTLGGQTKTASICTFLQGANTD
Homology
[Close]
BLAST of Lsi10G002140.1 vs. TrEMBL
Match: A0A0A0LQS5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G431180 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-09
Identity = 38/62 (61.29%), Postives = 45/62 (72.58%), Query Frame = 1 

Query: 32  RKKGKTELCLQNSSKNTSCMLLFADNSTILKAFSRHFMGILNASDCNDKVCIELDGENLD 91
           ++KGK E  LQ  SK TSCMLLFADN+T L AFS+HFMGIL ASD + KV IE + E+  
Sbjct: 63  KEKGKIESSLQIRSKKTSCMLLFADNATRLTAFSKHFMGILKASDYSVKVRIEFNEESQS 122

Query: 92  PK 94
            K
Sbjct: 123 KK 124

[Close]
BLAST of Lsi10G002140.1 vs. NCBI nr
Match: gi|700208230|gb|KGN63349.1| (hypothetical protein Csa_2G431180 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 1.7e-09
Identity = 38/62 (61.29%), Postives = 45/62 (72.58%), Query Frame = 1 

Query: 32  RKKGKTELCLQNSSKNTSCMLLFADNSTILKAFSRHFMGILNASDCNDKVCIELDGENLD 91
           ++KGK E  LQ  SK TSCMLLFADN+T L AFS+HFMGIL ASD + KV IE + E+  
Sbjct: 63  KEKGKIESSLQIRSKKTSCMLLFADNATRLTAFSKHFMGILKASDYSVKVRIEFNEESQS 122

Query: 92  PK 94
            K
Sbjct: 123 KK 124

The following BLAST results are available for this feature:
BLAST of Lsi10G002140.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi10G002140.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQS5_CUCSA1.2e-0961.29Uncharacterized protein OS=Cucumis sativus GN=Csa_2G431180 PE=4 SV=1[more]
BLAST of Lsi10G002140.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi10G002140.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208230|gb|KGN63349.1|1.7e-0961.29hypothetical protein Csa_2G431180 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi10G002140Lsi10G002140gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi10G002140.1Lsi10G002140.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi10G002140.1.CDS.6Lsi10G002140.1.CDS.6CDS
Lsi10G002140.1.CDS.5Lsi10G002140.1.CDS.5CDS
Lsi10G002140.1.CDS.4Lsi10G002140.1.CDS.4CDS
Lsi10G002140.1.CDS.3Lsi10G002140.1.CDS.3CDS
Lsi10G002140.1.CDS.2Lsi10G002140.1.CDS.2CDS
Lsi10G002140.1.CDS.1Lsi10G002140.1.CDS.1CDS