Lsi08G015690 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi08G015690
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr08 : 23731495 .. 23731683 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCCGTTTCCAAAGTTTCTCTCATGGCTCTCATTGCCATCATCTTCGCCGTTGTCTCCGTCGCCGCTCAGGAGGCTCCAGCCCCCAGCCCGACCTCCCCTGCCACCTCCATTGCTCCGTCGTTCGTCTCCGCTTGCCTCGCTGCCTTCGTTGCTATCGCCTTCGGATCTACTCTCAGGATCTGA

mRNA sequence

ATGGCCGCCGTTTCCAAAGTTTCTCTCATGGCTCTCATTGCCATCATCTTCGCCGTTGTCTCCGTCGCCGCTCAGGAGGCTCCAGCCCCCAGCCCGACCTCCCCTGCCACCTCCATTGCTCCGTCGTTCGTCTCCGCTTGCCTCGCTGCCTTCGTTGCTATCGCCTTCGGATCTACTCTCAGGATCTGA

Coding sequence (CDS)

ATGGCCGCCGTTTCCAAAGTTTCTCTCATGGCTCTCATTGCCATCATCTTCGCCGTTGTCTCCGTCGCCGCTCAGGAGGCTCCAGCCCCCAGCCCGACCTCCCCTGCCACCTCCATTGCTCCGTCGTTCGTCTCCGCTTGCCTCGCTGCCTTCGTTGCTATCGCCTTCGGATCTACTCTCAGGATCTGA

Protein sequence

MAAVSKVSLMALIAIIFAVVSVAAQEAPAPSPTSPATSIAPSFVSACLAAFVAIAFGSTLRI
Homology
[Close]
BLAST of Lsi08G015690 vs. Swiss-Prot
Match: AGP15_ARATH (Arabinogalactan peptide 15 OS=Arabidopsis thaliana GN=AGP15 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.2e-06
Identity = 33/60 (55.00%), Postives = 46/60 (76.67%), Query Frame = 1 

Query: 3  AVSKVSLMALIAIIFAVVSVAAQEAPAPSPTSPATSIAPSFVSACLAAFVAIAFGSTLRI 62
          A+SK S++ L+ +I +VV+ A  EAPAPSPTS +++I+ SFVSA +AA  A+ FGS LRI
Sbjct: 2  AISKASIVVLMMVIISVVASAQSEAPAPSPTSGSSAISASFVSAGVAAVAALVFGSALRI 61

[Close]
BLAST of Lsi08G015690 vs. TrEMBL
Match: A0A0A0LKU1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G351840 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 3.8e-15
Identity = 53/62 (85.48%), Postives = 59/62 (95.16%), Query Frame = 1 

Query: 1   MAAVSKVSLMALIAIIFAVVSVAAQEAPAPSPTSPATSIAPSFVSACLAAFVAIAFGSTL 60
           MAA+SKVSL+ALIA+IFA+ SVAAQEAPAPSP SPATSIAPS VSACLAAF+A+AFGSTL
Sbjct: 67  MAALSKVSLLALIALIFALSSVAAQEAPAPSPASPATSIAPSAVSACLAAFLALAFGSTL 126

Query: 61  RI 63
           RI
Sbjct: 127 RI 128

[Close]
BLAST of Lsi08G015690 vs. TrEMBL
Match: Q96504_CUCSA (CRG16 OS=Cucumis sativus GN=Csa_4G645890 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.9e-07
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 1 

Query: 1  MAAVSKVSLMALIAIIFAVVSVA---AQEAPAPSPTSPATSIAPSFVSACLAAFVAIAFG 60
          MAAVSKVS MAL+A++FAV+SVA   + E+PAP P SPA S+ PS   AC+ AF+A+ FG
Sbjct: 1  MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 60

Query: 61 STLR 62
          S L+
Sbjct: 61 SALK 64

[Close]
BLAST of Lsi08G015690 vs. TrEMBL
Match: A0A072VDT0_MEDTR (Transmembrane protein, putative OS=Medicago truncatula GN=MTR_1g016850 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 7.3e-06
Identity = 37/61 (60.66%), Postives = 50/61 (81.97%), Query Frame = 1 

Query: 3  AVSKVSLMALIAIIFAVVSVA-AQEAPAPSPTSPATSIAPSFVSACLAAFVAIAFGSTLR 62
          A +K  L+A +A+ FAV+S+A A EAPAPSPTSPAT+++PSF++  +AA VA+A GSTLR
Sbjct: 2  ASTKTMLLATMAVFFAVISIASAAEAPAPSPTSPATAVSPSFIAGVVAAVVALA-GSTLR 61

[Close]
BLAST of Lsi08G015690 vs. TAIR10
Match: AT5G11740.1 (AT5G11740.1 arabinogalactan protein 15)

HSP 1 Score: 53.1 bits (126), Expect = 6.9e-08
Identity = 33/60 (55.00%), Postives = 46/60 (76.67%), Query Frame = 1 

Query: 3  AVSKVSLMALIAIIFAVVSVAAQEAPAPSPTSPATSIAPSFVSACLAAFVAIAFGSTLRI 62
          A+SK S++ L+ +I +VV+ A  EAPAPSPTS +++I+ SFVSA +AA  A+ FGS LRI
Sbjct: 2  AISKASIVVLMMVIISVVASAQSEAPAPSPTSGSSAISASFVSAGVAAVAALVFGSALRI 61

