Lsi09G016350 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi09G016350
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionBasic helix-loop-helix DNA-binding superfamily protein isoform 1
Locationchr09 : 24665950 .. 24667138 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGACAAATAAGTCCATCAGCCTCGATCTAAAACACAGCAGAGAATAGCACTCAATTTTATATTTTCAAAATATTATTATTATTATCCAAAATTTCATCCAAATTCCAACCTTAATTAATTAATTATATTCATTCTTTTCTTATAACACAAATACACCGTCTCTCTTTTTTCTCCACCACCAAAACAAAAAAACACACACAACACCAAAAAAAAAAAAAAAAAATGAGTCAGTGTGTTCCTAATTGGGACCTCTCCGAACCGCCGCCCTCCGCCGCAGCCGACCCTTCCCCTTTCCACTCCTCATCCGCCGCTGCCGACGTCGTTCCCATGTAATTTTCTCTACTACTTCTATTTCTCTCTTTTTTTGTAAAATTTTTTAATGGGGTTTTTAAATTTTGGATTTTGGATTTTGGGTATTTTTATTTTGGGTAGGTTTGAGTATGAAGTGGCGGAGCTGACATGGGAAAATGGGCAATTGGCTATGCATGGGCTGGGGCTGCCGAGGGTAACCGGCAAAATTCCGAACGGCAGCGGCAGTGTTGGTGGTGGTGGTGGTGGTGGTTCTAAGTACACGTGGGATAATAAGCCGGCACGTGCGAGTGGCACGCTTGAGTCTTTGGTGAACCAAGGAACTCGCTATGGTAAGAATATTAGTTTTGATATTAACGCCGACGACGCCGACGATGGCGGTGCCAATGATTTGGTGCCGTGGTTTGCCGACCACCATAGGCAAACGCCGACGGCTTCCGCTGCAACGGCTATGGACGCGATGGTTCCATGCGACGGCGACAAGGCGGCGGCGGGTGGTGGCGCCGACAATTCGGCGGTGGAGTCGAGTGATATTCCTGGGGCGGCGCGTGAGGAGGACGAGGACTGTAGAGTGATCCATGGGAAACGAGCAAGGGTAGTGGCGCGTGTAGTTCACGCGTCAAGGGAGTGGAGTGGCTGCCGGAATCAGATCAGCGTGAGTGGCAGCCGTGAAAGTAGTCAGAAAGTGACGTTAAAAACTCGCGATAGGAATTTCGCCGCCGTAGCCACCACCGCGACGTCACAAGGGTCGCTTGATAATACAAGCTCGGACAAGCCGTGCGTTAAAAACACCACCATCACCACTACCACCGACGACCATGATTCTGTCTGCCATAGCACACATCAGGCAAGATTTTTATTAACTAACATCAAAATCTAA

mRNA sequence

GGACAAATAAGTCCATCAGCCTCGATCTAAAACACAGCAGAGAATAGCACTCAATTTTATATTTTCAAAATATTATTATTATTATCCAAAATTTCATCCAAATTCCAACCTTAATTAATTAATTATATTCATTCTTTTCTTATAACACAAATACACCGTCTCTCTTTTTTCTCCACCACCAAAACAAAAAAACACACACAACACCAAAAAAAAAAAAAAAAAATGAGTCAGTGTGTTCCTAATTGGGACCTCTCCGAACCGCCGCCCTCCGCCGCAGCCGACCCTTCCCCTTTCCACTCCTCATCCGCCGCTGCCGACGTCGTTCCCATGTTTGAGTATGAAGTGGCGGAGCTGACATGGGAAAATGGGCAATTGGCTATGCATGGGCTGGGGCTGCCGAGGGTAACCGGCAAAATTCCGAACGGCAGCGGCAGTGTTGGTGGTGGTGGTGGTGGTGGTTCTAAGTACACGTGGGATAATAAGCCGGCACGTGCGAGTGGCACGCTTGAGTCTTTGGTGAACCAAGGAACTCGCTATGGTAAGAATATTAGTTTTGATATTAACGCCGACGACGCCGACGATGGCGGTGCCAATGATTTGGTGCCGTGGTTTGCCGACCACCATAGGCAAACGCCGACGGCTTCCGCTGCAACGGCTATGGACGCGATGGTTCCATGCGACGGCGACAAGGCGGCGGCGGGTGGTGGCGCCGACAATTCGGCGGTGGAGTCGAGTGATATTCCTGGGGCGGCGCGTGAGGAGGACGAGGACTGTAGAGTGATCCATGGGAAACGAGCAAGGGTAGTGGCGCGTGTAGTTCACGCGTCAAGGGAGTGGAGTGGCTGCCGGAATCAGATCAGCGTGAGTGGCAGCCGTGAAAGTAGTCAGAAAGTGACGTTAAAAACTCGCGATAGGAATTTCGCCGCCGTAGCCACCACCGCGACGTCACAAGGGTCGCTTGATAATACAAGCTCGGACAAGCCGTGCGTTAAAAACACCACCATCACCACTACCACCGACGACCATGATTCTGTCTGCCATAGCACACATCAGGCAAGATTTTTATTAACTAACATCAAAATCTAA

