Lsi09G010890.1 (mRNA) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi09G010890.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr09 : 17279793 .. 17281716 (+)
Sequence length492
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTCGGAAGGCCTTGCATCTTCTACTCATGTAGAGCTCACGAATTTGGAGGTATATGAGTTGTTTCTAGTTTTATTTTACTTTCTATAAATCATTAAGTTTTATAATTTATGATTTTCCTAAATAAATAATTAACCGTATGTTATCTATTAAAATATCTCTAGATATAAATTCGCCAAAATTCAAATTAGGCCCTCACACTTTTTGGTTAAGCTTAAATCATTCCATTGTTAATTAAAATAATTAGTTTTCTCAGTAATCTATAAATTGGGTTGATGCTTTTTTTTTCTCCTAAAAAGAAAAATTGGGTTGATGTTTTATTTAATTTCAATTTGTATATTTGGATTATTTATTGTTTTACAGTATTTTCTAACGAGATCCCAATGAAGATTTAGAATTATTTTAATTATTAACTATATTATTATTTTTTAATACACTTTTTTTTTGTTTGAATTTCAGGATTTTGATTATATGGATTTGATTAATAATCTATGTCATTTTGATAAGCTTAGGATAGACTGTGAGAGGGCATTGCCCACTCGACCTCCTTCGTCTATGTATCCCCGTGGAGATCAAAGGTATTAAATATATATTTTTACTCTGTTTTAAGTTTATAATTTTTTTGTTTACATTTTTATTCTTTTAAATTAATTAATAATTGATATTGATGCCAAGAATTCTTTTAAGAGGATACTATACCAAAGATTGAAAGTGAGATTTTTTTTTTAAAAAAAAATTAAGGCTGAAAACAAATCTTGAATTAGCTAGGGACTAAATTGAAACAAAATTCAAAATTCAATAGTAAAAATATAATATTTTAAAACTTAAAAGGCCAAATAGAAACTAGACCAACAACGGAGAGAAAAAAATGTATTTTTCCTTAATTTTTATTAATACGGTGAACCTTCAAATTTTCATAGTGTATCTTTTGAGAGGTAATTATTAAGTTAGTATAAATATTATTTTGACTATAATACTTTTGGTTTGACTTATTTTAATATATATATATATATATATATATATATATAACTTTTGTTCATTTTAATCTTTATACTTTTAAAAATTGAAATATCAATTTTGGTCTCTTCATAAAGTGACTAATTTTGTCAATTAATTTTTAATTTTATCTAAATTCTTTCGATACAAAATTTAGCATAACACTTCATTCAAAAGTTTCCATTACGTATAAAATATGTGAGAAAAATTTATAAATATAAATTAAAATAAACAGAACTCATGTTTCATAATCGAATTAAATGCAATTGGTTATTGATCTCACGATTTAAAGTATTAATTATAATAATGGGTTTTATTTATGGTAATTTTGTTTATGTACAGTACTTGGGTTCTCACAAACAATGGATCAGATGCTGAAAATATTTGTACTGAGCTATCTGTTGAGGTAATTATGTGATTTACATAATTAAACACTTCATTTTATACAACAAATTAGGCAACAATTACCAATTAATTAAATTAAATGCAAATATATATATATACACACAATTATTATTATTTTTAGCTCCAAATTTAATTAGTTTCACATTTTTATTGCTCTATTTTTCATATTGCAGAAAAATGATAGCATTGTATATCAAAACTCGGACCATGTTCCATATTCGAATTTCGTGAGCAATGATAAAAATGAAAATCCTAATAATGACGTAAGAAAAAATAAGCAACAGATGTCTTCAAGTGACTCCGTGAATGACAAGAACAATAGTCCTAGTCGTAGTACCAAAAGAAAGAGGTCAAATTTTCTCTTTTCTTCTATCATCATCATCATCATCATCATCATCATCATCATCATCATCATATTAATAATATAATATTAATATGCAGGGAAAAGGAAAAAGTGGAAGATGGAAATAAAGCCAGGCCACGTTGCAATTGCAAGAAAAGCCAGTGCCTAAAACTGTAA

mRNA sequence

ATGTCTTCGGAAGGCCTTGCATCTTCTACTCATGTAGAGCTCACGAATTTGGAGGATTTTGATTATATGGATTTGATTAATAATCTATGTCATTTTGATAAGCTTAGGATAGACTGTGAGAGGGCATTGCCCACTCGACCTCCTTCGTCTATGTATCCCCGTGGAGATCAAAGTACTTGGGTTCTCACAAACAATGGATCAGATGCTGAAAATATTTGTACTGAGCTATCTGTTGAGAAAAATGATAGCATTGTATATCAAAACTCGGACCATGTTCCATATTCGAATTTCGTGAGCAATGATAAAAATGAAAATCCTAATAATGACGTAAGAAAAAATAAGCAACAGATGTCTTCAAGTGACTCCGTGAATGACAAGAACAATAGTCCTAGTCGTAGTACCAAAAGAAAGAGGGAAAAGGAAAAAGTGGAAGATGGAAATAAAGCCAGGCCACGTTGCAATTGCAAGAAAAGCCAGTGCCTAAAACTGTAA

