Lsi10G002140 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi10G002140
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr10 : 3501973 .. 3506839 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAAGTTATTTATGATCCTCCTTTCTGAGGAAAAGGTTCTGTTCCCTGGCAAGCTGGCTTTTAGCGATTGTGCAGTTCATTTGGCTGGAAAGTAGTATAGTGTGCAAGGCTAGGTAAATCATGAGAAGTGGGAAGATATTTAGGATCAATGCACTTTAATGGTTCCTTTTTCACTTGCCCTTTATATTATACTACCCAAAGTTGGTGTGCAGGGTCTTGTTTGTGGAGGTCCTTTTCTTTGTACTTTCCATTGTCCGAAGAAAAGTTGGTTTCCAATGTTGTTTGTTTGTTTGTTTTTAACCTCAAAATGTATCTGATATGGCTGTTTTTCATTCAATTATGCAGGATATAGGACATCAGTTGATTCACAACCTCTATTTCTATCACTGCAACCGAACTGTGTTCCTGTGAAATTGATGAGGTTCATTATGTCTTTTGTATTTCCATCATCATCCGGGCAATGTTTCTCAAATATCTATGACCACCAGCCATCATGATTGAGTATTTCATCTTTCCCTTCCCTCTTCGATGATGCCTTTTTGAGCTATCATCATTCTTGAGACGGACTTGGGTCTTCTCTATTATATCTTTCCATTTCAACTCCCAGGGCTTACTGGTGCTGAGTTGAAAGAAGTTGAGACTTCACATATAATGAGAGCTGCCATTGCTTGTAGCTCGGAAATCTGCTGGTACACTCCGATAGGCATTAATATATTGATTTAGAAAGTTAGAGACCTAAAGTTCTTGGAAGTCGCATGGTCACATAGAATGTCCTATTGTAATATTTCTTCAATGTTGCATAGGGGTTTGTAAGATATGTATTTTTATTTGTTCATTTTTACAGGAACTGTTTGAAATTTGGAGGAAGGAAAAAAGGAAAAACAGAATTGTGTCTTCAAAATAGTAGCAAGAATACTTCTTGCATGCTCCTCTTTGCTGACAATTCAACGATATTGAAGGCATTTTCAAGGCATTTCATGGGCATTTTAAATGCTTCAGGTGAGTAGTTATCTTTCTCTTCATACTTTTCTATTACATGCTCAATATCATGGAGTACACTCATGAGGACAATGGTAGCCTGAATTTCGATTTTCTACTTTTCTTTTCAAAAGAAAGACCATACACAAATTATATAATATGTTTTTGATCCTCGTGTCATTTATAGAAGAGACGAGACTTCTTATGTTTTACCTTTTTCTTCCTTATTGAGGCCTTGAGCCCTTGATTGCATCTCAATTAAAATGAAACTAATTCGCCAGCATCTACCGTCTGACTGTTGTGTTATTCTCACCGTTTGTATTGATTTATGTTTCCACAGACTCAGGCAGGCAGTCCATGCTTTAATGCTGACATGGCACTTCTTCAGTAATCGAGGAGTCTCATTCATAAGGTTTAGTTACTCATTTAGTCTCTTATTTTATCATGTTCCGAGTTCTCTTATATTTTGATGTCTTGTTGGTGGCATAAGGTTAAAGTTTGAACAAAATTGTCTGTCTGTGTTGATTGTTGAGCATATCTTTATAGCATCTTGTCAAACTTTGTCTTATATTATCTTAAAACCAAGGGGAAAGACGACATTTTCTTGTCAATTTCCAGGAAAAAGATGTTTGGACATTACTAAGAGCAATTTACTCTTAGCCTTAAACCTGCCTAATTCTTATTGAACGATGATGGAATGACTTTACAGACATTGCGATGAGGGAAGCAGCTGAAAGAATAAGCCTAATATTATAACAGAGTAAATTGCTCTTAATAAATTCATTTGGTTTCTAATTGTGAGATCTGTGTGGAGCCGCTTCTTTAAGAAGTTTGGTTTTGTGCTTCCTCGTGAGGGGTTGTTAGAGAATTGATTGGAGAGTTCCTCCTCCATCTGTCTTTCAGTGAGAAAGATCATTTATGGTATGTTGCGATATGTGTTTTGATATGGGACCTTTGGGGTGAGAGAAATTACTGAAGTTTTAGAGGTGTGGAGGACTATTGTGATGTTTGAACCTTGGTGAGGTTTCATGTTTCTCTATAGGCGTTAACTTCAAAGACTCTCTATAGGCAACGTTTTACTTAGTTGGAACCCCAATCTGTAGTAGGGTTTTTGTGGGCTCAGTCTTTTATTTTGTGATCCTTGACAATCGGATGCGTTAATGCTATAATCATATCAGTAACTATAGATCCATAAGATTTTATCGCTACCATATCTGCATAACCTGGACTCATACTAGATGATAACGATTTTTTGCTGAAAGAAAGAACAAATTTCTAGGAATGTGCAGAGCTAAGACATGCTGTTGTTGAGTGGCAGCAAAGAGAAGTATTGTTTGCCCTTGTATTCTTTCATTTATTCTCAATGAAAGCAATTGTTTCTATAAAAGAAAAATTGAAAGAATAATATTGTCATCATTCTCTCATTATGAGCTCACTGAAGGTTCTAGAATTTCTGACGCCAGCTCATCCAGTCAGGCAATCTGAATTTTGAAATGTCATGTTTGTTACTAGCTTAACATCTCTGTCATACACAATTGTTTTTTGAGATCTCTAGGACATTGATGAATGTTCATTTTTTACTTGCAGACTGCAATGACAAAGTTTGCATCGAGTTGGATGGAGAAAATCTGGATCCAAAGTACTTACTGGTGAGTATTTTCAATGGCTTAATACATGATTGCATCATCTCAATTGTCTTACGGTGACCGTCTTTGATTGTAATATATGTTATGTATTCAATTGCTTTAGTAACATTTTTTTATAGGTCAATGCCTCATATATACGATAACTTAACATATTTTTGTTCAAGTACTTGTACTATTAATCTCGAAGTAAGAGGCTAGCCATCTATTTATATAGGCTATTTTAGTTCCTGATTTAAGATCTGAGTTTTGGAACTTAATTAAGGTAAAAAGACTTACAAATAAATTACACCTTAGCATATTATTCAAAATCAATGGGAATGTGCTTGACGTTTGAGATTTTGGACATGAAATCTGGAAATTTAAGGTCTTGTTTGGTAATCATTTGATTTTTAGTTTTTTGAAAATTAAGCATATTTTCTCTCAATTTTTTATAATGATTTTGATTTTTGTCTTTCTTAAGTAAAAGAGTTGACTTATTAGCTAAAATTAAAAAAACAAACAAGTTTTTGAAAATTCCTTTTTTTAGTTTTCAAAACTTGAATTCGTTTAAACCAGGTAAAGATAATGTTTATAGGCTTAATAAAAAGGTAAACGTTATTTGATTTCAAATGAAATATAATGAAATATTTGTAGAAGTTACTTGAAATTATTTGTGAATAACTTTTGATTGGTATATGAGATATCTCTAATTGATTGACGACTTATTAAATACAACATAATTTCATACAATATAATTTCTATAAATTAATAATCTCTAAAATAATAAAAACACCAACTATTTTCTTCATTTGGTAGATTTTGATTTTTTTTTTTGAGTAATTGTTTGTTAAAAATATTTTCAAATATAGCAAAATATTTGCTATATTGATAAATATTTTGACTCATTTTGCTACATTTGAAAACAACCTCAATTATCCTTTTTTTTTTTTAGTATAAAAATTTTAATAAATAAAAAAATAGCATTTTAATTCTTATAGCACATTCTTGATTTACTAACCTAAAGAAATGGTATTTTAACCTTATTATTAATATTATTAGTGTTTTAGAATTTGGCTTAGTAAAAAAAACATACCAATTTTAAAAACAAAAACTAAAAACAAGATAAGAGCTATTTACCTAGAAACATATATACCACATTACCACTTTGGGTTTAAGTACATAATCTATCTTTCATAATTAGGAAACAATATGATTCAAACTCAAAATATTGCACACATTGAGCTTGCCTTGTGTAAATTGCTGAAATAATTTCACAGCTCCTCATAATGAAGATTGATATGCAATTGAGAACTTTCTGTACTTGTATATATTGAAATAACACTTTTAATTGATAAAATGAAAAGAGGTTAATGCTCAAAAGTACAACACCAAAGAGTAAACAAGAATGAAAAAAAAAAAGGATAAAAAGAACAATAATACAAAAGTAAGTTAGGAGGGTAACATAAAATTATTTCAATTAAGATAAATATCTTAAATAGTAGATCCTGCAATGCTTTTGGAGAGAGAGCACTATGAAGAGGCCTTCAGACGAAAAGAACCAAACCGATCATCCACGATAAAGTCTTATTATGAAAAACCCTTTGATTTGATTGCCTTCAAACAAGGGTTTAACCGAATTGAGGACTTTCTAAATCAAATATGGGAGTCAAATAGCATAGGCACAAGAGTACAACTTTCAAGTTTAAACACCATACTCATCAACTAAGGCTTTGCCTGAGGACCTAACATTTACCATTCCTTCCAAAATTGGAAAAACACTATAGAGAATGTTGAGCCAACGAACCTGACACGATTCAACTGCTTGGATTAAGCCTAGTTGTAGGTTCAAAATCTCCACATGTTTGAACTACAATCCTGAAAGAAAAAAATCCATAAAGAAAAGAACCGAGGAGCCAGAAAAAGTTCAAAAGTTCATAAAATGTTACAAAAGCCTAGCATCACCACCACCATCAGCAAGAAGCTACTTCTGACAGATCCGTGCATCTCAAATCAGAACTTAAACGATAGCAACTCAGAAGGGAGACTGCAAATTACCTGGAAACTTGCTGAGTTATCAAACTTGCGAAGTAAAGCTCGACATGGAGGACATCATCAAAGTAGCTGTGCTTTCTATGTAGTCTATTTAGTATGTAGTTTTTTGTCTTCTGGATGGTGAGACCTCCAGAGGTGTTAACACTGGGAGGTCAAACTAAAACAGCTTCAATATGTACCTTCCTTCAAGGAGCCAACACCGATTGA

