Lsi09G016440 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi09G016440
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionRNA polymerase II C-terminal domain phosphatase-like 1
Locationchr09 : 24741599 .. 24742860 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATGTTCTAAACACTACTTTTTATTTATTTAAGTTTCCTCCCTAATTTTTATGCTTTTTTTTCATGGTATATTTTTGTGTATTTTTATTTCAATAAACTACTTATTATTATCCCTCAACGTATCGAAGGGAGCATTTGGCCTACTGAGTGAAGTTAGTAAGCTTAGAGATAGTAAATTTGTGTTTGGAATGTAGAGTTGTAAGATAGAATTTTTCGATAATTGTGAAAAGTAGATTAAGAGAAAAAAAATGAAGTTACTCAATAAATGTAGAAAGTAAAGATAGAAGAGAAGATAAAATTTCTCGATAAATGTGAAAAAGTAAATGATGGAAATATGGAGTTTTCGATAAATGTGCAAACTTTAACCGTATTTACTATTGAAGTTGAGTTGTTTACAGCAATTTAAGAAGTTAGTAGGCCAAATGACCTCTAATAAGTGTAATGTCAATGTGCACTTTGTTCGTACGTGCAGTATGAAGTACTTGTGATTTTTATCGTGATGAAATAAACATTACACTTAACTAATAAGAGAAAAAAAGTACTCATTTCATATGACTTAACACTAAAATTTACTTGATTTTAAGTTTTTTTTTTTTTTTTTTTTTTTTTATAAAGGGAAATAATGCCATCCCTGTTCTATGCGTAGCAAGGAATGTTGCCTGCAATGTTAGAGGTGGTTTTTTCAAGTAAGATTCAGAAGACTGCTAAAGTTCAAATGGACATGAATTCTACCATGCTTATTCTTAATATTTGCAAATTAAGGTTTTAGCTCTGGAAGATGGTCCATGTTCATGCATGTTATCAGTTTTCTTTTGTTAATTGCGGCGTTACTCTGATTTCAGGGAATTTGATGAGGTCCTACTGCAAAAAATTTCTGATATTTCATATGAAGATGGTGTCAACGATATTCCCTCTCCTCCTGATGTGAGCAACTTTCTCGTCTCAGAGGTCAGTTGGGATTCCTTCCCAAATTCTTTTCCCCTAAAATAATCAAATTTAGTTTGATAATGAGGTCATGTTGTAATTAAATTTAGTTTTATTGCTTTTGTTTCTTGACTAAATGCTTCATTCTTTTTCCTTCTTATTTGTTTTTCAGGATGAATACTCTCTTTCTAATGGAAACAAAGATATGCCAACTTTTGATGGTATGCCAGACATGGAAGTCGATAGAAGAATGAAGGTACTGACAAAGATCGGTCACTGATTGAGGTCATAAGTAAACTTTCATTAGCATATACCAGGGAACTAATTAGGTCAAG

mRNA sequence

ATGCATGGAAATAATGCCATCCCTGTTCTATGCGTAGCAAGGAATGTTGCCTGCAATGTTAGAGGTGATGGTGTCAACGATATTCCCTCTCCTCCTGATGTGAGCAACTTTCTCGTCTCAGAGGATGAATACTCTCTTTCTAATGGAAACAAAGATATGCCAACTTTTGATGGTATGCCAGACATGGAAGTCGATAGAAGAATGAAGGTACTGACAAAGATCGGTCACTGATTGAGGTCATAAGTAAACTTTCATTAGCATATACCAGGGAACTAATTAGGTCAAG

Coding sequence (CDS)

ATGCATGGAAATAATGCCATCCCTGTTCTATGCGTAGCAAGGAATGTTGCCTGCAATGTTAGAGGTGATGGTGTCAACGATATTCCCTCTCCTCCTGATGTGAGCAACTTTCTCGTCTCAGAGGATGAATACTCTCTTTCTAATGGAAACAAAGATATGCCAACTTTTGATGGTATGCCAGACATGGAAGTCGATAGAAGAATGAAGGTACTGACAAAGATCGGTCACTGA

Protein sequence

MHGNNAIPVLCVARNVACNVRGDGVNDIPSPPDVSNFLVSEDEYSLSNGNKDMPTFDGMPDMEVDRRMKVLTKIGH
Homology
[Close]
BLAST of Lsi09G016440 vs. Swiss-Prot
Match: CPL1_ARATH (RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana GN=CPL1 PE=1 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.0e-15
Identity = 45/84 (53.57%), Postives = 52/84 (61.90%), Query Frame = 1 