Coding sequence (CDS)

ATGAGTCAGTGTGTTCCTAATTGGGACCTCTCCGAACCGCCGCCCTCCGCCGCAGCCGACCCTTCCCCTTTCCACTCCTCATCCGCCGCTGCCGACGTCGTTCCCATGTTTGAGTATGAAGTGGCGGAGCTGACATGGGAAAATGGGCAATTGGCTATGCATGGGCTGGGGCTGCCGAGGGTAACCGGCAAAATTCCGAACGGCAGCGGCAGTGTTGGTGGTGGTGGTGGTGGTGGTTCTAAGTACACGTGGGATAATAAGCCGGCACGTGCGAGTGGCACGCTTGAGTCTTTGGTGAACCAAGGAACTCGCTATGGTAAGAATATTAGTTTTGATATTAACGCCGACGACGCCGACGATGGCGGTGCCAATGATTTGGTGCCGTGGTTTGCCGACCACCATAGGCAAACGCCGACGGCTTCCGCTGCAACGGCTATGGACGCGATGGTTCCATGCGACGGCGACAAGGCGGCGGCGGGTGGTGGCGCCGACAATTCGGCGGTGGAGTCGAGTGATATTCCTGGGGCGGCGCGTGAGGAGGACGAGGACTGTAGAGTGATCCATGGGAAACGAGCAAGGGTAGTGGCGCGTGTAGTTCACGCGTCAAGGGAGTGGAGTGGCTGCCGGAATCAGATCAGCGTGAGTGGCAGCCGTGAAAGTAGTCAGAAAGTGACGTTAAAAACTCGCGATAGGAATTTCGCCGCCGTAGCCACCACCGCGACGTCACAAGGGTCGCTTGATAATACAAGCTCGGACAAGCCGTGCGTTAAAAACACCACCATCACCACTACCACCGACGACCATGATTCTGTCTGCCATAGCACACATCAGGCAAGATTTTTATTAACTAACATCAAAATCTAA

Protein sequence

MSQCVPNWDLSEPPPSAAADPSPFHSSSAAADVVPMFEYEVAELTWENGQLAMHGLGLPRVTGKIPNGSGSVGGGGGGGSKYTWDNKPARASGTLESLVNQGTRYGKNISFDINADDADDGGANDLVPWFADHHRQTPTASAATAMDAMVPCDGDKAAAGGGADNSAVESSDIPGAAREEDEDCRVIHGKRARVVARVVHASREWSGCRNQISVSGSRESSQKVTLKTRDRNFAAVATTATSQGSLDNTSSDKPCVKNTTITTTTDDHDSVCHSTHQARFLLTNIKI
Homology
[Close]
BLAST of Lsi09G016350 vs. Swiss-Prot
Match: UNE10_ARATH (Transcription factor UNE10 OS=Arabidopsis thaliana GN=UNE10 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.1e-23
Identity = 104/281 (37.01%), Postives = 133/281 (47.33%), Query Frame = 1 

Query: 1   MSQCVPNWDLSEPPPSAAADPSPFHSSSAAADVVPMFEYEVAELTWENGQLAMHGLGLPR 60
           MSQCVPN  + + P +A         S+ AAD+ P+ +YEVAELTWENGQL +HGLG PR
Sbjct: 1   MSQCVPNCHIDDTPAAATTTVR----STTAADI-PILDYEVAELTWENGQLGLHGLGPPR 60

Query: 61  VTGKIPNGSGSVGGGGGGGSKYTWDNKPARASGTLESLVNQGTRYGKNISFDINADDADD 120
           VT                 +KY+       A GTLES+V+Q TR              + 
Sbjct: 61  VT--------------ASSTKYS-----TGAGGTLESIVDQATRL------------PNP 120

Query: 121 GGANDLVPWFADHHRQTPTASAATAMDAMVPCDG---DKAAAGGGADNSAVESSDIPGAA 180
              ++LVPWF  HHR   ++ AA AMDA+VPC     ++ +  GG  ++ V S       
Sbjct: 121 KPTDELVPWF--HHR---SSRAAMAMDALVPCSNLVHEQQSKPGGVGSTRVGSC------ 180

Query: 181 REEDEDCRVI-HGKRARVVARVVHASREWSGCRNQISVSGSRESSQKVTLKTRDRNFAAV 240
                D R +  GKRARV       + EWSG             SQ++T+ T D  F   
Sbjct: 181 ----SDGRTMGGGKRARV-------APEWSG-----------GGSQRLTMDTYDVGF--- 192

Query: 241 ATTATSQGSLDNTSSDKPCVKNTTITTTTDDHDSVCHSTHQ 278
             T+TS GS DN               T DDHDSVCHS  Q
Sbjct: 241 --TSTSMGSHDN---------------TIDDHDSVCHSRPQ 192