[Close]
BLAST of Lsi08G015690 vs. NCBI nr
Match: gi|700207284|gb|KGN62403.1| (hypothetical protein Csa_2G351840 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 5.5e-15
Identity = 53/62 (85.48%), Postives = 59/62 (95.16%), Query Frame = 1 

Query: 1   MAAVSKVSLMALIAIIFAVVSVAAQEAPAPSPTSPATSIAPSFVSACLAAFVAIAFGSTL 60
           MAA+SKVSL+ALIA+IFA+ SVAAQEAPAPSP SPATSIAPS VSACLAAF+A+AFGSTL
Sbjct: 67  MAALSKVSLLALIALIFALSSVAAQEAPAPSPASPATSIAPSAVSACLAAFLALAFGSTL 126

Query: 61  RI 63
           RI
Sbjct: 127 RI 128

[Close]
BLAST of Lsi08G015690 vs. NCBI nr
Match: gi|1669529|dbj|BAA08394.1| (CRG16 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 4.2e-07
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 1 

Query: 1  MAAVSKVSLMALIAIIFAVVSVA---AQEAPAPSPTSPATSIAPSFVSACLAAFVAIAFG 60
          MAAVSKVS MAL+A++FAV+SVA   + E+PAP P SPA S+ PS   AC+ AF+A+ FG
Sbjct: 1  MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 60

Query: 61 STLR 62
          S L+
Sbjct: 61 SALK 64

The following BLAST results are available for this feature:
BLAST of Lsi08G015690 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AGP15_ARATH1.2e-0655.00Arabinogalactan peptide 15 OS=Arabidopsis thaliana GN=AGP15 PE=1 SV=1[more]
BLAST of Lsi08G015690 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKU1_CUCSA3.8e-1585.48Uncharacterized protein OS=Cucumis sativus GN=Csa_2G351840 PE=4 SV=1[more]
Q96504_CUCSA2.9e-0759.38CRG16 OS=Cucumis sativus GN=Csa_4G645890 PE=2 SV=1[more]
A0A072VDT0_MEDTR7.3e-0660.66Transmembrane protein, putative OS=Medicago truncatula GN=MTR_1g016850 PE=4 SV=1[more]
BLAST of Lsi08G015690 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G11740.16.9e-0855.00 arabinogalactan protein 15[more]
BLAST of Lsi08G015690 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207284|gb|KGN62403.1|5.5e-1585.48hypothetical protein Csa_2G351840 [Cucumis sativus][more]
gi|1669529|dbj|BAA08394.1|4.2e-0759.38CRG16 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G015690.1Lsi08G015690.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi08G015690Cucurbita maxima (Rimu)cmalsiB032
Lsi08G015690Cucurbita maxima (Rimu)cmalsiB184
Lsi08G015690Cucurbita maxima (Rimu)cmalsiB456
Lsi08G015690Cucurbita maxima (Rimu)cmalsiB739
Lsi08G015690Cucurbita moschata (Rifu)cmolsiB020
Lsi08G015690Cucurbita moschata (Rifu)cmolsiB175
Lsi08G015690Cucurbita moschata (Rifu)cmolsiB731
Lsi08G015690Cucurbita pepo (Zucchini)cpelsiB100
Lsi08G015690Cucurbita pepo (Zucchini)cpelsiB477
Lsi08G015690Cucurbita pepo (Zucchini)cpelsiB644
Lsi08G015690Cucurbita pepo (Zucchini)cpelsiB685
Lsi08G015690Wild cucumber (PI 183967)cpilsiB141
Lsi08G015690Wild cucumber (PI 183967)cpilsiB316
Lsi08G015690Cucumber (Chinese Long) v2culsiB142
Lsi08G015690Cucumber (Chinese Long) v2culsiB317
Lsi08G015690Melon (DHL92) v3.5.1lsimeB469
Lsi08G015690Melon (DHL92) v3.5.1lsimeB488
Lsi08G015690Watermelon (Charleston Gray)lsiwcgB432
Lsi08G015690Watermelon (Charleston Gray)lsiwcgB438
Lsi08G015690Watermelon (97103) v1lsiwmB465
Lsi08G015690Watermelon (97103) v1lsiwmB482
Lsi08G015690Cucumber (Gy14) v2cgyblsiB129
Lsi08G015690Cucumber (Gy14) v2cgyblsiB289
Lsi08G015690Melon (DHL92) v3.6.1lsimedB489
Lsi08G015690Melon (DHL92) v3.6.1lsimedB507
Lsi08G015690Silver-seed gourdcarlsiB164
Lsi08G015690Silver-seed gourdcarlsiB295
Lsi08G015690Silver-seed gourdcarlsiB637
Lsi08G015690Silver-seed gourdcarlsiB710
Lsi08G015690Cucumber (Chinese Long) v3cuclsiB155
Lsi08G015690Cucumber (Chinese Long) v3cuclsiB336
Lsi08G015690Watermelon (97103) v2lsiwmbB437
Lsi08G015690Watermelon (97103) v2lsiwmbB444
Lsi08G015690Wax gourdlsiwgoB591
Lsi08G015690Wax gourdlsiwgoB627
Lsi08G015690Bottle gourd (USVL1VR-Ls)lsilsiB148
Lsi08G015690Bottle gourd (USVL1VR-Ls)lsilsiB166
Lsi08G015690Cucumber (Gy14) v1cgylsiB571
Lsi08G015690Cucumber (Gy14) v1cgylsiB637