Query: 6   AIPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSEDEYS 65
           A PVLCVARNVAC VRG                    +   DIPSPPDVS++LVSED+ S
Sbjct: 391 ATPVLCVARNVACGVRGGFFRDFDDSLLPRIAEISYENDAEDIPSPPDVSHYLVSEDDTS 450

Query: 66  LSNGNKDMPTFDGMPDMEVDRRMK 70
             NGNKD  +FDGM D EV+RR+K
Sbjct: 451 GLNGNKDPLSFDGMADTEVERRLK 474

[Close]
BLAST of Lsi09G016440 vs. Swiss-Prot
Match: CPL2_ARATH (RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana GN=CPL2 PE=1 SV=3)

HSP 1 Score: 60.8 bits (146), Expect = 7.2e-09
Identity = 37/91 (40.66%), Postives = 46/91 (50.55%), Query Frame = 1 

Query: 7   IPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSEDEYSL 66
           +P LCVARNVACNVRG                    D V ++P  PDVSN++V ED    
Sbjct: 376 VPHLCVARNVACNVRGYFFKEFDESLMSSISLVYYEDDVENLPPSPDVSNYVVIEDPGFA 435

Query: 67  SNGNKDMPTF-DGMPDMEVDRRMKVLTKIGH 77
           SNGN + P   +GM   EV+RR+       H
Sbjct: 436 SNGNINAPPINEGMCGGEVERRLNQAAAADH 466

[Close]
BLAST of Lsi09G016440 vs. TrEMBL
Match: A0A0A0KLF7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G517200 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 3.5e-26
Identity = 63/87 (72.41%), Postives = 66/87 (75.86%), Query Frame = 1 

Query: 3   GNNAIPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSED 62
           GNNAIPVLCVARNVACNVRG                    D VNDIPSPPDVSN+LVSED
Sbjct: 371 GNNAIPVLCVARNVACNVRGGFFKEFDDILLQKISDISYEDDVNDIPSPPDVSNYLVSED 430

Query: 63  EYSLSNGNKDMPTFDGMPDMEVDRRMK 70
           EYS++NGNKDMPTFDGMPDMEVDRRMK
Sbjct: 431 EYSIANGNKDMPTFDGMPDMEVDRRMK 457

[Close]
BLAST of Lsi09G016440 vs. TrEMBL
Match: W9S207_9ROSA (RNA polymerase II C-terminal domain phosphatase-like 1 OS=Morus notabilis GN=L484_012111 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.5e-18
Identity = 49/86 (56.98%), Postives = 57/86 (66.28%), Query Frame = 1 

Query: 4   NNAIPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSEDE 63
           NNA+PVLCVARNVACNVRG                    D +  IPSPPDVSN+L SED+
Sbjct: 376 NNAVPVLCVARNVACNVRGGFFKEFDDGLLQKIPEVSYEDDIKHIPSPPDVSNYLASEDD 435

Query: 64  YSLSNGNKDMPTFDGMPDMEVDRRMK 70
            S SNGN+D+P FDGM D EV+RR+K
Sbjct: 436 GSASNGNRDLPAFDGMADAEVERRLK 461

[Close]
BLAST of Lsi09G016440 vs. TrEMBL
Match: A0A068TW46_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00029207001 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.0e-17
Identity = 50/86 (58.14%), Postives = 58/86 (67.44%), Query Frame = 1 

Query: 4   NNAIPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSEDE 63
           NNAIPVLCVARNVACNVRG                    D + +IPSPPDVSN+L+SED+
Sbjct: 381 NNAIPVLCVARNVACNVRGGFFKEFDEGLLQRISEVAYEDDIKEIPSPPDVSNYLISEDD 440

Query: 64  YSLSNGNKDMPTFDGMPDMEVDRRMK 70
            S SNGNKD   FDGM D+EV+RR+K
Sbjct: 441 PSASNGNKDSLGFDGMADVEVERRLK 466

[Close]
BLAST of Lsi09G016440 vs. TrEMBL
Match: A0A0D2RDP0_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_010G255100 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.3e-17
Identity = 49/86 (56.98%), Postives = 55/86 (63.95%), Query Frame = 1 

Query: 4   NNAIPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSEDE 63
           NN IPVLCVARNVACN+RG                    D   DIPSPPDV N+LVSED+
Sbjct: 375 NNTIPVLCVARNVACNIRGGFFREYDEVLLQRIPEISYEDDTKDIPSPPDVGNYLVSEDD 434

