Lsi07G011280.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G011280.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	DUF761 domain protein
Location	chr07 : 16730562 .. 16730957 (-)
Sequence length	396

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAGAAGAGATCGCCGATGGCGCTCCGCCTGAAGAAGTCACTGACGAAACTCACTGCATTTGTCCGCCTCTGCCTCGTTCGCCGGCAACGTTCCCAGCGGCTGAGATCATTCGTTTCCGATGATCGGACGGTAGGAATACAGATCGTCTTGGAAGATCAGAGGAGAATCACTGAGAATTCTTCTATGAGAAAGCTTGAGCGTGCTTCGAGTTCAAGATACGGAAGCTATGATGACGATGTTGATCTGCAAGCGGAGATTTTCATTGAAAATTTCCGCCGTCAATTGAGGTTAGAAAGACAAATTTCTTTGCAATTGAGGTATTATAGAGTTAATAGCTACGAAACAGAGCATGAAGAGAGATCTCCGCTGGTTAAGCCGTCGATTCGATGA

mRNA sequence

ATGGCAGAGAAGAGATCGCCGATGGCGCTCCGCCTGAAGAAGTCACTGACGAAACTCACTGCATTTGTCCGCCTCTGCCTCGTTCGCCGGCAACGTTCCCAGCGGCTGAGATCATTCGTTTCCGATGATCGGACGGTAGGAATACAGATCGTCTTGGAAGATCAGAGGAGAATCACTGAGAATTCTTCTATGAGAAAGCTTGAGCGTGCTTCGAGTTCAAGATACGGAAGCTATGATGACGATGTTGATCTGCAAGCGGAGATTTTCATTGAAAATTTCCGCCGTCAATTGAGGTTAGAAAGACAAATTTCTTTGCAATTGAGGTATTATAGAGTTAATAGCTACGAAACAGAGCATGAAGAGAGATCTCCGCTGGTTAAGCCGTCGATTCGATGA

Coding sequence (CDS)

ATGGCAGAGAAGAGATCGCCGATGGCGCTCCGCCTGAAGAAGTCACTGACGAAACTCACTGCATTTGTCCGCCTCTGCCTCGTTCGCCGGCAACGTTCCCAGCGGCTGAGATCATTCGTTTCCGATGATCGGACGGTAGGAATACAGATCGTCTTGGAAGATCAGAGGAGAATCACTGAGAATTCTTCTATGAGAAAGCTTGAGCGTGCTTCGAGTTCAAGATACGGAAGCTATGATGACGATGTTGATCTGCAAGCGGAGATTTTCATTGAAAATTTCCGCCGTCAATTGAGGTTAGAAAGACAAATTTCTTTGCAATTGAGGTATTATAGAGTTAATAGCTACGAAACAGAGCATGAAGAGAGATCTCCGCTGGTTAAGCCGTCGATTCGATGA

Protein sequence

MAEKRSPMALRLKKSLTKLTAFVRLCLVRRQRSQRLRSFVSDDRTVGIQIVLEDQRRITENSSMRKLERASSSRYGSYDDDVDLQAEIFIENFRRQLRLERQISLQLRYYRVNSYETEHEERSPLVKPSIR

Homology

[Close]

BLAST of Lsi07G011280.1 vs. TrEMBL
Match: A0A0A0L4Z8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004530 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.1e-40
Identity = 96/125 (76.80%), Postives = 111/125 (88.80%), Query Frame = 1


Query: 1   MAEKRSPMALRLKKSLTKLTAFVRLCLVRRQRSQRLRSFVSDD-RTVGIQIVLEDQRRIT 60
           MAEK+SPMA RL+K+L KL A +RLCL+ RQRS+RL SF SDD + VGI+IVLEDQ RI 
Sbjct: 1   MAEKKSPMASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIA 60

Query: 61  ENSSMRKLERASSSRYGSYDDDVDLQAEIFIENFRRQLRLERQISLQLRYYRVNSYETEH 120
           E+S +RKLERASSSRYG Y++DVD +AEIFIENFRRQLRLERQISLQLRYYRVNSYETE+
Sbjct: 61  ESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY 120

