Lsi09G000690.1 (mRNA) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi09G000690.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr09 : 589207 .. 590409 (+)
Sequence length231
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAATGAATGAATTCTTAGGCCAATGTTCAAACCGTTTACCTCGTATCATTGAAAAAATTTAATTACGATGTTTTCGAGTACAAGGGGATGGGAATGCATAATGTATTATGAAAATGTGGAGCAGATAGTCAGATTTGTTTGATATGTTTTGGACCATGGGGAACATACCATAGGATTTGTACATCATTTATGTGTAATTTTTATGCATTCAATCTATAAAGGTTGTAGAGTTTGTATCATAAATTACTTGAACTGCTTAGAGATATTCTTTATTATTTGACAGATACTATATATGGTTGAACTTAAAGCAGAATTGTTCTTAGGTCCAAGATTTTGATTTTTTTTTTAAAGAACATAAATGAGCGATTGATCAAATTCCCTAAAGAATAGATTAACTTGTATTAGGCTAGAGCTTTTGAATATTAAGAACATGTTTAGCCCAAAAAATAAAAAGTGATGAAGTAAAGACTCCACTCCTTGATTGGTCCCAGACGTTCTTGAACCGATTGTGGATCTCACAATTAAATAACATCAATATCATGATTTAATAACTTCTTACACCGGAGCTAACTATCCAAACATTTTCACGCCTCCTAAATATCCATCTCATCTTTTTTCAAAGAGAATAAAAAGGACATTGATTCCATATGAAGCATTTCAATAGAATTTTACAACTGATAACCTAATACCTTGGCTTTTATAAAGAAATATTTCATAAATGTGAGAAATTTTGATAGCAGATATCGAAGTTACTTCAGTCAGCATACCAATCTAAATGTCAATCACATTATACCCATTTAAGTGAAGATGAATTGATTTATAATTGGTATCTAGGACAAAACTTTAATGCACAAGCATTTCAATAAAGTTGCACTCTTCCTCGAATAACAAGTATGCAAAAATCATAAGAGATCAAAACCTTTCTGCCAATCTGGCTGTAACTGCTCTTAGTTTTGAATAAACTTTTCCAGCTGGAGAACCTAAAATGAGGCTGCAAAGAGAATCTCTAGCAATCTTGATGTTGGCGAAGGATCCTAATATGTGGATCTTGGTGTCTGCAATAACTATCCTTGTCTTTGTAGCATTTTCAATGGCGAACTTCGTTTTACCAGCTTTACCAGACAATCTGCCTATAGCACGGGACAAATGCTCGCCTCGAAGCGTCTTAACATCTTTGATCTCAAAGGATTCTACATAG

mRNA sequence

ATGGCTGGAGAACCTAAAATGAGGCTGCAAAGAGAATCTCTAGCAATCTTGATGTTGGCGAAGGATCCTAATATGTGGATCTTGGTGTCTGCAATAACTATCCTTGTCTTTGTAGCATTTTCAATGGCGAACTTCGTTTTACCAGCTTTACCAGACAATCTGCCTATAGCACGGGACAAATGCTCGCCTCGAAGCGTCTTAACATCTTTGATCTCAAAGGATTCTACATAG

Coding sequence (CDS)

ATGGCTGGAGAACCTAAAATGAGGCTGCAAAGAGAATCTCTAGCAATCTTGATGTTGGCGAAGGATCCTAATATGTGGATCTTGGTGTCTGCAATAACTATCCTTGTCTTTGTAGCATTTTCAATGGCGAACTTCGTTTTACCAGCTTTACCAGACAATCTGCCTATAGCACGGGACAAATGCTCGCCTCGAAGCGTCTTAACATCTTTGATCTCAAAGGATTCTACATAG

Protein sequence

MAGEPKMRLQRESLAILMLAKDPNMWILVSAITILVFVAFSMANFVLPALPDNLPIARDKCSPRSVLTSLISKDST
Homology
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BLAST of Lsi09G000690.1 vs. TrEMBL
Match: A0A146UDW1_FUNHE (Uncharacterized protein OS=Fundulus heteroclitus PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-06
Identity = 40/69 (57.97%), Postives = 45/69 (65.22%), Query Frame = 1 

Query: 7  MRLQRESLAILMLAKDPNMWILVSAITILVFVAFSMANFVLPALPDNLPIARDKCSPRSV 66
          MRL    LA LML+K P   IL SA T+ V VAFSMA  V P+ P   PIA D  SP S+
Sbjct: 1  MRLHMARLAFLMLSKLPRRCILESASTMRVRVAFSMAYLVRPSFPAIRPIALDMWSPLSL 60

Query: 67 LTSLISKDS 76
          LTSL+SKDS
Sbjct: 61 LTSLMSKDS 69

The following BLAST results are available for this feature:
BLAST of Lsi09G000690.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi09G000690.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A146UDW1_FUNHE1.4e-0657.97Uncharacterized protein OS=Fundulus heteroclitus PE=4 SV=1[more]
BLAST of Lsi09G000690.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi09G000690.1 vs. NCBI nr
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi09G000690Lsi09G000690gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi09G000690.1.CDS.1Lsi09G000690.1.CDS.1CDS
Lsi09G000690.1.CDS.2Lsi09G000690.1.CDS.2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi09G000690.1Lsi09G000690.1-proteinpolypeptide