mRNA sequence

ATGGAGGAAGATATAGGACATCAGTTGATTCACAACCTCTATTTCTATCACTGCAACCGAACTGTGTTCCTGAACTGTTTGAAATTTGGAGGAAGGAAAAAAGGAAAAACAGAATTGTGTCTTCAAAATAGTAGCAAGAATACTTCTTGCATGCTCCTCTTTGCTGACAATTCAACGATATTGAAGGCATTTTCAAGGCATTTCATGGGCATTTTAAATGCTTCAGACTGCAATGACAAAGTTTGCATCGAGTTGGATGGAGAAAATCTGGATCCAAAGTACTTACTGCCTAGCATCACCACCACCATCAGCAAGAAGCTACTTCTGACAGATCCGTGCATCTCAAATCAGAACTTAAACGATAGCAACTCAGAAGGGAGACTGCAAATTACCTGGAAACTTGCTGAGTTATCAAACTTGCGAAGTAAAGCTCGACATGGAGGACATCATCAAAGTAGCTGTGCTTTCTATGTAGTCTATTTATTTTTTGTCTTCTGGATGGTGAGACCTCCAGAGGTGTTAACACTGGGAGGTCAAACTAAAACAGCTTCAATATGTACCTTCCTTCAAGGAGCCAACACCGATTGA

Coding sequence (CDS)

ATGGAGGAAGATATAGGACATCAGTTGATTCACAACCTCTATTTCTATCACTGCAACCGAACTGTGTTCCTGAACTGTTTGAAATTTGGAGGAAGGAAAAAAGGAAAAACAGAATTGTGTCTTCAAAATAGTAGCAAGAATACTTCTTGCATGCTCCTCTTTGCTGACAATTCAACGATATTGAAGGCATTTTCAAGGCATTTCATGGGCATTTTAAATGCTTCAGACTGCAATGACAAAGTTTGCATCGAGTTGGATGGAGAAAATCTGGATCCAAAGTACTTACTGCCTAGCATCACCACCACCATCAGCAAGAAGCTACTTCTGACAGATCCGTGCATCTCAAATCAGAACTTAAACGATAGCAACTCAGAAGGGAGACTGCAAATTACCTGGAAACTTGCTGAGTTATCAAACTTGCGAAGTAAAGCTCGACATGGAGGACATCATCAAAGTAGCTGTGCTTTCTATGTAGTCTATTTATTTTTTGTCTTCTGGATGGTGAGACCTCCAGAGGTGTTAACACTGGGAGGTCAAACTAAAACAGCTTCAATATGTACCTTCCTTCAAGGAGCCAACACCGATTGA

