Lsi09G000690 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi09G000690
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr09 : 589207 .. 590409 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAATGAATGAATTCTTAGGCCAATGTTCAAACCGTTTACCTCGTATCATTGAAAAAATTTAATTACGATGTTTTCGAGTACAAGGGGATGGGAATGCATAATGTATTATGAAAATGTGGAGCAGATAGTCAGATTTGTTTGATATGTTTTGGACCATGGGGAACATACCATAGGATTTGTACATCATTTATGTGTAATTTTTATGCATTCAATCTATAAAGGTTGTAGAGTTTGTATCATAAATTACTTGAACTGCTTAGAGATATTCTTTATTATTTGACAGATACTATATATGGTTGAACTTAAAGCAGAATTGTTCTTAGGTCCAAGATTTTGATTTTTTTTTTAAAGAACATAAATGAGCGATTGATCAAATTCCCTAAAGAATAGATTAACTTGTATTAGGCTAGAGCTTTTGAATATTAAGAACATGTTTAGCCCAAAAAATAAAAAGTGATGAAGTAAAGACTCCACTCCTTGATTGGTCCCAGACGTTCTTGAACCGATTGTGGATCTCACAATTAAATAACATCAATATCATGATTTAATAACTTCTTACACCGGAGCTAACTATCCAAACATTTTCACGCCTCCTAAATATCCATCTCATCTTTTTTCAAAGAGAATAAAAAGGACATTGATTCCATATGAAGCATTTCAATAGAATTTTACAACTGATAACCTAATACCTTGGCTTTTATAAAGAAATATTTCATAAATGTGAGAAATTTTGATAGCAGATATCGAAGTTACTTCAGTCAGCATACCAATCTAAATGTCAATCACATTATACCCATTTAAGTGAAGATGAATTGATTTATAATTGGTATCTAGGACAAAACTTTAATGCACAAGCATTTCAATAAAGTTGCACTCTTCCTCGAATAACAAGTATGCAAAAATCATAAGAGATCAAAACCTTTCTGCCAATCTGGCTGTAACTGCTCTTAGTTTTGAATAAACTTTTCCAGCTGGAGAACCTAAAATGAGGCTGCAAAGAGAATCTCTAGCAATCTTGATGTTGGCGAAGGATCCTAATATGTGGATCTTGGTGTCTGCAATAACTATCCTTGTCTTTGTAGCATTTTCAATGGCGAACTTCGTTTTACCAGCTTTACCAGACAATCTGCCTATAGCACGGGACAAATGCTCGCCTCGAAGCGTCTTAACATCTTTGATCTCAAAGGATTCTACATAG

mRNA sequence

ATGGCTGGAGAACCTAAAATGAGGCTGCAAAGAGAATCTCTAGCAATCTTGATGTTGGCGAAGGATCCTAATATGTGGATCTTGGTGTCTGCAATAACTATCCTTGTCTTTGTAGCATTTTCAATGGCGAACTTCGTTTTACCAGCTTTACCAGACAATCTGCCTATAGCACGGGACAAATGCTCGCCTCGAAGCGTCTTAACATCTTTGATCTCAAAGGATTCTACATAG

Coding sequence (CDS)

ATGGCTGGAGAACCTAAAATGAGGCTGCAAAGAGAATCTCTAGCAATCTTGATGTTGGCGAAGGATCCTAATATGTGGATCTTGGTGTCTGCAATAACTATCCTTGTCTTTGTAGCATTTTCAATGGCGAACTTCGTTTTACCAGCTTTACCAGACAATCTGCCTATAGCACGGGACAAATGCTCGCCTCGAAGCGTCTTAACATCTTTGATCTCAAAGGATTCTACATAG

Protein sequence

MAGEPKMRLQRESLAILMLAKDPNMWILVSAITILVFVAFSMANFVLPALPDNLPIARDKCSPRSVLTSLISKDST
Homology
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BLAST of Lsi09G000690 vs. TrEMBL
Match: A0A146UDW1_FUNHE (Uncharacterized protein OS=Fundulus heteroclitus PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-06
Identity = 40/69 (57.97%), Postives = 45/69 (65.22%), Query Frame = 1 

