Lsi09G016440.1 (mRNA) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGCATGTTCTAAACACTACTTTTTATTTATTTAAGTTTCCTCCCTAATTTTTATGCTTTTTTTTCATGGTATATTTTTGTGTATTTTTATTTCAATAAACTACTTATTATTATCCCTCAACGTATCGAAGGGAGCATTTGGCCTACTGAGTGAAGTTAGTAAGCTTAGAGATAGTAAATTTGTGTTTGGAATGTAGAGTTGTAAGATAGAATTTTTCGATAATTGTGAAAAGTAGATTAAGAGAAAAAAAATGAAGTTACTCAATAAATGTAGAAAGTAAAGATAGAAGAGAAGATAAAATTTCTCGATAAATGTGAAAAAGTAAATGATGGAAATATGGAGTTTTCGATAAATGTGCAAACTTTAACCGTATTTACTATTGAAGTTGAGTTGTTTACAGCAATTTAAGAAGTTAGTAGGCCAAATGACCTCTAATAAGTGTAATGTCAATGTGCACTTTGTTCGTACGTGCAGTATGAAGTACTTGTGATTTTTATCGTGATGAAATAAACATTACACTTAACTAATAAGAGAAAAAAAGTACTCATTTCATATGACTTAACACTAAAATTTACTTGATTTTAAGTTTTTTTTTTTTTTTTTTTTTTTTTATAAAGGGAAATAATGCCATCCCTGTTCTATGCGTAGCAAGGAATGTTGCCTGCAATGTTAGAGGTGGTTTTTTCAAGTAAGATTCAGAAGACTGCTAAAGTTCAAATGGACATGAATTCTACCATGCTTATTCTTAATATTTGCAAATTAAGGTTTTAGCTCTGGAAGATGGTCCATGTTCATGCATGTTATCAGTTTTCTTTTGTTAATTGCGGCGTTACTCTGATTTCAGGGAATTTGATGAGGTCCTACTGCAAAAAATTTCTGATATTTCATATGAAGATGGTGTCAACGATATTCCCTCTCCTCCTGATGTGAGCAACTTTCTCGTCTCAGAGGTCAGTTGGGATTCCTTCCCAAATTCTTTTCCCCTAAAATAATCAAATTTAGTTTGATAATGAGGTCATGTTGTAATTAAATTTAGTTTTATTGCTTTTGTTTCTTGACTAAATGCTTCATTCTTTTTCCTTCTTATTTGTTTTTCAGGATGAATACTCTCTTTCTAATGGAAACAAAGATATGCCAACTTTTGATGGTATGCCAGACATGGAAGTCGATAGAAGAATGAAGGTACTGACAAAGATCGGTCACTGATTGAGGTCATAAGTAAACTTTCATTAGCATATACCAGGGAACTAATTAGGTCAAG ATGCATGGAAATAATGCCATCCCTGTTCTATGCGTAGCAAGGAATGTTGCCTGCAATGTTAGAGGTGATGGTGTCAACGATATTCCCTCTCCTCCTGATGTGAGCAACTTTCTCGTCTCAGAGGATGAATACTCTCTTTCTAATGGAAACAAAGATATGCCAACTTTTGATGGTATGCCAGACATGGAAGTCGATAGAAGAATGAAGGTACTGACAAAGATCGGTCACTGATTGAGGTCATAAGTAAACTTTCATTAGCATATACCAGGGAACTAATTAGGTCAAG ATGCATGGAAATAATGCCATCCCTGTTCTATGCGTAGCAAGGAATGTTGCCTGCAATGTTAGAGGTGATGGTGTCAACGATATTCCCTCTCCTCCTGATGTGAGCAACTTTCTCGTCTCAGAGGATGAATACTCTCTTTCTAATGGAAACAAAGATATGCCAACTTTTGATGGTATGCCAGACATGGAAGTCGATAGAAGAATGAAGGTACTGACAAAGATCGGTCACTGA MHGNNAIPVLCVARNVACNVRGDGVNDIPSPPDVSNFLVSEDEYSLSNGNKDMPTFDGMPDMEVDRRMKVLTKIGH
BLAST of Lsi09G016440.1 vs. Swiss-Prot
Match: CPL1_ARATH (RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana GN=CPL1 PE=1 SV=1) HSP 1 Score: 82.0 bits (201), Expect = 3.0e-15 Identity = 45/84 (53.57%), Postives = 52/84 (61.90%), Query Frame = 1
BLAST of Lsi09G016440.1 vs. Swiss-Prot
Match: CPL2_ARATH (RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana GN=CPL2 PE=1 SV=3) HSP 1 Score: 60.8 bits (146), Expect = 7.2e-09 Identity = 37/91 (40.66%), Postives = 46/91 (50.55%), Query Frame = 1
BLAST of Lsi09G016440.1 vs. TrEMBL
Match: A0A0A0KLF7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G517200 PE=4 SV=1) HSP 1 Score: 125.2 bits (313), Expect = 3.5e-26 Identity = 63/87 (72.41%), Postives = 66/87 (75.86%), Query Frame = 1
BLAST of Lsi09G016440.1 vs. TrEMBL
