Lsi08G015690.1 (mRNA) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi08G015690.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr08 : 23731495 .. 23731683 (+)
Sequence length189
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCCGTTTCCAAAGTTTCTCTCATGGCTCTCATTGCCATCATCTTCGCCGTTGTCTCCGTCGCCGCTCAGGAGGCTCCAGCCCCCAGCCCGACCTCCCCTGCCACCTCCATTGCTCCGTCGTTCGTCTCCGCTTGCCTCGCTGCCTTCGTTGCTATCGCCTTCGGATCTACTCTCAGGATCTGA

mRNA sequence

ATGGCCGCCGTTTCCAAAGTTTCTCTCATGGCTCTCATTGCCATCATCTTCGCCGTTGTCTCCGTCGCCGCTCAGGAGGCTCCAGCCCCCAGCCCGACCTCCCCTGCCACCTCCATTGCTCCGTCGTTCGTCTCCGCTTGCCTCGCTGCCTTCGTTGCTATCGCCTTCGGATCTACTCTCAGGATCTGA

Coding sequence (CDS)

ATGGCCGCCGTTTCCAAAGTTTCTCTCATGGCTCTCATTGCCATCATCTTCGCCGTTGTCTCCGTCGCCGCTCAGGAGGCTCCAGCCCCCAGCCCGACCTCCCCTGCCACCTCCATTGCTCCGTCGTTCGTCTCCGCTTGCCTCGCTGCCTTCGTTGCTATCGCCTTCGGATCTACTCTCAGGATCTGA

Protein sequence

MAAVSKVSLMALIAIIFAVVSVAAQEAPAPSPTSPATSIAPSFVSACLAAFVAIAFGSTLRI
Homology
[Close]
BLAST of Lsi08G015690.1 vs. Swiss-Prot
Match: AGP15_ARATH (Arabinogalactan peptide 15 OS=Arabidopsis thaliana GN=AGP15 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.2e-06
Identity = 33/60 (55.00%), Postives = 46/60 (76.67%), Query Frame = 1 

Query: 3  AVSKVSLMALIAIIFAVVSVAAQEAPAPSPTSPATSIAPSFVSACLAAFVAIAFGSTLRI 62
          A+SK S++ L+ +I +VV+ A  EAPAPSPTS +++I+ SFVSA +AA  A+ FGS LRI
Sbjct: 2  AISKASIVVLMMVIISVVASAQSEAPAPSPTSGSSAISASFVSAGVAAVAALVFGSALRI 61

[Close]
BLAST of Lsi08G015690.1 vs. TrEMBL
Match: A0A0A0LKU1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G351840 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 3.8e-15
Identity = 53/62 (85.48%), Postives = 59/62 (95.16%), Query Frame = 1 

Query: 1   MAAVSKVSLMALIAIIFAVVSVAAQEAPAPSPTSPATSIAPSFVSACLAAFVAIAFGSTL 60
           MAA+SKVSL+ALIA+IFA+ SVAAQEAPAPSP SPATSIAPS VSACLAAF+A+AFGSTL
Sbjct: 67  MAALSKVSLLALIALIFALSSVAAQEAPAPSPASPATSIAPSAVSACLAAFLALAFGSTL 126

Query: 61  RI 63
           RI
Sbjct: 127 RI 128

[Close]
BLAST of Lsi08G015690.1 vs. TrEMBL
Match: Q96504_CUCSA (CRG16 OS=Cucumis sativus GN=Csa_4G645890 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.9e-07
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 1 

Query: 1  MAAVSKVSLMALIAIIFAVVSVA---AQEAPAPSPTSPATSIAPSFVSACLAAFVAIAFG 60
          MAAVSKVS MAL+A++FAV+SVA   + E+PAP P SPA S+ PS   AC+ AF+A+ FG
Sbjct: 1  MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 60

Query: 61 STLR 62
          S L+
Sbjct: 61 SALK 64

[Close]
BLAST of Lsi08G015690.1 vs. TrEMBL
Match: A0A072VDT0_MEDTR (Transmembrane protein, putative OS=Medicago truncatula GN=MTR_1g016850 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 7.3e-06
Identity = 37/61 (60.66%), Postives = 50/61 (81.97%), Query Frame = 1 

