Lsi09G004040.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G004040.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	PLATZ transcription factor family protein, putative
Location	chr09 : 4257550 .. 4261465 (+)
Sequence length	890

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTTAGTATCAAATGCATCTTCTTGTAGGTACTTTTGTTTGTTTGTTTATTATTAAATAGTTACAAGGTGAGGATTAAATCTATATTGACTTTTGGGATAGCAATTGATACATCATTTCATTAAGTTCTTTGAATTGACCTCTTTTTATAGGTCGTAAGTTTGACAAATCTCTACCTCTATTCGTAATTTATTTATAAATATGTATGTATAGTTGTAAGATTAGTAGACCCGATTGTCTCTAATTTATTATTATTATTATTTAACAACGTGTGGGGTGGAGAATCAAACTTCTAATCCCAAGATCGATAATACAAAGTTTATGCAAGTAAGTTGTTCATTTTAGTAGAAATAATCTATTATTAATTTGTTCGTTATTACTAAATCTTACCCATATAATATTACTGGTGTAAAGTCTATTATTTTGAGTTGTTAGTTAGTTTATCAAGTCTATTAATATGAATCGTTTATGGTATCATCAATATGCCGATGGTACCACTTCTCATCTTTGACAATTTTTTATGCAATACAAACATATCTTTCTTTCTATATCTAAATTTGTTTGCTTCTTCAATAGATTTTCTTTTTAAATAAATATTTGAATTCATAGTGGAATAAATAGCGTTACATAAGTGGGAAAAATAATTGAAGGAAGAGCCGCCTTTCATATATATGCATTTAAACCGATTAACAAATTTACAAGAGAAGAATGGGAGGAAAATACAATTGGTGTGGTCACCATTTTCCAATAATTTTATTTTTAGAAGAAAAAAAGAGAGTGTGGAATAAATGGATTAATTAATTGGCATTCTGCTGCCCTCGTGATTCTTATTAAATGTTCATCTCTCTCTCTCACAAATTCAACCCCCCCCCCAAAAAAAAAAAGTAATTAAATAAATAATTGTAATAAGTTTTTACATAGAAAGGGAGAGTTGTATTTTTTAAAATTGTGAAATTTGATGCTTTAAATACTTATGATATATTGATGAATTCAACTTCGTCAATCTCTGCTTCCACTGAGTACTTTTTTTCTGCATCATCTTTCCTTTCACATTCTCTGTTCCTTCTACAACGACCGAACATACACAAATTACAAAAAATAAAAAAAAAAAAAAATGGTCTTTTTTTCTTCTTCTTTTTTTCCCTCTTTTTTTTATACCTTTTAATTGAAGTTGTTAATGTGTTTTTGTGTGTTAATTTTACAGGTGAGTATGGTGAGAGAAGGAGAGAATAATTCAGTTCCAGAATGGCTTGAAATTCTTTTGGGAGAGAAGTTCTTTACTCCATGTTCACTTCATAAGTCTACTAAGAAGAATGACAAGACTTTCTTTTGCTTGTTCTGCCGCTCTGCTATTTGCTTCTCTTGCTTCTCTTCTCATCGCACTCATACTCTTCTCCAGGTATAGATCCTAACTTATCCGCTTAATTTTTTTTTTTTTTCTTTTAGTTCACTACGTAGATATAGCAATAAGACCCAAAGTATTAGTAAATATAACACAATGAGAAAGAATTTACAAATATAACAAAATTTAAATCAAACTTTCGAAATCTATATCAATAATATTTCATATCGCTGATAGGAGTCTATCACTAATAGATTTTGCTATATTTGTAAAAAATTTTAAAATTTGTGCTATACACTTAATTATTATTTCTAAAAGTACAAACCACTGTAATTATTCTAATAATTAAATTAGAATGCTTAAACTTAGCCTAAGTTTTTAGTTTGAGTGATGGTTTAAGTTTAATATTATAATGTGGTATACATCAATAAGGTAAGAAAGAACATTTACAATGTCAATTTGTATTTGGTAATTGTCTCTCCTTCCTTAATTAAACTTTAAATTTTGATTGAAACATATTATATTATTGTATTAATATAACCTATCAACTAAAGCTTTTGAGACGATGATTAACAGATAAGAAGATATGTGTATCATGAAGTTATACGACTAGGAGATGCTGAGAAGCTGTTGAATTGTTCTCTTATACAAGTAATATAATTATGGCTATAATATTATTATATTATATGGTTTTTAATTTAATTTTTGGGATGAAAATTCCCATAAAGTTATAATAATGTGTGTAATTTATGAATTTATGTTTAAGGGGAAATTGTGTATGTGATATTTGAAAACAGCCATACACAACAAACAGAGCAAAAGTGGTGTTTCTAAAACATAGAAGAAGGGGAAAGAGAAAAGGTTTGAGAGGAGGAGGAGGATCCGCTCATTTCTGCATCACATGCTTTCGCAACCTTCAATATCCATATCTCTTTTGCTCTCTTTCATGCAAGGTATTTTTTCTTATTCCCTTTAACTTTATTCTTTTTTTTTTTCTTTTTAATTTTCCAAAACTTCTACTAACTATAGATTTAATATAATTTTGGTTTTTTTTGTTTGTTTAATATTGGTATTTTAAACTTTTAATTTTGTGTATAGTCGTTTCATGATTTTTTTTAAAAAAAAATTGAAAGGGTAGAGATAAAATTTATAATTTAATCTATAATTTGTATAGGAATTTGCAAAATTTTACCATTTTTATAGTACGAAAAATTTAGATATGAAATTTGAATTTTGACCTCAAACGAAGAAATACATGTTACTTAGTTGCATGCATTTATGATCTTTACCAAATCATACATTTTGATATATATATAAAGTAAAATTAAAGAAAATATTCAATATGATTATTTTCACCTGTGATAGAGCTAAATGTAATCTCACTTTTTTTCTCCCTTCTTAATTTTCTTTTTCAAATTCAAAAATTTATTTTTAGGTTAAATTAAAAGTTTGGTACTTATTAAATTTTTATATTTTTGTCTATGATCATTAAAAAAATCTACAAATACTTTTTAGAGTTGAATGATGATAAACAAAAATATAAAAATTTAGTAAGTACTAAACTCTTAATTTAACCTATTTTTAGGTATAAAATCAACCGGAAAATTCACAACCATTTGTGCAGTCTGTGTGATGTGATGTATCAAGATGATTTTTTTAAAAATAATTATATGTTTTTTTGTAAACAATTAAATTTTTCTAAATATTTTTTAAAACTACAATATTAAAAAAAAAAATCCTCCTTAAACTCTAAACATAATTCTTAAAATCCTAAATTTTAAGTTTTGTGTCTAATATATATATATATATAATTTTTAATTTTATTTATTACATACCTTTGATTCATTCTACCTTTATTTTAAAATTTTATGGGACTAATTAACACGAAATTATACTTATTAGACATAAAATTTAATTTTATATCAAAAAGATTTGTTGTGATTATTAGGTAGTTCAACACAGAAAATTCTGACACTTCTATTAGATGTTGGCTGGAGTGCACTTAAGTTTTTTTCTTTCCCAAATATTAATACCATAAATACAAGGGTGGAGTTTCCACTTCCTTACCAATAATTTAAGGGTTAATGTTTAAATTGTTGTATTTTGTTGTTTTTTTTAGATCAATCAAAAGGTGAATGACAAAATTGAAATAATCAACAAACAAAAAAGGAATTATGATCATTTTCCACCGCGAAGCACAACACAAACCCAAACCCCAACCTCCGTTCTGGACGGGGATTTTCCCTCCGCTGTCTCAAAAACCGCCGCCGCCATTAAGTTAGTCAAGAAGAATCGTAACTGTGTGAAATCGTTAGCGGCGGTTCTGTACCGGCCGAGATGCTTTCCCATCTCCGATATTGCCACCGCCGCGAACCGCCGAAAGGGCGTTCCTCAAAGATCGCCGTTAACCTGATTTTTGGCTACTCTACCATATATTAATTATTATATGTTTGTTTCATTATGATATAACATAAATGTATCGGCATGTAATTAAATTTCGTATAATATGTTGTAATTATGTCCCAAAAAGCCCTTTTGGCTGATTCAATGTGTTTCAATTTTATAATCCAC