[Close]
BLAST of Lsi09G016350 vs. TrEMBL
Match: A0A0A0KCL1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G108570 PE=4 SV=1)

HSP 1 Score: 411.0 bits (1055), Expect = 1.2e-111
Identity = 229/288 (79.51%), Postives = 242/288 (84.03%), Query Frame = 1 

Query: 1   MSQCVPNWDLSEPPPS-AAADPSPFHSSSAAADVVPMFEYEVAELTWENGQLAMHGLGLP 60
           MSQCVPNWDLSEPPPS AAA   PF SSS+A DVVP+FEYEVAELTWENGQL+MHGLGLP
Sbjct: 1   MSQCVPNWDLSEPPPSSAAAGRPPFQSSSSADDVVPLFEYEVAELTWENGQLSMHGLGLP 60

Query: 61  RVTGKIPNGSGSVGGGGGGGSKYTWDNKPARASGTLESLVNQGTRYGKN-ISFDINADDA 120
           RVTGKI N     GGGGG GSKYTWDNKPARASGTLESLVNQGTR+GKN ISFDIN DD 
Sbjct: 61  RVTGKIQNS----GGGGGVGSKYTWDNKPARASGTLESLVNQGTRHGKNNISFDINTDDT 120

Query: 121 DDGGANDLVPWFADHHRQTPTASAATAMDAMVPCDGDKAAA-GGGADNSAVESSDIPGAA 180
             GGANDLVPWF+DHHRQTPTAS A   DAMVPCDG+K+A  GGG D    +SSDIP AA
Sbjct: 121 SHGGANDLVPWFSDHHRQTPTASTA---DAMVPCDGEKSATVGGGGD----KSSDIPVAA 180

Query: 181 REEDEDCRVIHGKRARVVARVVHASREWSGCRNQISVSGSRESSQKVTL-KTRDRNFAAV 240
           R+EDEDCRVIHGKR +VVARVVHA  EWS CRNQISVSG+RES QKVTL  +RDRNF AV
Sbjct: 181 RKEDEDCRVIHGKRGKVVARVVHAEGEWSSCRNQISVSGNRESGQKVTLNSSRDRNFVAV 240

Query: 241 -------ATTATSQGSLDNTSSDKPCVKNTTITTTTDDHDSVCHSTHQ 278
                  ATTATSQGSLDNTSSDKPCVKNTT+ TTTDDHDSVCHSTHQ
Sbjct: 241 DVSVGFTATTATSQGSLDNTSSDKPCVKNTTV-TTTDDHDSVCHSTHQ 276

[Close]
BLAST of Lsi09G016350 vs. TrEMBL
Match: A0A061E238_THECC (Basic helix-loop-helix DNA-binding superfamily protein isoform 3 OS=Theobroma cacao GN=TCM_005607 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 7.4e-37
Identity = 127/299 (42.47%), Postives = 159/299 (53.18%), Query Frame = 1 

Query: 1   MSQCVPNWDLSEPPPSAAADPSPFHSSSAAADVVPMFEYEVAELTWENGQLAMHGLGLPR 60
           MSQCVP+WDL + P  A A  S   +S++ A  VPM +YEVAELTWENGQLAMH LG PR
Sbjct: 1   MSQCVPSWDLDDNP--AIARHSLRSNSNSTAPDVPMLDYEVAELTWENGQLAMHSLGPPR 60

Query: 61  VTGKIPNGSGSVGGGGGGGSKYTWDNKPARASGTLESLVNQGTRYG-KNISFDINADDAD 120
           V  K  N +          SKYTWD KP RA GTLES+VNQ T +  +N+S D       
Sbjct: 61  VPAKPLNSTSP--------SKYTWD-KP-RAGGTLESIVNQATSFPYRNVSLD------- 120

Query: 121 DGGANDLVPWFADHHRQTPTA------SAATAMDAMVPC------------DGDKAAAGG 180
            GG ++LVPWF DHHR    A      SA   MDA+VPC            +  +   G 
Sbjct: 121 -GGRDELVPWF-DHHRAAVAAAAVASSSATMTMDALVPCSNRSEDRTTHVMESIRGLGGT 180

Query: 181 GADNSAVESSDIPGAAREEDEDCRVIHGKRARVVARVVHASREWSGCRNQISVSGS-RES 240
                +       G    +D+   ++ GKRAR     V  + EWS      S S +    
Sbjct: 181 CVVGCSTRVGSCSGPTGTQDDGV-LLTGKRAREAR--VSVAPEWSSKDQNASASATFGTD 240

Query: 241 SQKVTLKTRDRNFAAVATTATSQGSLDNTSSDKPCVKNTTITTTTDDHDSVCHSTHQAR 280
           SQ VT+ + +++F  V  T+TS GS +NTSS +PC K     TT DDHDSVCHS  Q +
Sbjct: 241 SQHVTVDSYEKDFG-VGFTSTSLGSPENTSSPRPCTK----ATTADDHDSVCHSRPQRK 270

