Lsi09G010890 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi09G010890
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr09 : 17279793 .. 17281716 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTCGGAAGGCCTTGCATCTTCTACTCATGTAGAGCTCACGAATTTGGAGGTATATGAGTTGTTTCTAGTTTTATTTTACTTTCTATAAATCATTAAGTTTTATAATTTATGATTTTCCTAAATAAATAATTAACCGTATGTTATCTATTAAAATATCTCTAGATATAAATTCGCCAAAATTCAAATTAGGCCCTCACACTTTTTGGTTAAGCTTAAATCATTCCATTGTTAATTAAAATAATTAGTTTTCTCAGTAATCTATAAATTGGGTTGATGCTTTTTTTTTCTCCTAAAAAGAAAAATTGGGTTGATGTTTTATTTAATTTCAATTTGTATATTTGGATTATTTATTGTTTTACAGTATTTTCTAACGAGATCCCAATGAAGATTTAGAATTATTTTAATTATTAACTATATTATTATTTTTTAATACACTTTTTTTTTGTTTGAATTTCAGGATTTTGATTATATGGATTTGATTAATAATCTATGTCATTTTGATAAGCTTAGGATAGACTGTGAGAGGGCATTGCCCACTCGACCTCCTTCGTCTATGTATCCCCGTGGAGATCAAAGGTATTAAATATATATTTTTACTCTGTTTTAAGTTTATAATTTTTTTGTTTACATTTTTATTCTTTTAAATTAATTAATAATTGATATTGATGCCAAGAATTCTTTTAAGAGGATACTATACCAAAGATTGAAAGTGAGATTTTTTTTTTAAAAAAAAATTAAGGCTGAAAACAAATCTTGAATTAGCTAGGGACTAAATTGAAACAAAATTCAAAATTCAATAGTAAAAATATAATATTTTAAAACTTAAAAGGCCAAATAGAAACTAGACCAACAACGGAGAGAAAAAAATGTATTTTTCCTTAATTTTTATTAATACGGTGAACCTTCAAATTTTCATAGTGTATCTTTTGAGAGGTAATTATTAAGTTAGTATAAATATTATTTTGACTATAATACTTTTGGTTTGACTTATTTTAATATATATATATATATATATATATATATATAACTTTTGTTCATTTTAATCTTTATACTTTTAAAAATTGAAATATCAATTTTGGTCTCTTCATAAAGTGACTAATTTTGTCAATTAATTTTTAATTTTATCTAAATTCTTTCGATACAAAATTTAGCATAACACTTCATTCAAAAGTTTCCATTACGTATAAAATATGTGAGAAAAATTTATAAATATAAATTAAAATAAACAGAACTCATGTTTCATAATCGAATTAAATGCAATTGGTTATTGATCTCACGATTTAAAGTATTAATTATAATAATGGGTTTTATTTATGGTAATTTTGTTTATGTACAGTACTTGGGTTCTCACAAACAATGGATCAGATGCTGAAAATATTTGTACTGAGCTATCTGTTGAGGTAATTATGTGATTTACATAATTAAACACTTCATTTTATACAACAAATTAGGCAACAATTACCAATTAATTAAATTAAATGCAAATATATATATATACACACAATTATTATTATTTTTAGCTCCAAATTTAATTAGTTTCACATTTTTATTGCTCTATTTTTCATATTGCAGAAAAATGATAGCATTGTATATCAAAACTCGGACCATGTTCCATATTCGAATTTCGTGAGCAATGATAAAAATGAAAATCCTAATAATGACGTAAGAAAAAATAAGCAACAGATGTCTTCAAGTGACTCCGTGAATGACAAGAACAATAGTCCTAGTCGTAGTACCAAAAGAAAGAGGTCAAATTTTCTCTTTTCTTCTATCATCATCATCATCATCATCATCATCATCATCATCATCATCATATTAATAATATAATATTAATATGCAGGGAAAAGGAAAAAGTGGAAGATGGAAATAAAGCCAGGCCACGTTGCAATTGCAAGAAAAGCCAGTGCCTAAAACTGTAA

mRNA sequence

ATGTCTTCGGAAGGCCTTGCATCTTCTACTCATGTAGAGCTCACGAATTTGGAGGATTTTGATTATATGGATTTGATTAATAATCTATGTCATTTTGATAAGCTTAGGATAGACTGTGAGAGGGCATTGCCCACTCGACCTCCTTCGTCTATGTATCCCCGTGGAGATCAAAGTACTTGGGTTCTCACAAACAATGGATCAGATGCTGAAAATATTTGTACTGAGCTATCTGTTGAGAAAAATGATAGCATTGTATATCAAAACTCGGACCATGTTCCATATTCGAATTTCGTGAGCAATGATAAAAATGAAAATCCTAATAATGACGTAAGAAAAAATAAGCAACAGATGTCTTCAAGTGACTCCGTGAATGACAAGAACAATAGTCCTAGTCGTAGTACCAAAAGAAAGAGGGAAAAGGAAAAAGTGGAAGATGGAAATAAAGCCAGGCCACGTTGCAATTGCAAGAAAAGCCAGTGCCTAAAACTGTAA

Coding sequence (CDS)