mRNA sequence

ATGATTTACAAGGTGAGTATGGTGAGAGAAGGAGAGAATAATTCAGTTCCAGAATGGCTTGAAATTCTTTTGGGAGAGAAGTTCTTTACTCCATGTTCACTTCATAAGTCTACTAAGAAGAATGACAAGACTTTCTTTTGCTTGTTCTGCCGCTCTGCTATTTGCTTCTCTTGCTTCTCTTCTCATCGCACTCATACTCTTCTCCAGATAAGAAGATATGTGTATCATGAAGTTATACGACTAGGAGATGCTGAGAAGCTGTTGAATTGTTCTCTTATACAACCATACACAACAAACAGAGCAAAAGTGGTGTTTCTAAAACATAGAAGAAGGGGAAAGAGAAAAGGTTTGAGAGGAGGAGGAGGATCCGCTCATTTCTGCATCACATGCTTTCGCAACCTTCAATATCCATATCTCTTTTGCTCTCTTTCATGCAAGATCAATCAAAAGGTGAATGACAAAATTGAAATAATCAACAAACAAAAAAGGAATTATGATCATTTTCCACCGCGAAGCACAACACAAACCCAAACCCCAACCTCCGTTCTGGACGGGGATTTTCCCTCCGCTGTCTCAAAAACCGCCGCCGCCATTAAGTTAGTCAAGAAGAATCGTAACTGTGTGAAATCGTTAGCGGCGGTTCTGTACCGGCCGAGATGCTTTCCCATCTCCGATATTGCCACCGCCGCGAACCGCCGAAAGGGCGTTCCTCAAAGATCGCCGTTAACCTGATTTTTGGCTACTCTACCATATATTAATTATTATATGTTTGTTTCATTATGATATAACATAAATGTATCGGCATGTAATTAAATTTCGTATAATATGTTGTAATTATGTCCCAAAAAGCCCTTTTGGCTGATTCAATGTGTTTCAATTTTATAATCCAC

Coding sequence (CDS)

ATGATTTACAAGGTGAGTATGGTGAGAGAAGGAGAGAATAATTCAGTTCCAGAATGGCTTGAAATTCTTTTGGGAGAGAAGTTCTTTACTCCATGTTCACTTCATAAGTCTACTAAGAAGAATGACAAGACTTTCTTTTGCTTGTTCTGCCGCTCTGCTATTTGCTTCTCTTGCTTCTCTTCTCATCGCACTCATACTCTTCTCCAGATAAGAAGATATGTGTATCATGAAGTTATACGACTAGGAGATGCTGAGAAGCTGTTGAATTGTTCTCTTATACAACCATACACAACAAACAGAGCAAAAGTGGTGTTTCTAAAACATAGAAGAAGGGGAAAGAGAAAAGGTTTGAGAGGAGGAGGAGGATCCGCTCATTTCTGCATCACATGCTTTCGCAACCTTCAATATCCATATCTCTTTTGCTCTCTTTCATGCAAGATCAATCAAAAGGTGAATGACAAAATTGAAATAATCAACAAACAAAAAAGGAATTATGATCATTTTCCACCGCGAAGCACAACACAAACCCAAACCCCAACCTCCGTTCTGGACGGGGATTTTCCCTCCGCTGTCTCAAAAACCGCCGCCGCCATTAAGTTAGTCAAGAAGAATCGTAACTGTGTGAAATCGTTAGCGGCGGTTCTGTACCGGCCGAGATGCTTTCCCATCTCCGATATTGCCACCGCCGCGAACCGCCGAAAGGGCGTTCCTCAAAGATCGCCGTTAACCTGA