Protein sequence

MEEDIGHQLIHNLYFYHCNRTVFLNCLKFGGRKKGKTELCLQNSSKNTSCMLLFADNSTILKAFSRHFMGILNASDCNDKVCIELDGENLDPKYLLPSITTTISKKLLLTDPCISNQNLNDSNSEGRLQITWKLAELSNLRSKARHGGHHQSSCAFYVVYLFFVFWMVRPPEVLTLGGQTKTASICTFLQGANTD
Homology
[Close]
BLAST of Lsi10G002140 vs. TrEMBL
Match: A0A0A0LQS5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G431180 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-09
Identity = 38/62 (61.29%), Postives = 45/62 (72.58%), Query Frame = 1 

Query: 32  RKKGKTELCLQNSSKNTSCMLLFADNSTILKAFSRHFMGILNASDCNDKVCIELDGENLD 91
           ++KGK E  LQ  SK TSCMLLFADN+T L AFS+HFMGIL ASD + KV IE + E+  
Sbjct: 63  KEKGKIESSLQIRSKKTSCMLLFADNATRLTAFSKHFMGILKASDYSVKVRIEFNEESQS 122

Query: 92  PK 94
            K
Sbjct: 123 KK 124

[Close]
BLAST of Lsi10G002140 vs. NCBI nr
Match: gi|700208230|gb|KGN63349.1| (hypothetical protein Csa_2G431180 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 1.7e-09
Identity = 38/62 (61.29%), Postives = 45/62 (72.58%), Query Frame = 1 

Query: 32  RKKGKTELCLQNSSKNTSCMLLFADNSTILKAFSRHFMGILNASDCNDKVCIELDGENLD 91
           ++KGK E  LQ  SK TSCMLLFADN+T L AFS+HFMGIL ASD + KV IE + E+  
Sbjct: 63  KEKGKIESSLQIRSKKTSCMLLFADNATRLTAFSKHFMGILKASDYSVKVRIEFNEESQS 122

Query: 92  PK 94
            K
Sbjct: 123 KK 124

The following BLAST results are available for this feature:
BLAST of Lsi10G002140 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi10G002140 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQS5_CUCSA1.2e-0961.29Uncharacterized protein OS=Cucumis sativus GN=Csa_2G431180 PE=4 SV=1[more]
BLAST of Lsi10G002140 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi10G002140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208230|gb|KGN63349.1|1.7e-0961.29hypothetical protein Csa_2G431180 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G002140.1Lsi10G002140.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi10G002140Csa2G431180Cucumber (Chinese Long) v2culsiB094
Lsi10G002140Cla97C02G034470Watermelon (97103) v2lsiwmbB054
Lsi10G002140CsGy2G026780Cucumber (Gy14) v2cgyblsiB087
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi10G002140Cucumber (Gy14) v1cgylsiB424
Lsi10G002140Cucurbita maxima (Rimu)cmalsiB507
Lsi10G002140Cucurbita maxima (Rimu)cmalsiB548
Lsi10G002140Cucurbita moschata (Rifu)cmolsiB491
Lsi10G002140Cucurbita moschata (Rifu)cmolsiB533
Lsi10G002140Cucurbita pepo (Zucchini)cpelsiB220
Lsi10G002140Cucurbita pepo (Zucchini)cpelsiB589
Lsi10G002140Wild cucumber (PI 183967)cpilsiB092
Lsi10G002140Melon (DHL92) v3.5.1lsimeB053
Lsi10G002140Watermelon (Charleston Gray)lsiwcgB055
Lsi10G002140Watermelon (97103) v1lsiwmB068
Lsi10G002140Melon (DHL92) v3.6.1lsimedB054
Lsi10G002140Silver-seed gourdcarlsiB870
Lsi10G002140Silver-seed gourdcarlsiB961
Lsi10G002140Cucumber (Chinese Long) v3cuclsiB105
Lsi10G002140Wax gourdlsiwgoB069