Query: 121 EERSP 125
           E+RSP
Sbjct: 121 EQRSP 125

[Close]

BLAST of Lsi07G011280.1 vs. TrEMBL
Match: A0A0A0L6A3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004520 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.6e-18
Identity = 69/127 (54.33%), Postives = 84/127 (66.14%), Query Frame = 1


Query: 8   MALRLKKSLTKLTAFVRLCLVRRQRS-QRLRSFVSDDRTVGIQIVLEDQRRITENSSMRK 67
           MALRL+++L KL AF+RLCL+ R+RS  R R+ + DD+T                   R 
Sbjct: 1   MALRLEETLNKLKAFLRLCLLLRRRSIYRTRNVLEDDQTA------------------RN 60

Query: 68  LERASSSRYGS---YDDDVDLQAEIFIENFRRQLRLERQISLQLRYYRV--NSYETEHEE 127
           LER SSSRY S   ++DDVD +AEIFIENFRRQLRLERQISLQLR Y V  NS+ET++EE
Sbjct: 61  LERDSSSRYESCEEFEDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEE 109

Query: 128 RSPLVKP 129
             P   P
Sbjct: 121 ILPPPPP 109

[Close]

BLAST of Lsi07G011280.1 vs. TrEMBL
Match: B9ILG0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s03620g PE=4 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 2.7e-10
Identity = 43/87 (49.43%), Postives = 57/87 (65.52%), Query Frame = 1


Query: 33  SQRLRSFVSDDRTVGIQIVLEDQRRITENSSMRKLERASSSRYGSYDDDVDLQAEIFIEN 92
           S  +R    +DR +G+  V+ED     ++  +R LER  S    S DDDVD +AEIFI N
Sbjct: 109 SGTIRRLSFNDR-IGLHGVIEDVESDHQSKPVRALERVRSHDGSSSDDDVDKRAEIFITN 168

Query: 93  FRRQLRLERQISLQLRYYRVNSYETEH 120
           FRRQL +ERQ+SLQLRYYR NS+  ++
Sbjct: 169 FRRQLLMERQVSLQLRYYRGNSFGRDY 194

[Close]

BLAST of Lsi07G011280.1 vs. TrEMBL
Match: V4WAP0_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10010310mg PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 6.6e-09
Identity = 50/113 (44.25%), Postives = 69/113 (61.06%), Query Frame = 1


Query: 4   KRSPMALRLKKSLTKLTAFVRLCLVRRQRSQRLRSFVSDDRTVGIQIVLEDQRRITENSS 63
           K++   L +  SL KL+ +    + R   SQ  RS   +DR +G+Q  + D R   E SS
Sbjct: 29  KKAVKKLHMILSLIKLSKWNLASICRAGFSQSRRSLSFNDR-LGLQYCIVD-RDPDEGSS 88

Query: 64  MRKLERASSSRYGSYDDDVDLQAEIFIENFRRQLRLERQISLQLRYYRVNSYE 117
           +R L+R  S  Y   DDD+D +AEIFI NFRR+L  ERQ+SL+LRY R NS++
Sbjct: 89  VRVLQRTKSCAYDG-DDDIDRRAEIFITNFRRRLLYERQVSLELRYRRGNSFD 138

[Close]

BLAST of Lsi07G011280.1 vs. TrEMBL
Match: A0A067FVT7_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g039446mg PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-08
Identity = 50/113 (44.25%), Postives = 68/113 (60.18%), Query Frame = 1


Query: 4   KRSPMALRLKKSLTKLTAFVRLCLVRRQRSQRLRSFVSDDRTVGIQIVLEDQRRITENSS 63
           K++   L +  S  KL+ +    + R   SQ  RS   +DR +G+Q  + D R   E SS
Sbjct: 35  KKAVKKLHMILSRIKLSKWNLASICRAGFSQSRRSLSFNDR-LGLQYCIVD-RDPDEGSS 94