Protein sequence

MIYKVSMVREGENNSVPEWLEILLGEKFFTPCSLHKSTKKNDKTFFCLFCRSAICFSCFSSHRTHTLLQIRRYVYHEVIRLGDAEKLLNCSLIQPYTTNRAKVVFLKHRRRGKRKGLRGGGGSAHFCITCFRNLQYPYLFCSLSCKINQKVNDKIEIINKQKRNYDHFPPRSTTQTQTPTSVLDGDFPSAVSKTAAAIKLVKKNRNCVKSLAAVLYRPRCFPISDIATAANRRKGVPQRSPLT

Homology

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BLAST of Lsi09G004040.1 vs. TrEMBL
Match: A0A0A0KKT3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G160750 PE=4 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 9.8e-107
Identity = 200/252 (79.37%), Postives = 214/252 (84.92%), Query Frame = 1


Query: 7   MVREGENNSVPEWLEILLGEKFFTPCSLHKSTKKNDKTFFCLFCRSAICFSCFSSHRTHT 66
           MVRE ENNSVPEW+EILLGEKFFTPCSLH S KKNDKTFFCLFCRSAICFSCFSSHRTH 
Sbjct: 1   MVREVENNSVPEWVEILLGEKFFTPCSLHISCKKNDKTFFCLFCRSAICFSCFSSHRTHA 60

Query: 67  LLQIRRYVYHEVIRLGDAEKLLNCSLIQPYTTNRAKVVFLKHRRRGKRKGLR-------- 126
           LLQIRRYVYHEV+ LGDAEKL+NCSL+QPYTTNRAKVVFLK RRRGKR+GLR        
Sbjct: 61  LLQIRRYVYHEVVLLGDAEKLMNCSLVQPYTTNRAKVVFLKERRRGKRRGLRSSSSSSSS 120

Query: 127 GGGG------SAHFCITCFRNLQYPYLFCSLSCKINQKVNDKIEIINKQKRNYDHFPPRS 186
           GGGG      + + CITCFRNLQYPYLFCSLSCKINQKVN+KIEIINKQKR Y++ PPR+
Sbjct: 121 GGGGWRSNNNNGNLCITCFRNLQYPYLFCSLSCKINQKVNEKIEIINKQKRKYENLPPRT 180

Query: 187 TTQTQTPTSVLDGDFPSAVSKTAAAIKLVKK-NRNCVKSLAAVLYRPRCFPISDIATAAN 244
           TT+ QTPTSVLD DF S     AAA+KL KK NR+CVKSLAAVL RPRCFPIS  ATA N
Sbjct: 181 TTENQTPTSVLDRDFSS-----AAAVKLAKKNNRSCVKSLAAVLCRPRCFPISGFATAVN 240

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BLAST of Lsi09G004040.1 vs. TrEMBL
Match: F6HP95_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0154g00150 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 2.2e-45
Identity = 113/242 (46.69%), Postives = 137/242 (56.61%), Query Frame = 1


Query: 16  VPEWLEILLGEKFFTPCSLHKSTKKNDKTFFCLFCRSAICFSCFSSHRTHTLLQIRRYVY 75
           +P WLEILLGEKFF  C +H+  KKN+K  FCL C ++IC  C   HR H LLQIRRYVY
Sbjct: 8   IPHWLEILLGEKFFNACVVHECAKKNEKNIFCLDCCTSICPHCLLPHRHHRLLQIRRYVY 67

Query: 76  HEVIRLGDAEKLLNCSLIQPYTTNRAKVVFLKHRRRGKRKGLRGGGGSAHFCITCFRNLQ 135
           H+VIRL DA+KL++CSL+Q YTTN AKVVFL  R        R   GS + C TC R+LQ
Sbjct: 68  HDVIRLDDAQKLMDCSLVQSYTTNSAKVVFLNQRPMS-----RPFRGSGNLCYTCDRSLQ 127

Query: 136 YPYLFCSLSCKINQKVNDKIEIINKQKRNYDHFPPRSTTQTQTPTSVLDGDF----PSAV 195
            PYLFCSL+CK+   +   I ++                +  TP SVLD        S  
Sbjct: 128 DPYLFCSLACKVRFALKFIINLLRFLHLARGEAFSELDDRQMTPESVLDSPVSLRTSSGS 187

Query: 196 SKTAAAI-----------KLVKKNRNCVKSLAAVLYRPRCFPISDIATAANRRKGVPQRS 243
           S T  A+           + VKK R+ V S+    +RP   P SD A   NRRKGVP RS
Sbjct: 188 SSTGGAVSCRALACTATTEFVKKKRSSV-SVPRFPFRPILSPTSDNAGGINRRKGVPHRS 243

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BLAST of Lsi09G004040.1 vs. TrEMBL
Match: V4T0E5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021750mg PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 4.8e-45
Identity = 107/238 (44.96%), Postives = 145/238 (60.92%), Query Frame = 1


Query: 16  VPEWLEILLGEKFFTPCSLHKSTKKNDKTFFCLFCRSAICFSCFSSHRTHTLLQIRRYVY 75
           +P WL+ILL EKFF+PC++H+   KNDK  FCL C  +IC  C  +HR H LLQ+RRYVY
Sbjct: 37  IPRWLQILLAEKFFSPCAVHECANKNDKNIFCLDCCMSICLHCSHTHRPHHLLQVRRYVY 96

Query: 76  HEVIRLGDAEKLLNCSLIQPYTTNRAKVVFLKHRRRGKRKGLRGGGGSAHFCITCFRNLQ 135
           H+V+RLGDA+KL+NCS +QPYTTNRAKV+FL   +R   + L+  G   +FC+ C R+LQ
Sbjct: 97  HDVLRLGDAQKLMNCSFVQPYTTNRAKVIFL--HKRPMTRPLKSNG---NFCMKCDRSLQ 156

