Lsi08G015410.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi08G015410.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Phytosulfokines, putative
Location	chr08 : 23438615 .. 23439560 (-)
Sequence length	845

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGGAAAAAAAACCATAAACAGCGTATAGGGTGTGGCCAACGTTGAAAACAGTATCTCGAAATCTCCCACTCATCCGTTACGTCCCGTAATTATTTCTGCCAGCGATGATATTTCAATTCTGTGTTTAAAACTGAGAATTACAATCCTTCTTCACCCACTCTTCATTGCAAATCAAAATTCCAAACAAATTCAAATCACAAAATGTCGAAGCTCGCGGCTCTCTTCACCATTGCAGCGCTTGTAACAATGTCCCTCATCATTCTGCCCTCCTCCGAAGCTCGTCCCGTCGCTACATTCACCACCATTTCCCTCAAACCCAATAATCCAGTAAGTTCCCAAAATCTCCCTTCAAAACTAATTTTCCCAATTTAATCCATTTTCAATTATTCTTTAATTAATTTCATGCGTAATAATATCTCTTTAATTAGGTCGTTTCTCAAGAGACTATTGCTCACAACGACGGATCGTGTGACGGACAGGAGAAAGAAGATTGCCTGATTAGAAGAACATTAGAAGCTCATATTGATTACATCTATACCAGTGATCAAACCAAGCCATGAACTACTGCTCTGCAAAAATAGGGAAATTTATATTTTCTCTGATCATTAATTACAGTTTCATTATTAAATAAAGTAAATCAGTTCGCTGGAGTTTTCATTCTTCTTCTTCTGTTTGTTTTTCGGTTCGGCGATTTACGAACGAACAGACTGCCGGGCCGGTTCGTGGTCCTGACAGGCCACAGTTTCTATAACGAGACTGAGTTAGGAATTGAAGCGGTTTAACATCAAATCAAATTGGTTATTTTGGGATATATTTTCTCTTTTTGGCGATAACTATTCTTTACCTGAACTTATTTTCAACCACTCACATGCCATGTACATGCTGTTTGAAGAAAATTACCATTTTTTTCTTTTTTGTTGAGTACAAAGAAAATTAATTATTAC

mRNA sequence

AAAGGAAAAAAAACCATAAACAGCGTATAGGGTGTGGCCAACGTTGAAAACAGTATCTCGAAATCTCCCACTCATCCGTTACGTCCCGTAATTATTTCTGCCAGCGATGATATTTCAATTCTGTGTTTAAAACTGAGAATTACAATCCTTCTTCACCCACTCTTCATTGCAAATCAAAATTCCAAACAAATTCAAATCACAAAATGTCGAAGCTCGCGGCTCTCTTCACCATTGCAGCGCTTGTAACAATGTCCCTCATCATTCTGCCCTCCTCCGAAGCTCGTCCCGTCGCTACATTCACCACCATTTCCCTCAAACCCAATAATCCAGTCGTTTCTCAAGAGACTATTGCTCACAACGACGGATCGTGTGACGGACAGGAGAAAGAAGATTGCCTGATTAGAAGAACATTAGAAGCTCATATTGATTACATCTATACCAGTGATCAAACCAAGCCATGAACTACTGCTCTGCAAAAATAGGGAAATTTATATTTTCTCTGATCATTAATTACAGTTTCATTATTAAATAAAGTAAATCAGTTCGCTGGAGTTTTCATTCTTCTTCTTCTGTTTGTTTTTCGGTTCGGCGATTTACGAACGAACAGACTGCCGGGCCGGTTCGTGGTCCTGACAGGCCACAGTTTCTATAACGAGACTGAGTTAGGAATTGAAGCGGTTTAACATCAAATCAAATTGGTTATTTTGGGATATATTTTCTCTTTTTGGCGATAACTATTCTTTACCTGAACTTATTTTCAACCACTCACATGCCATGTACATGCTGTTTGAAGAAAATTACCATTTTTTTCTTTTTTGTTGAGTACAAAGAAAATTAATTATTAC

Coding sequence (CDS)

ATGTCGAAGCTCGCGGCTCTCTTCACCATTGCAGCGCTTGTAACAATGTCCCTCATCATTCTGCCCTCCTCCGAAGCTCGTCCCGTCGCTACATTCACCACCATTTCCCTCAAACCCAATAATCCAGTCGTTTCTCAAGAGACTATTGCTCACAACGACGGATCGTGTGACGGACAGGAGAAAGAAGATTGCCTGATTAGAAGAACATTAGAAGCTCATATTGATTACATCTATACCAGTGATCAAACCAAGCCATGA

Protein sequence

MSKLAALFTIAALVTMSLIILPSSEARPVATFTTISLKPNNPVVSQETIAHNDGSCDGQEKEDCLIRRTLEAHIDYIYTSDQTKP

Homology

[Close]