[Close]
BLAST of Lsi09G016350 vs. TrEMBL
Match: A0A061DW91_THECC (Basic helix-loop-helix DNA-binding superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_005607 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 7.4e-37
Identity = 127/299 (42.47%), Postives = 159/299 (53.18%), Query Frame = 1 

Query: 1   MSQCVPNWDLSEPPPSAAADPSPFHSSSAAADVVPMFEYEVAELTWENGQLAMHGLGLPR 60
           MSQCVP+WDL + P  A A  S   +S++ A  VPM +YEVAELTWENGQLAMH LG PR
Sbjct: 1   MSQCVPSWDLDDNP--AIARHSLRSNSNSTAPDVPMLDYEVAELTWENGQLAMHSLGPPR 60

Query: 61  VTGKIPNGSGSVGGGGGGGSKYTWDNKPARASGTLESLVNQGTRYG-KNISFDINADDAD 120
           V  K  N +          SKYTWD KP RA GTLES+VNQ T +  +N+S D       
Sbjct: 61  VPAKPLNSTSP--------SKYTWD-KP-RAGGTLESIVNQATSFPYRNVSLD------- 120

Query: 121 DGGANDLVPWFADHHRQTPTA------SAATAMDAMVPC------------DGDKAAAGG 180
            GG ++LVPWF DHHR    A      SA   MDA+VPC            +  +   G 
Sbjct: 121 -GGRDELVPWF-DHHRAAVAAAAVASSSATMTMDALVPCSNRSEDRTTHVMESIRGLGGT 180

Query: 181 GADNSAVESSDIPGAAREEDEDCRVIHGKRARVVARVVHASREWSGCRNQISVSGS-RES 240
                +       G    +D+   ++ GKRAR     V  + EWS      S S +    
Sbjct: 181 CVVGCSTRVGSCSGPTGTQDDGV-LLTGKRAREAR--VSVAPEWSSKDQNASASATFGTD 240

Query: 241 SQKVTLKTRDRNFAAVATTATSQGSLDNTSSDKPCVKNTTITTTTDDHDSVCHSTHQAR 280
           SQ VT+ + +++F  V  T+TS GS +NTSS +PC K     TT DDHDSVCHS  Q +
Sbjct: 241 SQHVTVDSYEKDFG-VGFTSTSLGSPENTSSPRPCTK----ATTADDHDSVCHSRPQRK 270

[Close]
BLAST of Lsi09G016350 vs. TrEMBL
Match: F6GV58_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0021g02690 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.4e-34
Identity = 135/307 (43.97%), Postives = 163/307 (53.09%), Query Frame = 1 

Query: 1   MSQCVPNWDLSEPPPSAAADPSPF---HSSSAAADVVPMFEYEVAELTWENGQLAMHGLG 60
           MSQCVP+WD+ + P      P  F   HS+S A DV PM +YEVAELTWENGQLAMHGLG
Sbjct: 1   MSQCVPSWDIDDNP----TPPRLFLRSHSNSTAPDV-PMLDYEVAELTWENGQLAMHGLG 60

Query: 61  LPRVTGKIPNGSGSVGGGGGGGSKYTWDNKPARASGTLESLVNQGTRYGKNISFDINADD 120
            PRV  K P  S +V       SKY W+ KP RA GTLES+VNQ TR   +         
Sbjct: 61  QPRVPAK-PVASAAV-------SKYPWE-KP-RAGGTLESIVNQATRLPHH-------KP 120

Query: 121 ADDGGANDLVPWFADHHRQTPTASAATA----MDAMVPCDG--------------DKAAA 180
             +G  +DLVPW  DH R    A+AA +    MDA+VPC                D   A
Sbjct: 121 PPEGANDDLVPWL-DHQRAVAAAAAAASVAMTMDALVPCSNNNNTTNNNNPSHVMDSVPA 180

Query: 181 G----GGADNSAVESSDIPGAAREEDEDCRVIHGKRARVVARVVHASREWSGCRNQISVS 240
           G    GG  ++ V S    G A ++D+   ++ GKR RV    V ++ +WS  R+Q SV+
Sbjct: 181 GLGPCGGGSSTRVGSCS--GGATKDDD--AILPGKRERVAR--VPSTHDWSS-RDQ-SVT 240

Query: 241 GSRE---SSQKVTLKTRDRNFAAVATTATSQGSLDNTSSDKPCVKNTTITTTTDDHDSVC 280
           GS      SQ+VTL T D             GS +NTSS KPC K    T T DDHDSVC
Sbjct: 241 GSATFDLDSQQVTLDTCD------------LGSPENTSSGKPCTK----TITVDDHDSVC 260

[Close]
BLAST of Lsi09G016350 vs. TrEMBL
Match: V7B8J7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G144300g PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 5.9e-34
Identity = 131/280 (46.79%), Postives = 158/280 (56.43%), Query Frame = 1 