Query: 136 YPYLFCSLSCKINQKVNDKIEIINKQKRN--YDHFPPRSTTQTQ------TPTSVLDGDF 195
             +LFCS+SCKI+  V  K  I+NK   +  +D     S+++ +      TP S+L  DF
Sbjct: 157 DSFLFCSISCKIHHLVTSKSGIVNKSTVSLLFDRATSVSSSEIEDAAGQMTPASLL--DF 216

Query: 196 PSAVSKTAAAIKLVKKNRNCVKSLAAVLYRP---RCFPISDIATAANRRKGVPQRSPL 243
           P++  +  A    V +     K    VL  P   RC       +  NRRK VP R+PL
Sbjct: 217 PASSLRAYACTAAVDQPVAGKKKKRRVLLNPSRQRC-------STTNRRKSVPNRAPL 260

[Close]

BLAST of Lsi09G004040.1 vs. TrEMBL
Match: K7LMR9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G030900 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 2.4e-44
Identity = 110/249 (44.18%), Postives = 145/249 (58.23%), Query Frame = 1


Query: 14  NSVPEWLEILLGEKFFTPCSLHKSTKKNDKTFFCLFCRSAICFSCFSSHRTHTLLQIRRY 73
           NSVP WL IL  EKFFT C +H S KKN+K  FCL C ++IC  C   HR+H LLQIRRY
Sbjct: 5   NSVPNWLLILKEEKFFTRCLIHHSVKKNEKNIFCLDCCTSICLHCLPFHRSHVLLQIRRY 64

Query: 74  VYHEVIRLGDAEKLLNCSLIQPYTTNRAKVVFLKHR-RRGKRKGLRGGGGSAHFCITCFR 133
           +Y++V+RLGDA+ LLNCSL+QPYTTN+ KVVFLK R   G  +      GS++ CITC R
Sbjct: 65  MYNDVLRLGDAQTLLNCSLVQPYTTNKTKVVFLKQRPPTGSHR------GSSNICITCDR 124

Query: 134 NLQYPYLFCSLSCKINQKV--------------NDKIEIINKQKRNYDHFPPRSTTQTQT 193
           NLQ PY+FCS+SCK++Q V                +  ++  ++R+ ++      +Q  T
Sbjct: 125 NLQDPYIFCSVSCKVHQHVLLITKSTSIKDTWNKHEFSVLLDKERSSENHQEIEDSQI-T 184

Query: 194 PTSVLDGDFPSAVS------KTAAAIKLVKKNRNCVKSLAAVLYRPRCFPISDIATAANR 242
             SVLD   P++ S       T+     V +N +  K   +V   P  +      T  NR
Sbjct: 185 TDSVLDSHSPTSTSLCTVSGSTSTNSGSVTENESLKKKRGSVDMVPEIW-----YTMVNR 241

[Close]

BLAST of Lsi09G004040.1 vs. TrEMBL
Match: A0A061G3H1_THECC (PLATZ transcription factor family protein, putative OS=Theobroma cacao GN=TCM_016018 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 4.1e-44
Identity = 117/273 (42.86%), Postives = 147/273 (53.85%), Query Frame = 1


Query: 14  NSVPEWLEILLGEKFFTPCSLHKSTKKNDKTFFCLFCRSAICFSCFSSHRTHTLLQIRRY 73
           +S+P WL ILLGEKFF PC +H+S KKN+K  FCL C   IC  C   HR H  LQIRRY
Sbjct: 5   SSIPHWLGILLGEKFFDPCVVHESAKKNEKNIFCLNCCVTICPHCLPVHRPHRRLQIRRY 64

Query: 74  VYHEVIRLGDAEKLLNCSLIQPYTTNRAKVVFLKHRRRGKRKGLRGGGGSAHFCITCFRN 133
           VY +VIRL DA+KL+NCSL+QPYTTN AKVVFL  R        R   GS +FCI C R+
Sbjct: 65  VYQDVIRLSDAQKLINCSLVQPYTTNSAKVVFLNERPMS-----RPFRGSGNFCINCDRS 124

Query: 134 LQYPYLFCSLSCKIN---------QKVNDKIEIINKQKRNYDHFPPRSTTQTQ-----TP 193
           LQ P+LFCSLSCK+N         +K++   E++     +Y      S T+ +     TP
Sbjct: 125 LQDPFLFCSLSCKVNHFETTKHGGKKLDQNSELL---PSSYKTRSDVSVTEIEEDPQMTP 184

Query: 194 TSVLDGDF-------------------------PSAVSKTAAAIKLVKKNRNCVKSLAAV 243
            SVLD                             S ++ TA    + KK +  +K  + V
Sbjct: 185 DSVLDSPVSPRTWSGGSTNTTATSNGGSAINCKSSLIACTATTEFVKKKMKMKMKKSSCV 244

[Close]

BLAST of Lsi09G004040.1 vs. TAIR10
Match: AT2G12646.1 (AT2G12646.1 PLATZ transcription factor family protein)

HSP 1 Score: 158.7 bits (400), Expect = 4.6e-39
Identity = 96/255 (37.65%), Postives = 138/255 (54.12%), Query Frame = 1


Query: 17  PEWLEILLGEKFFTPCSLHKSTKKNDKTFFCLFCRSAICFSCFSSHRTHTLLQIRRYVYH 76
           P WL+ L  EKFF  C  H++ KKN++   CL C +++C  C  SHR H LLQ+RRYVYH
Sbjct: 6   PAWLDALYAEKFFVGCPYHETAKKNERNVCCLDCCTSLCPHCVPSHRFHRLLQVRRYVYH 65