Query: 64  MRKLERASSSRYGSYDDDVDLQAEIFIENFRRQLRLERQISLQLRYYRVNSYE 117
           +R L+R  S  Y   DDD+D +AEIFI NFRRQL  ERQ+SL+LRY R NS++
Sbjct: 95  VRVLQRTKSCAYDG-DDDIDRRAEIFITNFRRQLLYERQVSLELRYRRGNSFD 144

[Close]

BLAST of Lsi07G011280.1 vs. NCBI nr
Match: gi|700200554|gb|KGN55687.1| (hypothetical protein Csa_3G004530 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 1.6e-40
Identity = 96/125 (76.80%), Postives = 111/125 (88.80%), Query Frame = 1


Query: 1   MAEKRSPMALRLKKSLTKLTAFVRLCLVRRQRSQRLRSFVSDD-RTVGIQIVLEDQRRIT 60
           MAEK+SPMA RL+K+L KL A +RLCL+ RQRS+RL SF SDD + VGI+IVLEDQ RI 
Sbjct: 1   MAEKKSPMASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIA 60

Query: 61  ENSSMRKLERASSSRYGSYDDDVDLQAEIFIENFRRQLRLERQISLQLRYYRVNSYETEH 120
           E+S +RKLERASSSRYG Y++DVD +AEIFIENFRRQLRLERQISLQLRYYRVNSYETE+
Sbjct: 61  ESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY 120

Query: 121 EERSP 125
           E+RSP
Sbjct: 121 EQRSP 125

[Close]

BLAST of Lsi07G011280.1 vs. NCBI nr
Match: gi|778688278|ref|XP_011652707.1| (PREDICTED: uncharacterized protein LOC105435054 [Cucumis sativus])

HSP 1 Score: 162.2 bits (409), Expect = 6.3e-37
Identity = 90/118 (76.27%), Postives = 104/118 (88.14%), Query Frame = 1


Query: 8   MALRLKKSLTKLTAFVRLCLVRRQRSQRLRSFVSDD-RTVGIQIVLEDQRRITENSSMRK 67
           MA RL+K+L KL A +RLCL+ RQRS+RL SF SDD + VGI+IVLEDQ RI E+S +RK
Sbjct: 1   MASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFVRK 60

Query: 68  LERASSSRYGSYDDDVDLQAEIFIENFRRQLRLERQISLQLRYYRVNSYETEHEERSP 125
           LERASSSRYG Y++DVD +AEIFIENFRRQLRLERQISLQLRYYRVNSYETE+E+RSP
Sbjct: 61  LERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQRSP 118

[Close]

BLAST of Lsi07G011280.1 vs. NCBI nr
Match: gi|700200553|gb|KGN55686.1| (hypothetical protein Csa_3G004520 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 2.3e-18
Identity = 69/127 (54.33%), Postives = 84/127 (66.14%), Query Frame = 1


Query: 8   MALRLKKSLTKLTAFVRLCLVRRQRS-QRLRSFVSDDRTVGIQIVLEDQRRITENSSMRK 67
           MALRL+++L KL AF+RLCL+ R+RS  R R+ + DD+T                   R 
Sbjct: 1   MALRLEETLNKLKAFLRLCLLLRRRSIYRTRNVLEDDQTA------------------RN 60

Query: 68  LERASSSRYGS---YDDDVDLQAEIFIENFRRQLRLERQISLQLRYYRV--NSYETEHEE 127
           LER SSSRY S   ++DDVD +AEIFIENFRRQLRLERQISLQLR Y V  NS+ET++EE
Sbjct: 61  LERDSSSRYESCEEFEDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEE 109

Query: 128 RSPLVKP 129
             P   P
Sbjct: 121 ILPPPPP 109

[Close]

BLAST of Lsi07G011280.1 vs. NCBI nr
Match: gi|566214045|ref|XP_002324391.2| (hypothetical protein POPTR_0018s03620g [Populus trichocarpa])