Query: 1   MSQCVPNWDLSEPPPS---AAADPSPFHSSSAAADVVPMFEYEVAELTWENGQLAMHGLG 60
           MSQCVP+WDL + PPS   +    S  +S+S A DV PM +YEVAELTWENGQL+MHGLG
Sbjct: 23  MSQCVPSWDLDDNPPSPRLSLRSNSNSNSNSTAPDV-PMLDYEVAELTWENGQLSMHGLG 82

Query: 61  LPRVTGKIPNGSGSVGGGGGGGSKYTWDNKPARASGTLESLVNQGTRYGKNISFDINADD 120
           LPRV  K P  +          +KYTW+ KP RASGTLES+VNQ T    +    +N D 
Sbjct: 83  LPRVPVKPPTSA---------ANKYTWE-KP-RASGTLESIVNQATSLPHSGKPTLNGDG 142

Query: 121 ADDGGANDLVPWFADHHRQTPTASAATAMDAMVPCDGDKAAAGGGADNSAVESSDIPGAA 180
              G  N LVPW  D H    TA+  T MDA+VPC   + +  G     +V S+ + G +
Sbjct: 143 GVYG--NYLVPWL-DPHGSAGTANTVT-MDALVPCSKREQSKQG---MKSVPSTCMVGCS 202

Query: 181 REEDEDCRVIHGKRARVVARVVHASREWSGCRNQISVSGSR---ESSQKVTLKTRDRNFA 240
                 C   HG +           +E SG R+Q SVSGS      S+ VTL T DR F 
Sbjct: 203 TRVGSCCG-NHGAK----------GQEMSG-RDQ-SVSGSATFGRDSKHVTLDTCDREF- 262

Query: 241 AVATTATSQGSLDNTSSDKPCVKNTTITTTTDDHDSVCHS 275
            VA T++S  SLDNTSS K C    T TTT DDHDSV HS
Sbjct: 263 GVAFTSSSINSLDNTSSAKHC----TNTTTVDDHDSVSHS 265

[Close]
BLAST of Lsi09G016350 vs. TAIR10
Match: AT4G00050.1 (AT4G00050.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 109.8 bits (273), Expect = 2.9e-24
Identity = 104/281 (37.01%), Postives = 133/281 (47.33%), Query Frame = 1 

Query: 1   MSQCVPNWDLSEPPPSAAADPSPFHSSSAAADVVPMFEYEVAELTWENGQLAMHGLGLPR 60
           MSQCVPN  + + P +A         S+ AAD+ P+ +YEVAELTWENGQL +HGLG PR
Sbjct: 1   MSQCVPNCHIDDTPAAATTTVR----STTAADI-PILDYEVAELTWENGQLGLHGLGPPR 60

Query: 61  VTGKIPNGSGSVGGGGGGGSKYTWDNKPARASGTLESLVNQGTRYGKNISFDINADDADD 120
           VT                 +KY+       A GTLES+V+Q TR              + 
Sbjct: 61  VT--------------ASSTKYS-----TGAGGTLESIVDQATRL------------PNP 120

Query: 121 GGANDLVPWFADHHRQTPTASAATAMDAMVPCDG---DKAAAGGGADNSAVESSDIPGAA 180
              ++LVPWF  HHR   ++ AA AMDA+VPC     ++ +  GG  ++ V S       
Sbjct: 121 KPTDELVPWF--HHR---SSRAAMAMDALVPCSNLVHEQQSKPGGVGSTRVGSC------ 180

Query: 181 REEDEDCRVI-HGKRARVVARVVHASREWSGCRNQISVSGSRESSQKVTLKTRDRNFAAV 240
                D R +  GKRARV       + EWSG             SQ++T+ T D  F   
Sbjct: 181 ----SDGRTMGGGKRARV-------APEWSG-----------GGSQRLTMDTYDVGF--- 192

Query: 241 ATTATSQGSLDNTSSDKPCVKNTTITTTTDDHDSVCHSTHQ 278
             T+TS GS DN               T DDHDSVCHS  Q
Sbjct: 241 --TSTSMGSHDN---------------TIDDHDSVCHSRPQ 192

[Close]
BLAST of Lsi09G016350 vs. NCBI nr
Match: gi|659119567|ref|XP_008459727.1| (PREDICTED: transcription factor UNE10 [Cucumis melo])

HSP 1 Score: 415.2 bits (1066), Expect = 9.1e-113
Identity = 231/287 (80.49%), Postives = 242/287 (84.32%), Query Frame = 1 

Query: 1   MSQCVPNWDLSEPPPSAAADPSP-FHSSSAAADVVPMFEYEVAELTWENGQLAMHGLGLP 60
           MSQCVPNWDLSEPPPS+AA   P FHSSSAA DVVP+FEYEVAELTWENGQLAMHGLGLP
Sbjct: 1   MSQCVPNWDLSEPPPSSAATGRPPFHSSSAADDVVPLFEYEVAELTWENGQLAMHGLGLP 60

Query: 61  RVTGKIPNGSGSVGGGGGGGSKYTWDNKPARASGTLESLVNQGTRYGK-NISFDINADDA 120
           RVTGK+ N SG  GGGGG GSK+TWDNKPARASGTLESLVNQGTR+GK NISFDIN DD 
Sbjct: 61  RVTGKVQN-SGGGGGGGGVGSKFTWDNKPARASGTLESLVNQGTRHGKNNISFDINTDDT 120