Coding sequence (CDS)

ATGTCTTCGGAAGGCCTTGCATCTTCTACTCATGTAGAGCTCACGAATTTGGAGGATTTTGATTATATGGATTTGATTAATAATCTATGTCATTTTGATAAGCTTAGGATAGACTGTGAGAGGGCATTGCCCACTCGACCTCCTTCGTCTATGTATCCCCGTGGAGATCAAAGTACTTGGGTTCTCACAAACAATGGATCAGATGCTGAAAATATTTGTACTGAGCTATCTGTTGAGAAAAATGATAGCATTGTATATCAAAACTCGGACCATGTTCCATATTCGAATTTCGTGAGCAATGATAAAAATGAAAATCCTAATAATGACGTAAGAAAAAATAAGCAACAGATGTCTTCAAGTGACTCCGTGAATGACAAGAACAATAGTCCTAGTCGTAGTACCAAAAGAAAGAGGGAAAAGGAAAAAGTGGAAGATGGAAATAAAGCCAGGCCACGTTGCAATTGCAAGAAAAGCCAGTGCCTAAAACTGTAA

Protein sequence

MSSEGLASSTHVELTNLEDFDYMDLINNLCHFDKLRIDCERALPTRPPSSMYPRGDQSTWVLTNNGSDAENICTELSVEKNDSIVYQNSDHVPYSNFVSNDKNENPNNDVRKNKQQMSSSDSVNDKNNSPSRSTKRKREKEKVEDGNKARPRCNCKKSQCLKL
Homology
[Close]
BLAST of Lsi09G010890.1 vs. TrEMBL
Match: A0A0A0KVD1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G004800 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.6e-06
Identity = 44/91 (48.35%), Postives = 60/91 (65.93%), Query Frame = 1 

Query: 77  SVEKNDSIVYQN-SDHVPYSNFVSNDKNENPNNDVRKNKQQMSSSDSVNDKNN--SPSRS 136
           ++E N  I Y N +D +PY NF SN++ +NPN     + + +S   S N+ NN  + S S
Sbjct: 33  AIEINSDIEYSNWNDDIPYLNFQSNEEIQNPN-----DPEVVSLGVSTNEINNDGNSSGS 92

Query: 137 TKRKREKEKVEDGNKARP-RCNCKKSQCLKL 164
           TKRKR+K +VE+ N + P RCNCKKSQCLKL
Sbjct: 93  TKRKRKKSRVENENNSSPRRCNCKKSQCLKL 118

[Close]
BLAST of Lsi09G010890.1 vs. NCBI nr
Match: gi|659108570|ref|XP_008454271.1| (PREDICTED: protein tesmin/TSO1-like CXC 2 [Cucumis melo])

HSP 1 Score: 81.6 bits (200), Expect = 1.4e-12
Identity = 69/179 (38.55%), Postives = 94/179 (52.51%), Query Frame = 1 

Query: 1   MSSEGLASSTHVELTNLEDFDYMDLINNLCHFDKLRIDCERALPTRPPSSMYPRGDQS-- 60
           MSS+GLA+ST  E   +          NL    +L I   RALP++PPSS++ RGD S  
Sbjct: 1   MSSKGLATSTSSESEPI----------NL----ELTIGSGRALPSKPPSSIFSRGDHSQS 60

Query: 61  ----------TWVLTNNGSDAENICTELSVEKNDSIVYQNSDHVPYSNFVSNDKNENPNN 120
                          +N    +NIC  LSVEKND + Y N             KN+  NN
Sbjct: 61  NKNKEAPIGDNHSKISNFHKTQNICAGLSVEKNDGVEYHN-------------KNKKENN 120

Query: 121 DVRKNKQQMSSSDSVNDK--NNSPSRSTKRKREKEKVEDGNKARPRCNC--KKSQCLKL 164
           ++R +++Q S   S+ND   N++P+ +TKRK  K KVEDG KA P C+C  K ++CL L
Sbjct: 121 NIRDHQKQTSPIGSLNDMNYNSTPTTTTKRKSGKAKVEDGKKASPCCHCANKNTECLTL 152

The following BLAST results are available for this feature:
BLAST of Lsi09G010890.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi09G010890.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KVD1_CUCSA8.6e-0648.35Uncharacterized protein OS=Cucumis sativus GN=Csa_4G004800 PE=4 SV=1[more]
BLAST of Lsi09G010890.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi09G010890.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659108570|ref|XP_008454271.1|1.4e-1238.55PREDICTED: protein tesmin/TSO1-like CXC 2 [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi09G010890Lsi09G010890gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi09G010890.1.CDS.1Lsi09G010890.1.CDS.1CDS
Lsi09G010890.1.CDS.2Lsi09G010890.1.CDS.2CDS
Lsi09G010890.1.CDS.3Lsi09G010890.1.CDS.3CDS
Lsi09G010890.1.CDS.4Lsi09G010890.1.CDS.4CDS
Lsi09G010890.1.CDS.5Lsi09G010890.1.CDS.5CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi09G010890.1Lsi09G010890.1-proteinpolypeptide