Query: 64  YSLSNGNKDMPTFDGMPDMEVDRRMK 70
            S SNGNKD P F+GM D EV+RR+K
Sbjct: 435 SSASNGNKDQPLFNGMADAEVERRLK 460

[Close]
BLAST of Lsi09G016440 vs. TrEMBL
Match: A0A0B0PKT0_GOSAR (RNA polymerase II C-terminal domain phosphatase-like 1 OS=Gossypium arboreum GN=F383_04930 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.3e-17
Identity = 49/86 (56.98%), Postives = 54/86 (62.79%), Query Frame = 1 

Query: 4   NNAIPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSEDE 63
           NN  P+LCVARNVACNVRG                    D   DIPSPPDV N+LVSED+
Sbjct: 377 NNTTPILCVARNVACNVRGGFFREYDEVLLQRIPEISYEDDTKDIPSPPDVGNYLVSEDD 436

Query: 64  YSLSNGNKDMPTFDGMPDMEVDRRMK 70
            S SNGNKD P FDGM D EV+RR+K
Sbjct: 437 SSASNGNKDQPLFDGMADAEVERRLK 462

[Close]
BLAST of Lsi09G016440 vs. TAIR10
Match: AT4G21670.1 (AT4G21670.1 C-terminal domain phosphatase-like 1)

HSP 1 Score: 82.0 bits (201), Expect = 1.7e-16
Identity = 45/84 (53.57%), Postives = 52/84 (61.90%), Query Frame = 1 

Query: 6   AIPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSEDEYS 65
           A PVLCVARNVAC VRG                    +   DIPSPPDVS++LVSED+ S
Sbjct: 391 ATPVLCVARNVACGVRGGFFRDFDDSLLPRIAEISYENDAEDIPSPPDVSHYLVSEDDTS 450

Query: 66  LSNGNKDMPTFDGMPDMEVDRRMK 70
             NGNKD  +FDGM D EV+RR+K
Sbjct: 451 GLNGNKDPLSFDGMADTEVERRLK 474

[Close]
BLAST of Lsi09G016440 vs. TAIR10
Match: AT5G01270.2 (AT5G01270.2 carboxyl-terminal domain (ctd) phosphatase-like 2)

HSP 1 Score: 60.8 bits (146), Expect = 4.1e-10
Identity = 37/91 (40.66%), Postives = 46/91 (50.55%), Query Frame = 1 

Query: 7   IPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSEDEYSL 66
           +P LCVARNVACNVRG                    D V ++P  PDVSN++V ED    
Sbjct: 376 VPHLCVARNVACNVRGYFFKEFDESLMSSISLVYYEDDVENLPPSPDVSNYVVIEDPGFA 435

Query: 67  SNGNKDMPTF-DGMPDMEVDRRMKVLTKIGH 77
           SNGN + P   +GM   EV+RR+       H
Sbjct: 436 SNGNINAPPINEGMCGGEVERRLNQAAAADH 466

[Close]
BLAST of Lsi09G016440 vs. NCBI nr
Match: gi|659078741|ref|XP_008439881.1| (PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Cucumis melo])

HSP 1 Score: 126.3 bits (316), Expect = 2.2e-26
Identity = 63/87 (72.41%), Postives = 67/87 (77.01%), Query Frame = 1 

Query: 3   GNNAIPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSED 62
           GNNAIPVLCVARNVACNVRG                    DGVNDIPSPPDVSN+LVSED
Sbjct: 371 GNNAIPVLCVARNVACNVRGGFFKEFDDILLQKISDISYEDGVNDIPSPPDVSNYLVSED 430

Query: 63  EYSLSNGNKDMPTFDGMPDMEVDRRMK 70
           EYS++NGNKD+PTFDGMPDMEVDRRMK
Sbjct: 431 EYSIANGNKDIPTFDGMPDMEVDRRMK 457

[Close]
BLAST of Lsi09G016440 vs. NCBI nr
Match: gi|449433867|ref|XP_004134718.1| (PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 5.0e-26
Identity = 63/87 (72.41%), Postives = 66/87 (75.86%), Query Frame = 1 

Query: 3   GNNAIPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSED 62
           GNNAIPVLCVARNVACNVRG                    D VNDIPSPPDVSN+LVSED
Sbjct: 371 GNNAIPVLCVARNVACNVRGGFFKEFDDILLQKISDISYEDDVNDIPSPPDVSNYLVSED 430

Query: 63  EYSLSNGNKDMPTFDGMPDMEVDRRMK 70
           EYS++NGNKDMPTFDGMPDMEVDRRMK
Sbjct: 431 EYSIANGNKDMPTFDGMPDMEVDRRMK 457

[Close]
BLAST of Lsi09G016440 vs. NCBI nr
Match: gi|703114099|ref|XP_010100555.1| (RNA polymerase II C-terminal domain phosphatase-like 1 [Morus notabilis])