Query: 77  EVIRLGDAEKLLNCSLIQPYTTNRAKVVFLKHRRRGKRKGLRGGGGSAHFCITCFRNLQY 136
           +V+RL D +KL++CS +Q YT N AKVVF+K     KR   R   G+ ++C +C R+LQ 
Sbjct: 66  DVVRLEDLQKLIDCSNVQAYTINSAKVVFIK-----KRPQNRQFKGAGNYCTSCDRSLQE 125

Query: 137 PYLFCSLSCKIN------QKVNDKIEIINKQKRNYDHFPPR------STTQTQTPTS-VL 196
           PY+ CSL CK++      + +   ++  +      D+  P+           +TP S V+
Sbjct: 126 PYIHCSLGCKVDFVMKRYRDITPFLKPCHTLTLGPDYIIPQDLLTDDEVAAYETPRSTVV 185

Query: 197 DGD--------------FPSAVSKTAAAIKLVKKNRN--CVKSLAAVLYRPRCFPISDIA 243
           DGD                +A +  A    +V+K R   C+ + +A  Y+       DI+
Sbjct: 186 DGDESMSWSSASSDNNNAGAAAAYAATTTHVVRKKRTGFCLCAKSANSYKEVSEDPDDIS 245

[Close]

BLAST of Lsi09G004040.1 vs. TAIR10
Match: AT3G60670.1 (AT3G60670.1 PLATZ transcription factor family protein)

HSP 1 Score: 157.9 bits (398), Expect = 7.8e-39
Identity = 94/256 (36.72%), Postives = 139/256 (54.30%), Query Frame = 1


Query: 12  ENNSVPEWLEILLGEKFFTPCSLHKSTKKNDKTFFCLFCRSAICFSCFSSHRTHTLLQIR 71
           E+   P WLE+LL +KFF  C  H+  KKN+K   C+ C   IC  C SSH +H LLQIR
Sbjct: 2   ESGEFPAWLEVLLKDKFFNACLDHEDDKKNEKNILCIDCCLTICPHCLSSHTSHRLLQIR 61

Query: 72  RYVYHEVIRLGDAEKLLNCSLIQPYTTNRAKVVFLKHRRRGKRKGLRGGGGSAHFCITCF 131
           RYVY +V+R+ D  KL++CSLIQPYTTN +KVVF+  R + ++   RG G   + CITC 
Sbjct: 62  RYVYRDVLRVEDGSKLMDCSLIQPYTTNSSKVVFINERPQSRQ--FRGSG---NICITCD 121

Query: 132 RNLQYPYLFCSLSCKINQ------------KVNDKIEIINKQKRN--YDHFPPRSTTQTQ 191
           R+LQ PYLFC LSCKI+             +V + +++ ++           P  + +T 
Sbjct: 122 RSLQSPYLFCCLSCKISDVIMRQRGLSGFLRVCNVLDLTDEVTTTTPSSTLEPTGSNRTS 181

Query: 192 TPTSVLDGD--FPSAVSKTAAAIKLVKKNRNCVKSLAAVLYRPRCFPISDIATAA----- 243
           + +S  +G+  F        A  ++V+K R+ + +         C  ++++ +       
Sbjct: 182 SESSGNEGEDMFWCQALACTATTEIVRKKRSSLST--------TCRRVTEVVSTTNTEAP 241

[Close]

BLAST of Lsi09G004040.1 vs. TAIR10
Match: AT1G31040.1 (AT1G31040.1 PLATZ transcription factor family protein)

HSP 1 Score: 155.6 bits (392), Expect = 3.9e-38
Identity = 92/255 (36.08%), Postives = 139/255 (54.51%), Query Frame = 1


Query: 7   MVREGENN--------SVPEWLEILLGEKFFTPCSLHKSTKKNDKTFFCLFCRSAICFSC 66
           MVREGE          + P WLE L+ E FF+ C +H++ +K++K  FCL C  ++C  C
Sbjct: 1   MVREGEEEEEMMMMMATKPAWLEGLMAETFFSSCGIHETRRKSEKNVFCLLCCLSVCPHC 60

Query: 67  FSSHRTHTLLQIRRYVYHEVIRLGDAEKLLNCSLIQPYTTNRAKVVFLKHRRRGKRKGLR 126
             SHR+H LLQ+RRYVYH+V+RL D EKL++CS +QPYT N AKV+FL  R++ + K   
Sbjct: 61  LPSHRSHPLLQVRRYVYHDVVRLSDLEKLIDCSYVQPYTINGAKVIFLNQRQQSRAK--- 120

Query: 127 GGGGSAHFCITCFRNLQYPYLFCSLSCKIN------QKVNDKIEIINKQKRNYDHFPPRS 186
               S++ C TC R LQ P+ FCSLSCK++        ++  +  I++    ++      
Sbjct: 121 ---VSSNVCFTCDRILQEPFHFCSLSCKVDYLSYQGDDLSSILYRIDESDFTFEGLRMDG 180

Query: 187 TTQTQTPTSVLDGDFPSAVSKTAA----AIKLVKKNRNCVKSLAAVLYRPRCFPISDIAT 244
             Q    +++ DG+    +S  +     + K  KK     K  +  L      P   +++
Sbjct: 181 HDQLGEISTMEDGEDILVISDESEQGNNSHKKEKKKSKKKKPESNYL------PGMVLSS 240

[Close]

BLAST of Lsi09G004040.1 vs. TAIR10
Match: AT1G32700.1 (AT1G32700.1 PLATZ transcription factor family protein)

HSP 1 Score: 122.1 bits (305), Expect = 4.8e-28
Identity = 80/234 (34.19%), Postives = 120/234 (51.28%), Query Frame = 1


Query: 10  EGENNSVPEWLEILLGEKFFTPCSLHKSTKKNDKTFFCLFCRSA-ICFSCFSSHRTHTLL 69
           E  N + P WL+ LL EKFF  C LH  + K++   +CL C +  +C  C S H+ H  +
Sbjct: 5   EETNKTYPHWLKPLLREKFFVQCKLHADSHKSECNMYCLDCTNGPLCSLCLSFHKDHHAI 64

