Lsi09G016350.1 (mRNA) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.GGACAAATAAGTCCATCAGCCTCGATCTAAAACACAGCAGAGAATAGCACTCAATTTTATATTTTCAAAATATTATTATTATTATCCAAAATTTCATCCAAATTCCAACCTTAATTAATTAATTATATTCATTCTTTTCTTATAACACAAATACACCGTCTCTCTTTTTTCTCCACCACCAAAACAAAAAAACACACACAACACCAAAAAAAAAAAAAAAAAATGAGTCAGTGTGTTCCTAATTGGGACCTCTCCGAACCGCCGCCCTCCGCCGCAGCCGACCCTTCCCCTTTCCACTCCTCATCCGCCGCTGCCGACGTCGTTCCCATGTAATTTTCTCTACTACTTCTATTTCTCTCTTTTTTTGTAAAATTTTTTAATGGGGTTTTTAAATTTTGGATTTTGGATTTTGGGTATTTTTATTTTGGGTAGGTTTGAGTATGAAGTGGCGGAGCTGACATGGGAAAATGGGCAATTGGCTATGCATGGGCTGGGGCTGCCGAGGGTAACCGGCAAAATTCCGAACGGCAGCGGCAGTGTTGGTGGTGGTGGTGGTGGTGGTTCTAAGTACACGTGGGATAATAAGCCGGCACGTGCGAGTGGCACGCTTGAGTCTTTGGTGAACCAAGGAACTCGCTATGGTAAGAATATTAGTTTTGATATTAACGCCGACGACGCCGACGATGGCGGTGCCAATGATTTGGTGCCGTGGTTTGCCGACCACCATAGGCAAACGCCGACGGCTTCCGCTGCAACGGCTATGGACGCGATGGTTCCATGCGACGGCGACAAGGCGGCGGCGGGTGGTGGCGCCGACAATTCGGCGGTGGAGTCGAGTGATATTCCTGGGGCGGCGCGTGAGGAGGACGAGGACTGTAGAGTGATCCATGGGAAACGAGCAAGGGTAGTGGCGCGTGTAGTTCACGCGTCAAGGGAGTGGAGTGGCTGCCGGAATCAGATCAGCGTGAGTGGCAGCCGTGAAAGTAGTCAGAAAGTGACGTTAAAAACTCGCGATAGGAATTTCGCCGCCGTAGCCACCACCGCGACGTCACAAGGGTCGCTTGATAATACAAGCTCGGACAAGCCGTGCGTTAAAAACACCACCATCACCACTACCACCGACGACCATGATTCTGTCTGCCATAGCACACATCAGGCAAGATTTTTATTAACTAACATCAAAATCTAA GGACAAATAAGTCCATCAGCCTCGATCTAAAACACAGCAGAGAATAGCACTCAATTTTATATTTTCAAAATATTATTATTATTATCCAAAATTTCATCCAAATTCCAACCTTAATTAATTAATTATATTCATTCTTTTCTTATAACACAAATACACCGTCTCTCTTTTTTCTCCACCACCAAAACAAAAAAACACACACAACACCAAAAAAAAAAAAAAAAAATGAGTCAGTGTGTTCCTAATTGGGACCTCTCCGAACCGCCGCCCTCCGCCGCAGCCGACCCTTCCCCTTTCCACTCCTCATCCGCCGCTGCCGACGTCGTTCCCATGTTTGAGTATGAAGTGGCGGAGCTGACATGGGAAAATGGGCAATTGGCTATGCATGGGCTGGGGCTGCCGAGGGTAACCGGCAAAATTCCGAACGGCAGCGGCAGTGTTGGTGGTGGTGGTGGTGGTGGTTCTAAGTACACGTGGGATAATAAGCCGGCACGTGCGAGTGGCACGCTTGAGTCTTTGGTGAACCAAGGAACTCGCTATGGTAAGAATATTAGTTTTGATATTAACGCCGACGACGCCGACGATGGCGGTGCCAATGATTTGGTGCCGTGGTTTGCCGACCACCATAGGCAAACGCCGACGGCTTCCGCTGCAACGGCTATGGACGCGATGGTTCCATGCGACGGCGACAAGGCGGCGGCGGGTGGTGGCGCCGACAATTCGGCGGTGGAGTCGAGTGATATTCCTGGGGCGGCGCGTGAGGAGGACGAGGACTGTAGAGTGATCCATGGGAAACGAGCAAGGGTAGTGGCGCGTGTAGTTCACGCGTCAAGGGAGTGGAGTGGCTGCCGGAATCAGATCAGCGTGAGTGGCAGCCGTGAAAGTAGTCAGAAAGTGACGTTAAAAACTCGCGATAGGAATTTCGCCGCCGTAGCCACCACCGCGACGTCACAAGGGTCGCTTGATAATACAAGCTCGGACAAGCCGTGCGTTAAAAACACCACCATCACCACTACCACCGACGACCATGATTCTGTCTGCCATAGCACACATCAGGCAAGATTTTTATTAACTAACATCAAAATCTAA