HSP 1 Score: 98.2 bits (243), Expect = 6.5e-18
Identity = 49/86 (56.98%), Postives = 57/86 (66.28%), Query Frame = 1 

Query: 4   NNAIPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSEDE 63
           NNA+PVLCVARNVACNVRG                    D +  IPSPPDVSN+L SED+
Sbjct: 376 NNAVPVLCVARNVACNVRGGFFKEFDDGLLQKIPEVSYEDDIKHIPSPPDVSNYLASEDD 435

Query: 64  YSLSNGNKDMPTFDGMPDMEVDRRMK 70
            S SNGN+D+P FDGM D EV+RR+K
Sbjct: 436 GSASNGNRDLPAFDGMADAEVERRLK 461

[Close]
BLAST of Lsi09G016440 vs. NCBI nr
Match: gi|661896384|emb|CDO99573.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-17
Identity = 50/86 (58.14%), Postives = 58/86 (67.44%), Query Frame = 1 

Query: 4   NNAIPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSEDE 63
           NNAIPVLCVARNVACNVRG                    D + +IPSPPDVSN+L+SED+
Sbjct: 381 NNAIPVLCVARNVACNVRGGFFKEFDEGLLQRISEVAYEDDIKEIPSPPDVSNYLISEDD 440

Query: 64  YSLSNGNKDMPTFDGMPDMEVDRRMK 70
            S SNGNKD   FDGM D+EV+RR+K
Sbjct: 441 PSASNGNKDSLGFDGMADVEVERRLK 466

[Close]
BLAST of Lsi09G016440 vs. NCBI nr
Match: gi|763801662|gb|KJB68617.1| (hypothetical protein B456_010G255100, partial [Gossypium raimondii])

HSP 1 Score: 96.7 bits (239), Expect = 1.9e-17
Identity = 49/86 (56.98%), Postives = 55/86 (63.95%), Query Frame = 1 

Query: 4   NNAIPVLCVARNVACNVRG--------------------DGVNDIPSPPDVSNFLVSEDE 63
           NN IPVLCVARNVACN+RG                    D   DIPSPPDV N+LVSED+
Sbjct: 375 NNTIPVLCVARNVACNIRGGFFREYDEVLLQRIPEISYEDDTKDIPSPPDVGNYLVSEDD 434

Query: 64  YSLSNGNKDMPTFDGMPDMEVDRRMK 70
            S SNGNKD P F+GM D EV+RR+K
Sbjct: 435 SSASNGNKDQPLFNGMADAEVERRLK 460

The following BLAST results are available for this feature:
BLAST of Lsi09G016440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CPL1_ARATH3.0e-1553.57RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana G... [more]
CPL2_ARATH7.2e-0940.66RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana G... [more]
BLAST of Lsi09G016440 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLF7_CUCSA3.5e-2672.41Uncharacterized protein OS=Cucumis sativus GN=Csa_6G517200 PE=4 SV=1[more]
W9S207_9ROSA4.5e-1856.98RNA polymerase II C-terminal domain phosphatase-like 1 OS=Morus notabilis GN=L48... [more]
A0A068TW46_COFCA1.0e-1758.14Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00029207001 PE=4 SV=1[more]
A0A0D2RDP0_GOSRA1.3e-1756.98Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_010G255100 PE=... [more]
A0A0B0PKT0_GOSAR1.3e-1756.98RNA polymerase II C-terminal domain phosphatase-like 1 OS=Gossypium arboreum GN=... [more]
BLAST of Lsi09G016440 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G21670.11.7e-1653.57 C-terminal domain phosphatase-like 1[more]
AT5G01270.24.1e-1040.66 carboxyl-terminal domain (ctd) phosphatase-like 2[more]
BLAST of Lsi09G016440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659078741|ref|XP_008439881.1|2.2e-2672.41PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Cucumis melo][more]
gi|449433867|ref|XP_004134718.1|5.0e-2672.41PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Cucumis sativ... [more]
gi|703114099|ref|XP_010100555.1|6.5e-1856.98RNA polymerase II C-terminal domain phosphatase-like 1 [Morus notabilis][more]
gi|661896384|emb|CDO99573.1|1.5e-1758.14unnamed protein product [Coffea canephora][more]
gi|763801662|gb|KJB68617.1|1.9e-1756.98hypothetical protein B456_010G255100, partial [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G016440.1Lsi09G016440.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR23081RNA POLYMERASE II CTD PHOSPHATASEcoord: 3..69
score: 1.8
NoneNo IPR availablePANTHERPTHR23081:SF7RNA POLYMERASE II C-TERMINAL DOMAIN PHOSPHATASE-LIKE 1coord: 3..69
score: 1.8