Query: 70  QIRRYVYHEVIRLGDAEKLLNCSLIQPYTTNRAKVVFLKHRRRGKRKGLRGGGGSAHFCI 129
           QIRR  YH+VIR+ + +K L+ + +Q Y  N AKVVFL  R +      R G G  + C 
Sbjct: 65  QIRRSSYHDVIRVSEIQKFLDITGVQTYVINSAKVVFLNERPQP-----RPGKGVINTCE 124

Query: 130 TCFRNLQYPYLFCSLSCKINQKVNDKIEIINKQKRNYDHFPPRSTTQTQTPTSVLDGDFP 189
            C+R+L   + FCSL CKI+         I+K+KR             +   ++ D D  
Sbjct: 125 VCYRSLVDSFRFCSLGCKISG--------ISKKKRK------------EWTNNLSDSD-- 184

Query: 190 SAVSKTAAAIKLVKKNRNCVKSLAAVLYRPRCFPISDI-ATAANRRKGVPQRSP 242
              S ++ +I  +KKN + + +     + P   P+S +    A RRKG+P R+P
Sbjct: 185 --DSYSSTSIGRLKKNDDIMNN----SFTPSTPPLSAVNRRIAKRRKGIPHRAP 205

[Close]

BLAST of Lsi09G004040.1 vs. TAIR10
Match: AT1G76590.1 (AT1G76590.1 PLATZ transcription factor family protein)

HSP 1 Score: 113.6 bits (283), Expect = 1.7e-25
Identity = 81/262 (30.92%), Postives = 121/262 (46.18%), Query Frame = 1


Query: 7   MVREGENN---SVPEWLEILLGEKFFTPCSLHKSTKKNDKTFFCLFCRS-AICFSCFSSH 66
           M+R  E+N   + P WL  +L   +F PCS+H ++ K++   FCL C S A C  C  +H
Sbjct: 5   MMRAEEDNYNLNPPPWLIPMLRANYFIPCSIHAASNKSECNMFCLDCSSEAFCSYCLLNH 64

Query: 67  RTHTLLQIRRYVYHEVIRLGDAEKLLNCSLIQPYTTNRAKVVFLKHRRRGKRKGLRGGGG 126
           R H +LQIRR  YH V+R+ + +K ++ S +Q Y  N A++VFL  R +      R G G
Sbjct: 65  RNHRVLQIRRSSYHNVVRVNEIQKYIDISCVQTYIINSARIVFLNERPQP-----RIGKG 124

Query: 127 SAHFCITCFRNLQYPYLFCSLSCKI-NQKVNDKIEIINKQKRNYDHFPPRSTTQTQTPTS 186
             + C  C R+L   + FCSL CK+   K +  +    + K   ++     + +  TPT 
Sbjct: 125 VTNTCEICCRSLLDSFRFCSLGCKLGGMKRDPSLTFSLRGKHGREYEGEWESDEATTPTK 184

Query: 187 V----------------------LDGDFPSAVSKTAAAIKLVKKNRNCVKSLAAVLYRPR 242
           +                      L GD PS+ S   +  KL                 P 
Sbjct: 185 IRKTCAFNRLMSGLSISTVKCDYLSGDQPSSSSGDESGFKL----------------SPG 244

[Close]

BLAST of Lsi09G004040.1 vs. NCBI nr
Match: gi|659074643|ref|XP_008437715.1| (PREDICTED: uncharacterized protein LOC103483060 [Cucumis melo])

HSP 1 Score: 394.8 bits (1013), Expect = 1.1e-106
Identity = 198/245 (80.82%), Postives = 213/245 (86.94%), Query Frame = 1


Query: 7   MVREGENNSVPEWLEILLGEKFFTPCSLHKSTKKNDKTFFCLFCRSAICFSCFSSHRTHT 66
           MVRE ENNSVPEW+EILLGEKFFTPCSLH S KKNDKTFFCLFCRSAICFSCFSSHRTH 
Sbjct: 1   MVREVENNSVPEWVEILLGEKFFTPCSLHISCKKNDKTFFCLFCRSAICFSCFSSHRTHA 60

Query: 67  LLQIRRYVYHEVIRLGDAEKLLNCSLIQPYTTNRAKVVFLKHRRRGKRKGLRGGGG---- 126
           LLQIRRYVYHEVIRL DAEKL+NCSL+QPYTTNRAKVVFLK RRRGKR+GLR   G    
Sbjct: 61  LLQIRRYVYHEVIRLRDAEKLMNCSLVQPYTTNRAKVVFLKERRRGKRRGLRSSSGGSRS 120

Query: 127 ---SAHFCITCFRNLQYPYLFCSLSCKINQKVNDKIEIINKQKRNYDHFPPRSTTQTQTP 186
              + + CITCFRNLQYPYLFCSLSCKINQKVN+KIEII+KQKRNY++ PPR+TT+TQTP
Sbjct: 121 NSNNTNLCITCFRNLQYPYLFCSLSCKINQKVNEKIEIISKQKRNYENLPPRTTTETQTP 180

Query: 187 TSVLDGDFPSAVSKTAAAIKLVKK--NRNCVKSLAAVLYRPRCFPISDIATAANRRKGVP 243
           +SVLD DF SA    AAA+K VKK  NR+CVKSLAAVL RPRCFPISD ATA NRRKGVP
Sbjct: 181 SSVLDRDFSSA----AAAVKSVKKKNNRSCVKSLAAVLCRPRCFPISDFATAVNRRKGVP 240

[Close]

BLAST of Lsi09G004040.1 vs. NCBI nr
Match: gi|778699974|ref|XP_011654791.1| (PREDICTED: uncharacterized protein LOC101221644 [Cucumis sativus])

HSP 1 Score: 394.4 bits (1012), Expect = 1.4e-106
Identity = 200/252 (79.37%), Postives = 214/252 (84.92%), Query Frame = 1