Query: 121 DDGGANDLVPWFADHHRQTPTASAATAMDAMVPCDGDKAAAGGGADNSAVESSDIPGAAR 180
             GGANDL PWF+DHHRQT TAS A   DAMVPCDGDK+A  GG   SA +SSDIP  AR
Sbjct: 121 AHGGANDLAPWFSDHHRQTTTASTA---DAMVPCDGDKSATAGG---SAAKSSDIPVVAR 180

Query: 181 EEDEDCRVIHGKRARVVARVVHASREWSGCRNQISVSGSRESSQKVTL-KTRDRNFAAV- 240
           EEDEDC VIHGKR RVVARVVHAS EWS CRNQISVSG+RES QKVTL  TR RNFAAV 
Sbjct: 181 EEDEDCGVIHGKRGRVVARVVHASGEWSTCRNQISVSGNRESGQKVTLNSTRVRNFAAVD 240

Query: 241 ------ATTATSQGSLDNTSSDKPCVKNTTITTTTDDHDSVCHSTHQ 278
                 ATTATSQGSLDNT+SDKPCVKNTT+ TTTDDHDSVCHSTHQ
Sbjct: 241 GSVGFTATTATSQGSLDNTTSDKPCVKNTTV-TTTDDHDSVCHSTHQ 279

[Close]
BLAST of Lsi09G016350 vs. NCBI nr
Match: gi|778712228|ref|XP_011656866.1| (PREDICTED: transcription factor UNE10 [Cucumis sativus])

HSP 1 Score: 411.0 bits (1055), Expect = 1.7e-111
Identity = 229/288 (79.51%), Postives = 242/288 (84.03%), Query Frame = 1 

Query: 1   MSQCVPNWDLSEPPPS-AAADPSPFHSSSAAADVVPMFEYEVAELTWENGQLAMHGLGLP 60
           MSQCVPNWDLSEPPPS AAA   PF SSS+A DVVP+FEYEVAELTWENGQL+MHGLGLP
Sbjct: 1   MSQCVPNWDLSEPPPSSAAAGRPPFQSSSSADDVVPLFEYEVAELTWENGQLSMHGLGLP 60

Query: 61  RVTGKIPNGSGSVGGGGGGGSKYTWDNKPARASGTLESLVNQGTRYGKN-ISFDINADDA 120
           RVTGKI N     GGGGG GSKYTWDNKPARASGTLESLVNQGTR+GKN ISFDIN DD 
Sbjct: 61  RVTGKIQNS----GGGGGVGSKYTWDNKPARASGTLESLVNQGTRHGKNNISFDINTDDT 120

Query: 121 DDGGANDLVPWFADHHRQTPTASAATAMDAMVPCDGDKAAA-GGGADNSAVESSDIPGAA 180
             GGANDLVPWF+DHHRQTPTAS A   DAMVPCDG+K+A  GGG D    +SSDIP AA
Sbjct: 121 SHGGANDLVPWFSDHHRQTPTASTA---DAMVPCDGEKSATVGGGGD----KSSDIPVAA 180

Query: 181 REEDEDCRVIHGKRARVVARVVHASREWSGCRNQISVSGSRESSQKVTL-KTRDRNFAAV 240
           R+EDEDCRVIHGKR +VVARVVHA  EWS CRNQISVSG+RES QKVTL  +RDRNF AV
Sbjct: 181 RKEDEDCRVIHGKRGKVVARVVHAEGEWSSCRNQISVSGNRESGQKVTLNSSRDRNFVAV 240

Query: 241 -------ATTATSQGSLDNTSSDKPCVKNTTITTTTDDHDSVCHSTHQ 278
                  ATTATSQGSLDNTSSDKPCVKNTT+ TTTDDHDSVCHSTHQ
Sbjct: 241 DVSVGFTATTATSQGSLDNTSSDKPCVKNTTV-TTTDDHDSVCHSTHQ 276

[Close]
BLAST of Lsi09G016350 vs. NCBI nr
Match: gi|590723429|ref|XP_007052181.1| (Basic helix-loop-helix DNA-binding superfamily protein isoform 3 [Theobroma cacao])

HSP 1 Score: 162.5 bits (410), Expect = 1.1e-36
Identity = 127/299 (42.47%), Postives = 159/299 (53.18%), Query Frame = 1 

Query: 1   MSQCVPNWDLSEPPPSAAADPSPFHSSSAAADVVPMFEYEVAELTWENGQLAMHGLGLPR 60
           MSQCVP+WDL + P  A A  S   +S++ A  VPM +YEVAELTWENGQLAMH LG PR
Sbjct: 1   MSQCVPSWDLDDNP--AIARHSLRSNSNSTAPDVPMLDYEVAELTWENGQLAMHSLGPPR 60