BLAST of Lsi08G015410.1 vs. TrEMBL
Match: A0A0A0LR23_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G354080 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.1e-11
Identity = 52/89 (58.43%), Postives = 60/89 (67.42%), Query Frame = 1


Query: 1  MSK-LAALFT-IAALVT-MSLIILPSSEARPVATFTTISLKPNNPVVSQETIAHNDGSCD 60
          MSK LA+L T IAAL T MSLII+PSSE RP+ +F  I     N         +NDGSC+
Sbjct: 1  MSKNLASLTTTIAALATIMSLIIVPSSEGRPIPSFELIPEFATNH--------NNDGSCE 60

Query: 61 GQEKEDCLIRRTLEAHIDYIYTSDQ-TKP 86
          G  KEDCLIRRTL+AH DY+YT D  TKP
Sbjct: 61 GSGKEDCLIRRTLQAHTDYVYTCDNPTKP 81

[Close]

BLAST of Lsi08G015410.1 vs. TrEMBL
Match: M5XJI1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022582mg PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-06
Identity = 41/83 (49.40%), Postives = 48/83 (57.83%), Query Frame = 1


Query: 1  MSKL-AALFTIAALVTMSLIILPSSEARPVATFTTISLKPNNPVVSQETIAHNDG---SC 60
          M+KL   LFTIA L++  L    S  ARP   FT  +LK        E IA  DG   SC
Sbjct: 1  MAKLITTLFTIALLLSFQL----SLAARPDPAFTNAALKTQQQDKEAEAIAVEDGGEISC 60

Query: 61 DGQEKEDCLIRRTLEAHIDYIYT 80
           G E E+CL+RRTL AH+DYIYT
Sbjct: 61 AGLEMEECLMRRTLAAHVDYIYT 79

[Close]

BLAST of Lsi08G015410.1 vs. TAIR10
Match: AT4G37720.1 (AT4G37720.1 phytosulfokine 6 precursor)

HSP 1 Score: 48.9 bits (115), Expect = 1.8e-06
Identity = 33/84 (39.29%), Postives = 49/84 (58.33%), Query Frame = 1


Query: 1  MSKLAALFTIAALVTMSLIILPSSEARP----VATFTTISLKPNNPVVSQETIAHNDG-S 60
          M+ L+ L TIA L+  +++   +  ARP     A+FTT      +  + +  +    G S
Sbjct: 1  MANLSTLITIALLLCATML---TCSARPEPAYFASFTTSPADTLSLEMIESKLHEVAGES 60

Query: 61 CDGQEKEDCLIRRTLEAHIDYIYT 80
          CD ++ EDCL+RRTL AH+DYIYT
Sbjct: 61 CDKEDDEDCLVRRTLTAHLDYIYT 81

[Close]

BLAST of Lsi08G015410.1 vs. NCBI nr
Match: gi|700207312|gb|KGN62431.1| (hypothetical protein Csa_2G354080 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 3.0e-11
Identity = 52/89 (58.43%), Postives = 60/89 (67.42%), Query Frame = 1


Query: 1  MSK-LAALFT-IAALVT-MSLIILPSSEARPVATFTTISLKPNNPVVSQETIAHNDGSCD 60
          MSK LA+L T IAAL T MSLII+PSSE RP+ +F  I     N         +NDGSC+
Sbjct: 1  MSKNLASLTTTIAALATIMSLIIVPSSEGRPIPSFELIPEFATNH--------NNDGSCE 60

Query: 61 GQEKEDCLIRRTLEAHIDYIYTSDQ-TKP 86
          G  KEDCLIRRTL+AH DY+YT D  TKP
Sbjct: 61 GSGKEDCLIRRTLQAHTDYVYTCDNPTKP 81

[Close]

BLAST of Lsi08G015410.1 vs. NCBI nr
Match: gi|698458758|ref|XP_009781130.1| (PREDICTED: phytosulfokines-like [Nicotiana sylvestris])

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-07
Identity = 37/85 (43.53%), Postives = 50/85 (58.82%), Query Frame = 1


Query: 1  MSKLAALFTIAALVTMSLIILPSSEARPVATFTTISLKPNNPVVSQETIAHNDGSCDGQE 60
          MSK +ALF +A L+  SL     S ARP +T      K        + + +++G C+G E
Sbjct: 1  MSKFSALFLVAILLCFSL----KSAARPDSTLMKAQFKD----ARDDKVENDEGICEGVE 60

Query: 61 KEDCLIRRTLEAHIDYIYTSDQTKP 86
          +EDCL RRT+EAHIDYIYT  +  P
Sbjct: 61 EEDCLKRRTMEAHIDYIYTQSKGHP 77

[Close]

BLAST of Lsi08G015410.1 vs. NCBI nr
Match: gi|596258640|ref|XP_007224875.1| (hypothetical protein PRUPE_ppa022582mg [Prunus persica])

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-06
Identity = 41/83 (49.40%), Postives = 48/83 (57.83%), Query Frame = 1