Match: W9S207_9ROSA (RNA polymerase II C-terminal domain phosphatase-like 1 OS=Morus notabilis GN=L484_012111 PE=4 SV=1) HSP 1 Score: 98.2 bits (243), Expect = 4.5e-18 Identity = 49/86 (56.98%), Postives = 57/86 (66.28%), Query Frame = 1
BLAST of Lsi09G016440.1 vs. TrEMBL
Match: A0A068TW46_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00029207001 PE=4 SV=1) HSP 1 Score: 97.1 bits (240), Expect = 1.0e-17 Identity = 50/86 (58.14%), Postives = 58/86 (67.44%), Query Frame = 1
BLAST of Lsi09G016440.1 vs. TrEMBL
Match: A0A0D2RDP0_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_010G255100 PE=4 SV=1) HSP 1 Score: 96.7 bits (239), Expect = 1.3e-17 Identity = 49/86 (56.98%), Postives = 55/86 (63.95%), Query Frame = 1
BLAST of Lsi09G016440.1 vs. TrEMBL
Match: A0A0B0PKT0_GOSAR (RNA polymerase II C-terminal domain phosphatase-like 1 OS=Gossypium arboreum GN=F383_04930 PE=4 SV=1) HSP 1 Score: 96.7 bits (239), Expect = 1.3e-17 Identity = 49/86 (56.98%), Postives = 54/86 (62.79%), Query Frame = 1
BLAST of Lsi09G016440.1 vs. TAIR10
Match: AT4G21670.1 (AT4G21670.1 C-terminal domain phosphatase-like 1) HSP 1 Score: 82.0 bits (201), Expect = 1.7e-16 Identity = 45/84 (53.57%), Postives = 52/84 (61.90%), Query Frame = 1
BLAST of Lsi09G016440.1 vs. TAIR10
Match: AT5G01270.2 (AT5G01270.2 carboxyl-terminal domain (ctd) phosphatase-like 2) HSP 1 Score: 60.8 bits (146), Expect = 4.1e-10 Identity = 37/91 (40.66%), Postives = 46/91 (50.55%), Query Frame = 1
BLAST of Lsi09G016440.1 vs. NCBI nr
Match: gi|659078741|ref|XP_008439881.1| (PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Cucumis melo]) HSP 1 Score: 126.3 bits (316), Expect = 2.2e-26 Identity = 63/87 (72.41%), Postives = 67/87 (77.01%), Query Frame = 1
BLAST of Lsi09G016440.1 vs. NCBI nr
Match: gi|449433867|ref|XP_004134718.1| (PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Cucumis sativus]) HSP 1 Score: 125.2 bits (313), Expect = 5.0e-26 Identity = 63/87 (72.41%), Postives = 66/87 (75.86%), Query Frame = 1
BLAST of Lsi09G016440.1 vs. NCBI nr
Match: gi|703114099|ref|XP_010100555.1| (RNA polymerase II C-terminal domain phosphatase-like 1 [Morus notabilis]) HSP 1 Score: 98.2 bits (243), Expect = 6.5e-18 Identity = 49/86 (56.98%), Postives = 57/86 (66.28%), Query Frame = 1
BLAST of Lsi09G016440.1 vs. NCBI nr
Match: gi|661896384|emb|CDO99573.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 97.1 bits (240), Expect = 1.5e-17 Identity = 50/86 (58.14%), Postives = 58/86 (67.44%), Query Frame = 1
BLAST of Lsi09G016440.1 vs. NCBI nr
Match: gi|763801662|gb|KJB68617.1| (hypothetical protein B456_010G255100, partial [Gossypium raimondii]) HSP 1 Score: 96.7 bits (239), Expect = 1.9e-17 Identity = 49/86 (56.98%), Postives = 55/86 (63.95%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
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