Query: 61  VTGKIPNGSGSVGGGGGGGSKYTWDNKPARASGTLESLVNQGTRYG-KNISFDINADDAD 120
           V  K  N +          SKYTWD KP RA GTLES+VNQ T +  +N+S D       
Sbjct: 61  VPAKPLNSTSP--------SKYTWD-KP-RAGGTLESIVNQATSFPYRNVSLD------- 120

Query: 121 DGGANDLVPWFADHHRQTPTA------SAATAMDAMVPC------------DGDKAAAGG 180
            GG ++LVPWF DHHR    A      SA   MDA+VPC            +  +   G 
Sbjct: 121 -GGRDELVPWF-DHHRAAVAAAAVASSSATMTMDALVPCSNRSEDRTTHVMESIRGLGGT 180

Query: 181 GADNSAVESSDIPGAAREEDEDCRVIHGKRARVVARVVHASREWSGCRNQISVSGS-RES 240
                +       G    +D+   ++ GKRAR     V  + EWS      S S +    
Sbjct: 181 CVVGCSTRVGSCSGPTGTQDDGV-LLTGKRAREAR--VSVAPEWSSKDQNASASATFGTD 240

Query: 241 SQKVTLKTRDRNFAAVATTATSQGSLDNTSSDKPCVKNTTITTTTDDHDSVCHSTHQAR 280
           SQ VT+ + +++F  V  T+TS GS +NTSS +PC K     TT DDHDSVCHS  Q +
Sbjct: 241 SQHVTVDSYEKDFG-VGFTSTSLGSPENTSSPRPCTK----ATTADDHDSVCHSRPQRK 270

[Close]
BLAST of Lsi09G016350 vs. NCBI nr
Match: gi|590723422|ref|XP_007052179.1| (Basic helix-loop-helix DNA-binding superfamily protein isoform 1 [Theobroma cacao])

HSP 1 Score: 162.5 bits (410), Expect = 1.1e-36
Identity = 127/299 (42.47%), Postives = 159/299 (53.18%), Query Frame = 1 

Query: 1   MSQCVPNWDLSEPPPSAAADPSPFHSSSAAADVVPMFEYEVAELTWENGQLAMHGLGLPR 60
           MSQCVP+WDL + P  A A  S   +S++ A  VPM +YEVAELTWENGQLAMH LG PR
Sbjct: 1   MSQCVPSWDLDDNP--AIARHSLRSNSNSTAPDVPMLDYEVAELTWENGQLAMHSLGPPR 60

Query: 61  VTGKIPNGSGSVGGGGGGGSKYTWDNKPARASGTLESLVNQGTRYG-KNISFDINADDAD 120
           V  K  N +          SKYTWD KP RA GTLES+VNQ T +  +N+S D       
Sbjct: 61  VPAKPLNSTSP--------SKYTWD-KP-RAGGTLESIVNQATSFPYRNVSLD------- 120

Query: 121 DGGANDLVPWFADHHRQTPTA------SAATAMDAMVPC------------DGDKAAAGG 180
            GG ++LVPWF DHHR    A      SA   MDA+VPC            +  +   G 
Sbjct: 121 -GGRDELVPWF-DHHRAAVAAAAVASSSATMTMDALVPCSNRSEDRTTHVMESIRGLGGT 180

Query: 181 GADNSAVESSDIPGAAREEDEDCRVIHGKRARVVARVVHASREWSGCRNQISVSGS-RES 240
                +       G    +D+   ++ GKRAR     V  + EWS      S S +    
Sbjct: 181 CVVGCSTRVGSCSGPTGTQDDGV-LLTGKRAREAR--VSVAPEWSSKDQNASASATFGTD 240

Query: 241 SQKVTLKTRDRNFAAVATTATSQGSLDNTSSDKPCVKNTTITTTTDDHDSVCHSTHQAR 280
           SQ VT+ + +++F  V  T+TS GS +NTSS +PC K     TT DDHDSVCHS  Q +
Sbjct: 241 SQHVTVDSYEKDFG-VGFTSTSLGSPENTSSPRPCTK----ATTADDHDSVCHSRPQRK 270

[Close]
BLAST of Lsi09G016350 vs. NCBI nr
Match: gi|297734538|emb|CBI16589.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 156.4 bits (394), Expect = 7.6e-35
Identity = 137/313 (43.77%), Postives = 166/313 (53.04%), Query Frame = 1 

Query: 1   MSQCVPNWDLSEPPPSAAADPSPF---HSSSAAADVVPMFEYEVAELTWENGQLAMHGLG 60
           MSQCVP+WD+ + P      P  F   HS+S A DV PM +YEVAELTWENGQLAMHGLG
Sbjct: 1   MSQCVPSWDIDDNP----TPPRLFLRSHSNSTAPDV-PMLDYEVAELTWENGQLAMHGLG 60

Query: 61  LPRVTGKIPNGSGSVGGGGGGGSKYTWDNKPARASGTLESLVNQGTRYGKNISFDINADD 120
            PRV  K P  S +V       SKY W+ KP RA GTLES+VNQ TR   +         
Sbjct: 61  QPRVPAK-PVASAAV-------SKYPWE-KP-RAGGTLESIVNQATRLPHH-------KP 120