Query: 7   MVREGENNSVPEWLEILLGEKFFTPCSLHKSTKKNDKTFFCLFCRSAICFSCFSSHRTHT 66
           MVRE ENNSVPEW+EILLGEKFFTPCSLH S KKNDKTFFCLFCRSAICFSCFSSHRTH 
Sbjct: 1   MVREVENNSVPEWVEILLGEKFFTPCSLHISCKKNDKTFFCLFCRSAICFSCFSSHRTHA 60

Query: 67  LLQIRRYVYHEVIRLGDAEKLLNCSLIQPYTTNRAKVVFLKHRRRGKRKGLR-------- 126
           LLQIRRYVYHEV+ LGDAEKL+NCSL+QPYTTNRAKVVFLK RRRGKR+GLR        
Sbjct: 61  LLQIRRYVYHEVVLLGDAEKLMNCSLVQPYTTNRAKVVFLKERRRGKRRGLRSSSSSSSS 120

Query: 127 GGGG------SAHFCITCFRNLQYPYLFCSLSCKINQKVNDKIEIINKQKRNYDHFPPRS 186
           GGGG      + + CITCFRNLQYPYLFCSLSCKINQKVN+KIEIINKQKR Y++ PPR+
Sbjct: 121 GGGGWRSNNNNGNLCITCFRNLQYPYLFCSLSCKINQKVNEKIEIINKQKRKYENLPPRT 180

Query: 187 TTQTQTPTSVLDGDFPSAVSKTAAAIKLVKK-NRNCVKSLAAVLYRPRCFPISDIATAAN 244
           TT+ QTPTSVLD DF S     AAA+KL KK NR+CVKSLAAVL RPRCFPIS  ATA N
Sbjct: 181 TTENQTPTSVLDRDFSS-----AAAVKLAKKNNRSCVKSLAAVLCRPRCFPISGFATAVN 240

[Close]

BLAST of Lsi09G004040.1 vs. NCBI nr
Match: gi|731380155|ref|XP_010662296.1| (PREDICTED: uncharacterized protein LOC100852507 [Vitis vinifera])

HSP 1 Score: 195.3 bits (495), Expect = 1.3e-46
Identity = 118/252 (46.83%), Postives = 142/252 (56.35%), Query Frame = 1


Query: 16  VPEWLEILLGEKFFTPCSLHKSTKKNDKTFFCLFCRSAICFSCFSSHRTHTLLQIRRYVY 75
           +P WLEILLGEKFF  C +H+  KKN+K  FCL C ++IC  C   HR H LLQIRRYVY
Sbjct: 8   IPHWLEILLGEKFFNACVVHECAKKNEKNIFCLDCCTSICPHCLLPHRHHRLLQIRRYVY 67

Query: 76  HEVIRLGDAEKLLNCSLIQPYTTNRAKVVFLKHRRRGKRKGLRGGGGSAHFCITCFRNLQ 135
           H+VIRL DA+KL++CSL+Q YTTN AKVVFL  R        R   GS + C TC R+LQ
Sbjct: 68  HDVIRLDDAQKLMDCSLVQSYTTNSAKVVFLNQRPMS-----RPFRGSGNLCYTCDRSLQ 127

Query: 136 YPYLFCSLSCKINQKVNDKIEIINKQKRNYDHFP----------PRSTTQTQTPTSVLDG 195
            PYLFCSL+CK++  VN K     K   N++  P               +  TP SVLD 
Sbjct: 128 DPYLFCSLACKVHHTVNVK-GGATKHLHNFEFLPLPDRARGEAFSELDDRQMTPESVLDS 187

Query: 196 DF----PSAVSKTAAAI-----------KLVKKNRNCVKSLAAVLYRPRCFPISDIATAA 243
                  S  S T  A+           + VKK R+ V S+    +RP   P SD A   
Sbjct: 188 PVSLRTSSGSSSTGGAVSCRALACTATTEFVKKKRSSV-SVPRFPFRPILSPTSDNAGGI 247

[Close]

BLAST of Lsi09G004040.1 vs. NCBI nr
Match: gi|1009165548|ref|XP_015901098.1| (PREDICTED: uncharacterized protein LOC107434182 [Ziziphus jujuba])

HSP 1 Score: 194.5 bits (493), Expect = 2.1e-46
Identity = 112/258 (43.41%), Postives = 146/258 (56.59%), Query Frame = 1


Query: 15  SVPEWLEILLGEKFFTPCSLHKSTKKNDKTFFCLFCRSAICFSCFSSHRTHTLLQIRRYV 74
           ++P+WLEILLGEKFF PC +HK +KKN+K  FCL C +++C  C  +HR H+LLQIRRYV
Sbjct: 71  NIPQWLEILLGEKFFMPCMVHKHSKKNEKNIFCLDCCTSLCPHCLPTHRPHSLLQIRRYV 130

Query: 75  YHEVIRLGDAEKLLNCSLIQPYTTNRAKVVFLKHRRRGKRKGLRGGGGSAHFCITCFRNL 134
           YH+VI+L DA+KL++CSL+Q YTTN AKVVFL  R        R    S++ CI C R+L
Sbjct: 131 YHDVIQLDDAQKLIDCSLVQTYTTNSAKVVFLNQRPIS-----RPFRASSNLCIKCDRSL 190

Query: 135 QYPYLFCSLSCKINQKVNDK---------IEIINKQKRNYDHFPPRSTTQTQTPTSVLDG 194
           Q  +LFCSL CK+   V  K          E +    R   H    S ++ +   +V D 
Sbjct: 191 QNSFLFCSLFCKVYHLVTMKNGTHLEKLNCEFLRLPNRTRSH----SFSKLEDNQNVHDS 250

Query: 195 DFPSAVSKT---------------------AAAIKLVKKNRNCVKSLAAVLYRPRCFPIS 243
              S VS +                     +AA K VKK R+ + S+    +R  C P  
Sbjct: 251 GLDSPVSLSGSTSSTIGGVSSESLRTILPCSAATKFVKKKRSSLNSVPREFFRQICSPAD 310