ATGAGTCAGTGTGTTCCTAATTGGGACCTCTCCGAACCGCCGCCCTCCGCCGCAGCCGACCCTTCCCCTTTCCACTCCTCATCCGCCGCTGCCGACGTCGTTCCCATGTTTGAGTATGAAGTGGCGGAGCTGACATGGGAAAATGGGCAATTGGCTATGCATGGGCTGGGGCTGCCGAGGGTAACCGGCAAAATTCCGAACGGCAGCGGCAGTGTTGGTGGTGGTGGTGGTGGTGGTTCTAAGTACACGTGGGATAATAAGCCGGCACGTGCGAGTGGCACGCTTGAGTCTTTGGTGAACCAAGGAACTCGCTATGGTAAGAATATTAGTTTTGATATTAACGCCGACGACGCCGACGATGGCGGTGCCAATGATTTGGTGCCGTGGTTTGCCGACCACCATAGGCAAACGCCGACGGCTTCCGCTGCAACGGCTATGGACGCGATGGTTCCATGCGACGGCGACAAGGCGGCGGCGGGTGGTGGCGCCGACAATTCGGCGGTGGAGTCGAGTGATATTCCTGGGGCGGCGCGTGAGGAGGACGAGGACTGTAGAGTGATCCATGGGAAACGAGCAAGGGTAGTGGCGCGTGTAGTTCACGCGTCAAGGGAGTGGAGTGGCTGCCGGAATCAGATCAGCGTGAGTGGCAGCCGTGAAAGTAGTCAGAAAGTGACGTTAAAAACTCGCGATAGGAATTTCGCCGCCGTAGCCACCACCGCGACGTCACAAGGGTCGCTTGATAATACAAGCTCGGACAAGCCGTGCGTTAAAAACACCACCATCACCACTACCACCGACGACCATGATTCTGTCTGCCATAGCACACATCAGGCAAGATTTTTATTAACTAACATCAAAATCTAA MSQCVPNWDLSEPPPSAAADPSPFHSSSAAADVVPMFEYEVAELTWENGQLAMHGLGLPRVTGKIPNGSGSVGGGGGGGSKYTWDNKPARASGTLESLVNQGTRYGKNISFDINADDADDGGANDLVPWFADHHRQTPTASAATAMDAMVPCDGDKAAAGGGADNSAVESSDIPGAAREEDEDCRVIHGKRARVVARVVHASREWSGCRNQISVSGSRESSQKVTLKTRDRNFAAVATTATSQGSLDNTSSDKPCVKNTTITTTTDDHDSVCHSTHQARFLLTNIKI
BLAST of Lsi09G016350.1 vs. Swiss-Prot
Match: UNE10_ARATH (Transcription factor UNE10 OS=Arabidopsis thaliana GN=UNE10 PE=2 SV=1) HSP 1 Score: 109.8 bits (273), Expect = 5.1e-23 Identity = 104/281 (37.01%), Postives = 133/281 (47.33%), Query Frame = 1
BLAST of Lsi09G016350.1 vs. TrEMBL
Match: A0A0A0KCL1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G108570 PE=4 SV=1) HSP 1 Score: 411.0 bits (1055), Expect = 1.2e-111 Identity = 229/288 (79.51%), Postives = 242/288 (84.03%), Query Frame = 1
BLAST of Lsi09G016350.1 vs. TrEMBL
Match: A0A061E238_THECC (Basic helix-loop-helix DNA-binding superfamily protein isoform 3 OS=Theobroma cacao GN=TCM_005607 PE=4 SV=1) HSP 1 Score: 162.5 bits (410), Expect = 7.4e-37 Identity = 127/299 (42.47%), Postives = 159/299 (53.18%), Query Frame = 1
BLAST of Lsi09G016350.1 vs. TrEMBL
Match: A0A061DW91_THECC (Basic helix-loop-helix DNA-binding superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_005607 PE=4 SV=1) HSP 1 Score: 162.5 bits (410), Expect = 7.4e-37 Identity = 127/299 (42.47%), Postives = 159/299 (53.18%), Query Frame = 1