Query: 3  AVSKVSLMALIAIIFAVVSVA-AQEAPAPSPTSPATSIAPSFVSACLAAFVAIAFGSTLR 62
          A +K  L+A +A+ FAV+S+A A EAPAPSPTSPAT+++PSF++  +AA VA+A GSTLR
Sbjct: 2  ASTKTMLLATMAVFFAVISIASAAEAPAPSPTSPATAVSPSFIAGVVAAVVALA-GSTLR 61

[Close]
BLAST of Lsi08G015690.1 vs. TAIR10
Match: AT5G11740.1 (AT5G11740.1 arabinogalactan protein 15)

HSP 1 Score: 53.1 bits (126), Expect = 6.9e-08
Identity = 33/60 (55.00%), Postives = 46/60 (76.67%), Query Frame = 1 

Query: 3  AVSKVSLMALIAIIFAVVSVAAQEAPAPSPTSPATSIAPSFVSACLAAFVAIAFGSTLRI 62
          A+SK S++ L+ +I +VV+ A  EAPAPSPTS +++I+ SFVSA +AA  A+ FGS LRI
Sbjct: 2  AISKASIVVLMMVIISVVASAQSEAPAPSPTSGSSAISASFVSAGVAAVAALVFGSALRI 61

[Close]
BLAST of Lsi08G015690.1 vs. NCBI nr
Match: gi|700207284|gb|KGN62403.1| (hypothetical protein Csa_2G351840 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 5.5e-15
Identity = 53/62 (85.48%), Postives = 59/62 (95.16%), Query Frame = 1 

Query: 1   MAAVSKVSLMALIAIIFAVVSVAAQEAPAPSPTSPATSIAPSFVSACLAAFVAIAFGSTL 60
           MAA+SKVSL+ALIA+IFA+ SVAAQEAPAPSP SPATSIAPS VSACLAAF+A+AFGSTL
Sbjct: 67  MAALSKVSLLALIALIFALSSVAAQEAPAPSPASPATSIAPSAVSACLAAFLALAFGSTL 126

Query: 61  RI 63
           RI
Sbjct: 127 RI 128

[Close]
BLAST of Lsi08G015690.1 vs. NCBI nr
Match: gi|1669529|dbj|BAA08394.1| (CRG16 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 4.2e-07
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 1 

Query: 1  MAAVSKVSLMALIAIIFAVVSVA---AQEAPAPSPTSPATSIAPSFVSACLAAFVAIAFG 60
          MAAVSKVS MAL+A++FAV+SVA   + E+PAP P SPA S+ PS   AC+ AF+A+ FG
Sbjct: 1  MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 60

Query: 61 STLR 62
          S L+
Sbjct: 61 SALK 64

The following BLAST results are available for this feature:
BLAST of Lsi08G015690.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AGP15_ARATH1.2e-0655.00Arabinogalactan peptide 15 OS=Arabidopsis thaliana GN=AGP15 PE=1 SV=1[more]
BLAST of Lsi08G015690.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKU1_CUCSA3.8e-1585.48Uncharacterized protein OS=Cucumis sativus GN=Csa_2G351840 PE=4 SV=1[more]
Q96504_CUCSA2.9e-0759.38CRG16 OS=Cucumis sativus GN=Csa_4G645890 PE=2 SV=1[more]
A0A072VDT0_MEDTR7.3e-0660.66Transmembrane protein, putative OS=Medicago truncatula GN=MTR_1g016850 PE=4 SV=1[more]
BLAST of Lsi08G015690.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G11740.16.9e-0855.00 arabinogalactan protein 15[more]
BLAST of Lsi08G015690.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207284|gb|KGN62403.1|5.5e-1585.48hypothetical protein Csa_2G351840 [Cucumis sativus][more]
gi|1669529|dbj|BAA08394.1|4.2e-0759.38CRG16 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi08G015690Lsi08G015690gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi08G015690.1.CDS.1Lsi08G015690.1.CDS.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi08G015690.1Lsi08G015690.1-proteinpolypeptide