HSP 1 Score: 73.2 bits (178), Expect = 3.9e-10
Identity = 43/87 (49.43%), Postives = 57/87 (65.52%), Query Frame = 1


Query: 33  SQRLRSFVSDDRTVGIQIVLEDQRRITENSSMRKLERASSSRYGSYDDDVDLQAEIFIEN 92
           S  +R    +DR +G+  V+ED     ++  +R LER  S    S DDDVD +AEIFI N
Sbjct: 109 SGTIRRLSFNDR-IGLHGVIEDVESDHQSKPVRALERVRSHDGSSSDDDVDKRAEIFITN 168

Query: 93  FRRQLRLERQISLQLRYYRVNSYETEH 120
           FRRQL +ERQ+SLQLRYYR NS+  ++
Sbjct: 169 FRRQLLMERQVSLQLRYYRGNSFGRDY 194

[Close]

BLAST of Lsi07G011280.1 vs. NCBI nr
Match: gi|567916346|ref|XP_006450179.1| (hypothetical protein CICLE_v10010310mg, partial [Citrus clementina])

HSP 1 Score: 68.6 bits (166), Expect = 9.5e-09
Identity = 50/113 (44.25%), Postives = 69/113 (61.06%), Query Frame = 1


Query: 4   KRSPMALRLKKSLTKLTAFVRLCLVRRQRSQRLRSFVSDDRTVGIQIVLEDQRRITENSS 63
           K++   L +  SL KL+ +    + R   SQ  RS   +DR +G+Q  + D R   E SS
Sbjct: 29  KKAVKKLHMILSLIKLSKWNLASICRAGFSQSRRSLSFNDR-LGLQYCIVD-RDPDEGSS 88

Query: 64  MRKLERASSSRYGSYDDDVDLQAEIFIENFRRQLRLERQISLQLRYYRVNSYE 117
           +R L+R  S  Y   DDD+D +AEIFI NFRR+L  ERQ+SL+LRY R NS++
Sbjct: 89  VRVLQRTKSCAYDG-DDDIDRRAEIFITNFRRRLLYERQVSLELRYRRGNSFD 138

The following BLAST results are available for this feature:

BLAST of Lsi07G011280.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi07G011280.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4Z8_CUCSA	1.1e-40	76.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004530 PE=4 SV=1	[more]
A0A0A0L6A3_CUCSA	1.6e-18	54.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004520 PE=4 SV=1	[more]
B9ILG0_POPTR	2.7e-10	49.43	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s03620g PE=4 SV=2	[more]
V4WAP0_9ROSI	6.6e-09	44.25	Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10010310mg PE=...	[more]
A0A067FVT7_CITSI	1.1e-08	44.25	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g039446mg PE=4 S...	[more]

BLAST of Lsi07G011280.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi07G011280.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700200554\|gb\|KGN55687.1\|	1.6e-40	76.80	hypothetical protein Csa_3G004530 [Cucumis sativus]	[more]
gi\|778688278\|ref\|XP_011652707.1\|	6.3e-37	76.27	PREDICTED: uncharacterized protein LOC105435054 [Cucumis sativus]	[more]
gi\|700200553\|gb\|KGN55686.1\|	2.3e-18	54.33	hypothetical protein Csa_3G004520 [Cucumis sativus]	[more]
gi\|566214045\|ref\|XP_002324391.2\|	3.9e-10	49.43	hypothetical protein POPTR_0018s03620g [Populus trichocarpa]	[more]
gi\|567916346\|ref\|XP_006450179.1\|	9.5e-09	44.25	hypothetical protein CICLE_v10010310mg, partial [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR008480	DUF761_pln

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi07G011280	Lsi07G011280	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi07G011280.1.CDS.1	Lsi07G011280.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi07G011280.1	Lsi07G011280.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 79..109 score: 5.4
None	No IPR available	PANTHER	PTHR33098	FAMILY NOT NAMED	coord: 29..119 score: 5.9
None	No IPR available	PANTHER	PTHR33098:SF3	SUBFAMILY NOT NAMED	coord: 29..119 score: 5.9