ATGTCTTCGGAAGGCCTTGCATCTTCTACTCATGTAGAGCTCACGAATTTGGAGGATTTTGATTATATGGATTTGATTAATAATCTATGTCATTTTGATAAGCTTAGGATAGACTGTGAGAGGGCATTGCCCACTCGACCTCCTTCGTCTATGTATCCCCGTGGAGATCAAAGTACTTGGGTTCTCACAAACAATGGATCAGATGCTGAAAATATTTGTACTGAGCTATCTGTTGAGAAAAATGATAGCATTGTATATCAAAACTCGGACCATGTTCCATATTCGAATTTCGTGAGCAATGATAAAAATGAAAATCCTAATAATGACGTAAGAAAAAATAAGCAACAGATGTCTTCAAGTGACTCCGTGAATGACAAGAACAATAGTCCTAGTCGTAGTACCAAAAGAAAGAGGGAAAAGGAAAAAGTGGAAGATGGAAATAAAGCCAGGCCACGTTGCAATTGCAAGAAAAGCCAGTGCCTAAAACTGTAA

Protein sequence

MSSEGLASSTHVELTNLEDFDYMDLINNLCHFDKLRIDCERALPTRPPSSMYPRGDQSTWVLTNNGSDAENICTELSVEKNDSIVYQNSDHVPYSNFVSNDKNENPNNDVRKNKQQMSSSDSVNDKNNSPSRSTKRKREKEKVEDGNKARPRCNCKKSQCLKL
Homology
[Close]
BLAST of Lsi09G010890 vs. TrEMBL
Match: A0A0A0KVD1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G004800 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.6e-06
Identity = 44/91 (48.35%), Postives = 60/91 (65.93%), Query Frame = 1 

Query: 77  SVEKNDSIVYQN-SDHVPYSNFVSNDKNENPNNDVRKNKQQMSSSDSVNDKNN--SPSRS 136
           ++E N  I Y N +D +PY NF SN++ +NPN     + + +S   S N+ NN  + S S
Sbjct: 33  AIEINSDIEYSNWNDDIPYLNFQSNEEIQNPN-----DPEVVSLGVSTNEINNDGNSSGS 92

Query: 137 TKRKREKEKVEDGNKARP-RCNCKKSQCLKL 164
           TKRKR+K +VE+ N + P RCNCKKSQCLKL
Sbjct: 93  TKRKRKKSRVENENNSSPRRCNCKKSQCLKL 118

[Close]
BLAST of Lsi09G010890 vs. NCBI nr
Match: gi|659108570|ref|XP_008454271.1| (PREDICTED: protein tesmin/TSO1-like CXC 2 [Cucumis melo])

HSP 1 Score: 81.6 bits (200), Expect = 1.4e-12
Identity = 69/179 (38.55%), Postives = 94/179 (52.51%), Query Frame = 1 

Query: 1   MSSEGLASSTHVELTNLEDFDYMDLINNLCHFDKLRIDCERALPTRPPSSMYPRGDQS-- 60
           MSS+GLA+ST  E   +          NL    +L I   RALP++PPSS++ RGD S  
Sbjct: 1   MSSKGLATSTSSESEPI----------NL----ELTIGSGRALPSKPPSSIFSRGDHSQS 60

Query: 61  ----------TWVLTNNGSDAENICTELSVEKNDSIVYQNSDHVPYSNFVSNDKNENPNN 120
                          +N    +NIC  LSVEKND + Y N             KN+  NN
Sbjct: 61  NKNKEAPIGDNHSKISNFHKTQNICAGLSVEKNDGVEYHN-------------KNKKENN 120

Query: 121 DVRKNKQQMSSSDSVNDK--NNSPSRSTKRKREKEKVEDGNKARPRCNC--KKSQCLKL 164
           ++R +++Q S   S+ND   N++P+ +TKRK  K KVEDG KA P C+C  K ++CL L
Sbjct: 121 NIRDHQKQTSPIGSLNDMNYNSTPTTTTKRKSGKAKVEDGKKASPCCHCANKNTECLTL 152

The following BLAST results are available for this feature:
BLAST of Lsi09G010890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi09G010890 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KVD1_CUCSA8.6e-0648.35Uncharacterized protein OS=Cucumis sativus GN=Csa_4G004800 PE=4 SV=1[more]
BLAST of Lsi09G010890 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi09G010890 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659108570|ref|XP_008454271.1|1.4e-1238.55PREDICTED: protein tesmin/TSO1-like CXC 2 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G010890.1Lsi09G010890.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi09G010890Cucumber (Gy14) v1cgylsiB429
Lsi09G010890Cucumber (Gy14) v1cgylsiB430
Lsi09G010890Cucurbita maxima (Rimu)cmalsiB264
Lsi09G010890Cucurbita moschata (Rifu)cmolsiB251
Lsi09G010890Cucurbita pepo (Zucchini)cpelsiB132
Lsi09G010890Wild cucumber (PI 183967)cpilsiB086
Lsi09G010890Wild cucumber (PI 183967)cpilsiB090
Lsi09G010890Cucumber (Chinese Long) v2culsiB088
Lsi09G010890Cucumber (Chinese Long) v2culsiB091
Lsi09G010890Melon (DHL92) v3.5.1lsimeB023
Lsi09G010890Watermelon (Charleston Gray)lsiwcgB029
Lsi09G010890Watermelon (97103) v1lsiwmB040
Lsi09G010890Cucumber (Gy14) v2cgyblsiB081
Lsi09G010890Melon (DHL92) v3.6.1lsimedB025
Lsi09G010890Cucumber (Chinese Long) v3cuclsiB099
Lsi09G010890Watermelon (97103) v2lsiwmbB026
Lsi09G010890Wax gourdlsiwgoB007