BLAST of Lsi09G016350.1 vs. TrEMBL
Match: F6GV58_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0021g02690 PE=4 SV=1) HSP 1 Score: 153.7 bits (387), Expect = 3.4e-34 Identity = 135/307 (43.97%), Postives = 163/307 (53.09%), Query Frame = 1
BLAST of Lsi09G016350.1 vs. TrEMBL
Match: V7B8J7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G144300g PE=4 SV=1) HSP 1 Score: 152.9 bits (385), Expect = 5.9e-34 Identity = 131/280 (46.79%), Postives = 158/280 (56.43%), Query Frame = 1
BLAST of Lsi09G016350.1 vs. TAIR10
Match: AT4G00050.1 (AT4G00050.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein) HSP 1 Score: 109.8 bits (273), Expect = 2.9e-24 Identity = 104/281 (37.01%), Postives = 133/281 (47.33%), Query Frame = 1
BLAST of Lsi09G016350.1 vs. NCBI nr
Match: gi|659119567|ref|XP_008459727.1| (PREDICTED: transcription factor UNE10 [Cucumis melo]) HSP 1 Score: 415.2 bits (1066), Expect = 9.1e-113 Identity = 231/287 (80.49%), Postives = 242/287 (84.32%), Query Frame = 1
BLAST of Lsi09G016350.1 vs. NCBI nr
Match: gi|778712228|ref|XP_011656866.1| (PREDICTED: transcription factor UNE10 [Cucumis sativus]) HSP 1 Score: 411.0 bits (1055), Expect = 1.7e-111 Identity = 229/288 (79.51%), Postives = 242/288 (84.03%), Query Frame = 1
BLAST of Lsi09G016350.1 vs. NCBI nr
Match: gi|590723429|ref|XP_007052181.1| (Basic helix-loop-helix DNA-binding superfamily protein isoform 3 [Theobroma cacao]) HSP 1 Score: 162.5 bits (410), Expect = 1.1e-36 Identity = 127/299 (42.47%), Postives = 159/299 (53.18%), Query Frame = 1
BLAST of Lsi09G016350.1 vs. NCBI nr
Match: gi|590723422|ref|XP_007052179.1| (Basic helix-loop-helix DNA-binding superfamily protein isoform 1 [Theobroma cacao]) HSP 1 Score: 162.5 bits (410), Expect = 1.1e-36 Identity = 127/299 (42.47%), Postives = 159/299 (53.18%), Query Frame = 1
BLAST of Lsi09G016350.1 vs. NCBI nr
Match: gi|297734538|emb|CBI16589.3| (unnamed protein product [Vitis vinifera]) HSP 1 Score: 156.4 bits (394), Expect = 7.6e-35 Identity = 137/313 (43.77%), Postives = 166/313 (53.04%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
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