Query: 121 ADDGGANDLVPWFADHHRQTPTASAATA----MDAMVPCDG--------------DKAAA 180
             +G  +DLVPW  DH R    A+AA +    MDA+VPC                D   A
Sbjct: 121 PPEGANDDLVPWL-DHQRAVAAAAAAASVAMTMDALVPCSNNNNTTNNNNPSHVMDSVPA 180

Query: 181 G----GGADNSAVESSDIPGAAREEDEDCRVIHGKRARVVARVVHASREWSGCRNQISVS 240
           G    GG  ++ V S    G A ++D+   ++ GKR RV    V ++ +WS  R+Q SV+
Sbjct: 181 GLGPCGGGSSTRVGSCS--GGATKDDD--AILPGKRERVAR--VPSTHDWSS-RDQ-SVT 240

Query: 241 GSRE---SSQKVTLKTRDRNFAAVATTATSQGSLDNTSSDKPCVKNTTITTTTDDHDSVC 286
           GS      SQ+VTL T D             GS +NTSS KPC K    T T DDHDSVC
Sbjct: 241 GSATFDLDSQQVTLDTCD------------LGSPENTSSGKPCTK----TITVDDHDSVC 266

The following BLAST results are available for this feature:
BLAST of Lsi09G016350 vs. Swiss-Prot
Match NameE-valueIdentityDescription
UNE10_ARATH5.1e-2337.01Transcription factor UNE10 OS=Arabidopsis thaliana GN=UNE10 PE=2 SV=1[more]
BLAST of Lsi09G016350 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCL1_CUCSA1.2e-11179.51Uncharacterized protein OS=Cucumis sativus GN=Csa_6G108570 PE=4 SV=1[more]
A0A061E238_THECC7.4e-3742.47Basic helix-loop-helix DNA-binding superfamily protein isoform 3 OS=Theobroma ca... [more]
A0A061DW91_THECC7.4e-3742.47Basic helix-loop-helix DNA-binding superfamily protein isoform 1 OS=Theobroma ca... [more]
F6GV58_VITVI3.4e-3443.97Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0021g02690 PE=4 SV=... [more]
V7B8J7_PHAVU5.9e-3446.79Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G144300g PE=4 SV=1[more]
BLAST of Lsi09G016350 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G00050.12.9e-2437.01 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
BLAST of Lsi09G016350 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659119567|ref|XP_008459727.1|9.1e-11380.49PREDICTED: transcription factor UNE10 [Cucumis melo][more]
gi|778712228|ref|XP_011656866.1|1.7e-11179.51PREDICTED: transcription factor UNE10 [Cucumis sativus][more]
gi|590723429|ref|XP_007052181.1|1.1e-3642.47Basic helix-loop-helix DNA-binding superfamily protein isoform 3 [Theobroma caca... [more]
gi|590723422|ref|XP_007052179.1|1.1e-3642.47Basic helix-loop-helix DNA-binding superfamily protein isoform 1 [Theobroma caca... [more]
gi|297734538|emb|CBI16589.3|7.6e-3543.77unnamed protein product [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0009567 double fertilization forming a zygote and endosperm
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0009506 plasmodesma
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G016350.1Lsi09G016350.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR12565STEROL REGULATORY ELEMENT-BINDING PROTEINcoord: 1..279
score: 1.4
NoneNo IPR availablePANTHERPTHR12565:SF173TRANSCRIPTION FACTOR UNE10coord: 1..279
score: 1.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi09G016350Cucsa.120670Cucumber (Gy14) v1cgylsiB169
Lsi09G016350CsGy6G008820Cucumber (Gy14) v2cgyblsiB366
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi09G016350Wild cucumber (PI 183967)cpilsiB404
Lsi09G016350Cucumber (Chinese Long) v2culsiB402
Lsi09G016350Melon (DHL92) v3.5.1lsimeB017
Lsi09G016350Watermelon (Charleston Gray)lsiwcgB029
Lsi09G016350Watermelon (97103) v1lsiwmB036
Lsi09G016350Melon (DHL92) v3.6.1lsimedB019
Lsi09G016350Silver-seed gourdcarlsiB545
Lsi09G016350Silver-seed gourdcarlsiB820
Lsi09G016350Cucumber (Chinese Long) v3cuclsiB424
Lsi09G016350Watermelon (97103) v2lsiwmbB026
Lsi09G016350Wax gourdlsiwgoB011
Lsi09G016350Cucurbita maxima (Rimu)cmalsiB331
Lsi09G016350Cucurbita maxima (Rimu)cmalsiB817
Lsi09G016350Cucurbita moschata (Rifu)cmolsiB320
Lsi09G016350Cucurbita moschata (Rifu)cmolsiB803
Lsi09G016350Cucurbita pepo (Zucchini)cpelsiB101
Lsi09G016350Cucurbita pepo (Zucchini)cpelsiB248