Query: 7  MRLQRESLAILMLAKDPNMWILVSAITILVFVAFSMANFVLPALPDNLPIARDKCSPRSV 66
          MRL    LA LML+K P   IL SA T+ V VAFSMA  V P+ P   PIA D  SP S+
Sbjct: 1  MRLHMARLAFLMLSKLPRRCILESASTMRVRVAFSMAYLVRPSFPAIRPIALDMWSPLSL 60

Query: 67 LTSLISKDS 76
          LTSL+SKDS
Sbjct: 61 LTSLMSKDS 69

The following BLAST results are available for this feature:
BLAST of Lsi09G000690 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi09G000690 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A146UDW1_FUNHE1.4e-0657.97Uncharacterized protein OS=Fundulus heteroclitus PE=4 SV=1[more]
BLAST of Lsi09G000690 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi09G000690 vs. NCBI nr
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G000690.1Lsi09G000690.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi09G000690Silver-seed gourdcarlsiB522
Lsi09G000690Silver-seed gourdcarlsiB647
Lsi09G000690Silver-seed gourdcarlsiB902
Lsi09G000690Cucumber (Chinese Long) v3cuclsiB164
Lsi09G000690Cucumber (Chinese Long) v3cuclsiB268
Lsi09G000690Cucumber (Chinese Long) v3cuclsiB345
Lsi09G000690Watermelon (97103) v2lsiwmbB007
Lsi09G000690Watermelon (97103) v2lsiwmbB019
Lsi09G000690Wax gourdlsiwgoB015
Lsi09G000690Wax gourdlsiwgoB045
Lsi09G000690Bottle gourd (USVL1VR-Ls)lsilsiB010
Lsi09G000690Bottle gourd (USVL1VR-Ls)lsilsiB014
Lsi09G000690Cucumber (Gy14) v1cgylsiB347
Lsi09G000690Cucumber (Gy14) v1cgylsiB413
Lsi09G000690Cucurbita maxima (Rimu)cmalsiB226
Lsi09G000690Cucurbita maxima (Rimu)cmalsiB262
Lsi09G000690Cucurbita maxima (Rimu)cmalsiB298
Lsi09G000690Cucurbita maxima (Rimu)cmalsiB363
Lsi09G000690Cucurbita maxima (Rimu)cmalsiB536
Lsi09G000690Cucurbita moschata (Rifu)cmolsiB214
Lsi09G000690Cucurbita moschata (Rifu)cmolsiB249
Lsi09G000690Cucurbita moschata (Rifu)cmolsiB286
Lsi09G000690Cucurbita moschata (Rifu)cmolsiB351
Lsi09G000690Cucurbita moschata (Rifu)cmolsiB520
Lsi09G000690Cucurbita pepo (Zucchini)cpelsiB019
Lsi09G000690Cucurbita pepo (Zucchini)cpelsiB163
Lsi09G000690Cucurbita pepo (Zucchini)cpelsiB134
Lsi09G000690Cucurbita pepo (Zucchini)cpelsiB486
Lsi09G000690Cucurbita pepo (Zucchini)cpelsiB579
Lsi09G000690Wild cucumber (PI 183967)cpilsiB150
Lsi09G000690Wild cucumber (PI 183967)cpilsiB322
Lsi09G000690Cucumber (Chinese Long) v2culsiB151
Lsi09G000690Cucumber (Chinese Long) v2culsiB322
Lsi09G000690Melon (DHL92) v3.5.1lsimeB012
Lsi09G000690Melon (DHL92) v3.5.1lsimeB031
Lsi09G000690Melon (DHL92) v3.5.1lsimeB035
Lsi09G000690Watermelon (Charleston Gray)lsiwcgB008
Lsi09G000690Watermelon (Charleston Gray)lsiwcgB018
Lsi09G000690Watermelon (Charleston Gray)lsiwcgB021
Lsi09G000690Watermelon (97103) v1lsiwmB018
Lsi09G000690Watermelon (97103) v1lsiwmB023
Lsi09G000690Watermelon (97103) v1lsiwmB027
Lsi09G000690Cucumber (Gy14) v2cgyblsiB137
Lsi09G000690Cucumber (Gy14) v2cgyblsiB294
Lsi09G000690Melon (DHL92) v3.6.1lsimedB012
Lsi09G000690Melon (DHL92) v3.6.1lsimedB033
Lsi09G000690Melon (DHL92) v3.6.1lsimedB039