Query: 1  MSKL-AALFTIAALVTMSLIILPSSEARPVATFTTISLKPNNPVVSQETIAHNDG---SC 60
          M+KL   LFTIA L++  L    S  ARP   FT  +LK        E IA  DG   SC
Sbjct: 1  MAKLITTLFTIALLLSFQL----SLAARPDPAFTNAALKTQQQDKEAEAIAVEDGGEISC 60

Query: 61 DGQEKEDCLIRRTLEAHIDYIYT 80
           G E E+CL+RRTL AH+DYIYT
Sbjct: 61 AGLEMEECLMRRTLAAHVDYIYT 79

[Close]

BLAST of Lsi08G015410.1 vs. NCBI nr
Match: gi|1009154663|ref|XP_015895296.1| (PREDICTED: phytosulfokines 3-like [Ziziphus jujuba])

HSP 1 Score: 60.1 bits (144), Expect = 2.2e-06
Identity = 33/70 (47.14%), Postives = 41/70 (58.57%), Query Frame = 1


Query: 18 LIILPSSEARPVA-TFTTISLKPNNP-VVSQETIAHNDGSCDGQEKEDCLIRRTLEAHID 77
          L++L  +E RP+  T    S  PN P  +S E     DG C G E E+CLIRR++ AH D
Sbjct: 12 LLLLSCAETRPIPNTILQESAYPNIPNALSPEEAIMEDGGCKGLENEECLIRRSMAAHTD 71

Query: 78 YIYTSDQTKP 86
          YIYT D T P
Sbjct: 72 YIYTQDITGP 81

[Close]

BLAST of Lsi08G015410.1 vs. NCBI nr
Match: gi|719971185|ref|XP_010273404.1| (PREDICTED: phytosulfokines [Nelumbo nucifera])

HSP 1 Score: 59.7 bits (143), Expect = 2.9e-06
Identity = 36/85 (42.35%), Postives = 48/85 (56.47%), Query Frame = 1


Query: 1  MSKLAALFTIAALVTMSLIILPSSEARPVATFTTISLKPNNPVVSQETIAHNDGSCDGQE 60
          MSK  ALF +A L+ +SL    +  ARP  T    S+    P    +   H D +CDG  
Sbjct: 1  MSKATALFVVALLLFVSL----TQAARPEPTLPNDSVVNTQP--GDDADVHVDVTCDGIG 60

Query: 61 KEDCLIRRTLEAHIDYIYTSDQTKP 86
          +++CL+RRTL AH DYIYT D  +P
Sbjct: 61 EDECLMRRTLTAHTDYIYTQDNGRP 79

The following BLAST results are available for this feature:

BLAST of Lsi08G015410.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi08G015410.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LR23_CUCSA	2.1e-11	58.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G354080 PE=4 SV=1	[more]
M5XJI1_PRUPE	1.2e-06	49.40	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022582mg PE=4 SV=1	[more]

BLAST of Lsi08G015410.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G37720.1	1.8e-06	39.29	phytosulfokine 6 precursor	[more]

BLAST of Lsi08G015410.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700207312\|gb\|KGN62431.1\|	3.0e-11	58.43	hypothetical protein Csa_2G354080 [Cucumis sativus]	[more]
gi\|698458758\|ref\|XP_009781130.1\|	1.2e-07	43.53	PREDICTED: phytosulfokines-like [Nicotiana sylvestris]	[more]
gi\|596258640\|ref\|XP_007224875.1\|	1.7e-06	49.40	hypothetical protein PRUPE_ppa022582mg [Prunus persica]	[more]
gi\|1009154663\|ref\|XP_015895296.1\|	2.2e-06	47.14	PREDICTED: phytosulfokines 3-like [Ziziphus jujuba]	[more]
gi\|719971185\|ref\|XP_010273404.1\|	2.9e-06	42.35	PREDICTED: phytosulfokines [Nelumbo nucifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0008283	cell proliferation

Vocabulary: **Molecular Function**
Term	Definition
GO:0008083	growth factor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005576	extracellular region

Vocabulary: **INTERPRO**
Term	Definition
IPR009438	Phytosulfokine

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008283	cell proliferation
biological_process	GO:0040007	growth
biological_process	GO:0007165	signal transduction
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0008083	growth factor activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi08G015410	Lsi08G015410	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi08G015410.1.three_prime_UTR.1	Lsi08G015410.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi08G015410.1.CDS.2	Lsi08G015410.1.CDS.2	CDS
Lsi08G015410.1.CDS.1	Lsi08G015410.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi08G015410.1.five_prime_UTR.1	Lsi08G015410.1.five_prime_UTR.1	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi08G015410.1	Lsi08G015410.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009438	Phytosulfokine	PFAM	PF06404	PSK	coord: 45..83 score: 1.6
None	No IPR available	PANTHER	PTHR33285	FAMILY NOT NAMED	coord: 1..85 score: 2.3
None	No IPR available	PANTHER	PTHR33285:SF1	GROWTH FACTOR PROTEIN-RELATED	coord: 1..85 score: 2.3