[Close]

BLAST of Lsi09G004040.1 vs. NCBI nr
Match: gi|702336317|ref|XP_010055523.1| (PREDICTED: uncharacterized protein LOC104443711 [Eucalyptus grandis])

HSP 1 Score: 194.5 bits (493), Expect = 2.1e-46
Identity = 112/248 (45.16%), Postives = 141/248 (56.85%), Query Frame = 1


Query: 11  GENNSVPEWLEILLGEKFFTPCSLHKSTKKNDKTFFCLFCRSAICFSCFSSHRTHTLLQI 70
           G  + +P WL ILLGEKFF PC +H   KKN+K  FCL C +++C  C   HR H LLQI
Sbjct: 10  GRGSDIPRWLRILLGEKFFNPCGVHDCAKKNEKNTFCLDCCASMCPHCLPPHRHHRLLQI 69

Query: 71  RRYVYHEVIRLGDAEKLLNCSLIQPYTTNRAKVVFLKHRRRGKRKGLRGGGGSAHFCITC 130
           RRYVYH+VIRLGDA+KLL+CSL+QPYTTN AKVVFL  R        R   GS +FCITC
Sbjct: 70  RRYVYHDVIRLGDAQKLLDCSLVQPYTTNSAKVVFLNQRPMS-----RPFRGSGNFCITC 129

Query: 131 FRNLQYPYLFCSLSCKINQKVNDKIEIINK------------QKRNYDHFPPRSTTQTQT 190
            R+LQ  + FCSLSCK++ ++  KI +  +             + +++ FP        T
Sbjct: 130 DRSLQDGFHFCSLSCKVHDQMTKKIGLKKRLQDHSHEPLPSLNRPSHERFPELEDDGHIT 189

Query: 191 PTSVLDGDFPSAVSKTAAAIKLVKKNRNCVKSLAAVLYRPRCFPISDIATAA----NRRK 243
           P SVLD      +S TA      +K             R  C P +D+A +     NRRK
Sbjct: 190 PDSVLD----LPISPTACPEFGRRKRYRPAPIAQVATARLWCRPATDVAGSVAGYMNRRK 248

The following BLAST results are available for this feature:

BLAST of Lsi09G004040.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi09G004040.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKT3_CUCSA	9.8e-107	79.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G160750 PE=4 SV=1	[more]
F6HP95_VITVI	2.2e-45	46.69	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0154g00150 PE=4 SV=...	[more]
V4T0E5_9ROSI	4.8e-45	44.96	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021750mg PE=4 SV=1	[more]
K7LMR9_SOYBN	2.4e-44	44.18	Uncharacterized protein OS=Glycine max GN=GLYMA_11G030900 PE=4 SV=1	[more]
A0A061G3H1_THECC	4.1e-44	42.86	PLATZ transcription factor family protein, putative OS=Theobroma cacao GN=TCM_01...	[more]

BLAST of Lsi09G004040.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G12646.1	4.6e-39	37.65	PLATZ transcription factor family protein	[more]
AT3G60670.1	7.8e-39	36.72	PLATZ transcription factor family protein	[more]
AT1G31040.1	3.9e-38	36.08	PLATZ transcription factor family protein	[more]
AT1G32700.1	4.8e-28	34.19	PLATZ transcription factor family protein	[more]
AT1G76590.1	1.7e-25	30.92	PLATZ transcription factor family protein	[more]

BLAST of Lsi09G004040.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074643\|ref\|XP_008437715.1\|	1.1e-106	80.82	PREDICTED: uncharacterized protein LOC103483060 [Cucumis melo]	[more]
gi\|778699974\|ref\|XP_011654791.1\|	1.4e-106	79.37	PREDICTED: uncharacterized protein LOC101221644 [Cucumis sativus]	[more]
gi\|731380155\|ref\|XP_010662296.1\|	1.3e-46	46.83	PREDICTED: uncharacterized protein LOC100852507 [Vitis vinifera]	[more]
gi\|1009165548\|ref\|XP_015901098.1\|	2.1e-46	43.41	PREDICTED: uncharacterized protein LOC107434182 [Ziziphus jujuba]	[more]
gi\|702336317\|ref\|XP_010055523.1\|	2.1e-46	45.16	PREDICTED: uncharacterized protein LOC104443711 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular

Vocabulary: **INTERPRO**
Term	Definition
IPR006734	DUF597
IPR000315	Znf_B-box

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005622	intracellular
molecular_function	GO:0008270	zinc ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi09G004040	Lsi09G004040	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi09G004040.1	Lsi09G004040.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi09G004040.1.CDS.1	Lsi09G004040.1.CDS.1	CDS
Lsi09G004040.1.CDS.2	Lsi09G004040.1.CDS.2	CDS
Lsi09G004040.1.CDS.3	Lsi09G004040.1.CDS.3	CDS
Lsi09G004040.1.CDS.4	Lsi09G004040.1.CDS.4	CDS
Lsi09G004040.1.CDS.5	Lsi09G004040.1.CDS.5	CDS
Lsi09G004040.1.CDS.6	Lsi09G004040.1.CDS.6	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi09G004040.1.three_prime_UTR.1	Lsi09G004040.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000315	B-box-type zinc finger	PROFILE	PS50119	ZF_BBOX	coord: 32..81 score: 9
IPR006734	Protein of unknown function DUF597	PFAM	PF04640	PLATZ	coord: 71..147 score: 1.0
None	No IPR available	PANTHER	PTHR31065	FAMILY NOT NAMED	coord: 10..242 score: 4.0
None	No IPR available	PANTHER	PTHR31065:SF1	SUBFAMILY NOT NAMED	coord: 10..242 score: 4.0
None	No IPR available	unknown	SSF57845	B-box zinc-binding domain	coord: 31..79 score: 5.9