Lsi07G011280 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G011280
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	DUF761 domain protein
Location	chr07 : 16730562 .. 16730957 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAGAAGAGATCGCCGATGGCGCTCCGCCTGAAGAAGTCACTGACGAAACTCACTGCATTTGTCCGCCTCTGCCTCGTTCGCCGGCAACGTTCCCAGCGGCTGAGATCATTCGTTTCCGATGATCGGACGGTAGGAATACAGATCGTCTTGGAAGATCAGAGGAGAATCACTGAGAATTCTTCTATGAGAAAGCTTGAGCGTGCTTCGAGTTCAAGATACGGAAGCTATGATGACGATGTTGATCTGCAAGCGGAGATTTTCATTGAAAATTTCCGCCGTCAATTGAGGTTAGAAAGACAAATTTCTTTGCAATTGAGGTATTATAGAGTTAATAGCTACGAAACAGAGCATGAAGAGAGATCTCCGCTGGTTAAGCCGTCGATTCGATGA

mRNA sequence

ATGGCAGAGAAGAGATCGCCGATGGCGCTCCGCCTGAAGAAGTCACTGACGAAACTCACTGCATTTGTCCGCCTCTGCCTCGTTCGCCGGCAACGTTCCCAGCGGCTGAGATCATTCGTTTCCGATGATCGGACGGTAGGAATACAGATCGTCTTGGAAGATCAGAGGAGAATCACTGAGAATTCTTCTATGAGAAAGCTTGAGCGTGCTTCGAGTTCAAGATACGGAAGCTATGATGACGATGTTGATCTGCAAGCGGAGATTTTCATTGAAAATTTCCGCCGTCAATTGAGGTTAGAAAGACAAATTTCTTTGCAATTGAGGTATTATAGAGTTAATAGCTACGAAACAGAGCATGAAGAGAGATCTCCGCTGGTTAAGCCGTCGATTCGATGA

Coding sequence (CDS)

ATGGCAGAGAAGAGATCGCCGATGGCGCTCCGCCTGAAGAAGTCACTGACGAAACTCACTGCATTTGTCCGCCTCTGCCTCGTTCGCCGGCAACGTTCCCAGCGGCTGAGATCATTCGTTTCCGATGATCGGACGGTAGGAATACAGATCGTCTTGGAAGATCAGAGGAGAATCACTGAGAATTCTTCTATGAGAAAGCTTGAGCGTGCTTCGAGTTCAAGATACGGAAGCTATGATGACGATGTTGATCTGCAAGCGGAGATTTTCATTGAAAATTTCCGCCGTCAATTGAGGTTAGAAAGACAAATTTCTTTGCAATTGAGGTATTATAGAGTTAATAGCTACGAAACAGAGCATGAAGAGAGATCTCCGCTGGTTAAGCCGTCGATTCGATGA

Protein sequence

MAEKRSPMALRLKKSLTKLTAFVRLCLVRRQRSQRLRSFVSDDRTVGIQIVLEDQRRITENSSMRKLERASSSRYGSYDDDVDLQAEIFIENFRRQLRLERQISLQLRYYRVNSYETEHEERSPLVKPSIR

Homology

[Close]

BLAST of Lsi07G011280 vs. TrEMBL
Match: A0A0A0L4Z8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004530 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.1e-40
Identity = 96/125 (76.80%), Postives = 111/125 (88.80%), Query Frame = 1


Query: 1   MAEKRSPMALRLKKSLTKLTAFVRLCLVRRQRSQRLRSFVSDD-RTVGIQIVLEDQRRIT 60
           MAEK+SPMA RL+K+L KL A +RLCL+ RQRS+RL SF SDD + VGI+IVLEDQ RI 
Sbjct: 1   MAEKKSPMASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIA 60

Query: 61  ENSSMRKLERASSSRYGSYDDDVDLQAEIFIENFRRQLRLERQISLQLRYYRVNSYETEH 120
           E+S +RKLERASSSRYG Y++DVD +AEIFIENFRRQLRLERQISLQLRYYRVNSYETE+
Sbjct: 61  ESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY 120

Query: 121 EERSP 125
           E+RSP
Sbjct: 121 EQRSP 125

[Close]

BLAST of Lsi07G011280 vs. TrEMBL
Match: A0A0A0L6A3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004520 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.6e-18
Identity = 69/127 (54.33%), Postives = 84/127 (66.14%), Query Frame = 1


Query: 8   MALRLKKSLTKLTAFVRLCLVRRQRS-QRLRSFVSDDRTVGIQIVLEDQRRITENSSMRK 67
           MALRL+++L KL AF+RLCL+ R+RS  R R+ + DD+T                   R 
Sbjct: 1   MALRLEETLNKLKAFLRLCLLLRRRSIYRTRNVLEDDQTA------------------RN 60

Query: 68  LERASSSRYGS---YDDDVDLQAEIFIENFRRQLRLERQISLQLRYYRV--NSYETEHEE 127
           LER SSSRY S   ++DDVD +AEIFIENFRRQLRLERQISLQLR Y V  NS+ET++EE
Sbjct: 61  LERDSSSRYESCEEFEDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEE 109

Query: 128 RSPLVKP 129
             P   P
Sbjct: 121 ILPPPPP 109

[Close]

BLAST of Lsi07G011280 vs. TrEMBL
Match: B9ILG0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s03620g PE=4 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 2.7e-10
Identity = 43/87 (49.43%), Postives = 57/87 (65.52%), Query Frame = 1


Query: 33  SQRLRSFVSDDRTVGIQIVLEDQRRITENSSMRKLERASSSRYGSYDDDVDLQAEIFIEN 92
           S  +R    +DR +G+  V+ED     ++  +R LER  S    S DDDVD +AEIFI N
Sbjct: 109 SGTIRRLSFNDR-IGLHGVIEDVESDHQSKPVRALERVRSHDGSSSDDDVDKRAEIFITN 168

Query: 93  FRRQLRLERQISLQLRYYRVNSYETEH 120
           FRRQL +ERQ+SLQLRYYR NS+  ++
Sbjct: 169 FRRQLLMERQVSLQLRYYRGNSFGRDY 194

[Close]

BLAST of Lsi07G011280 vs. TrEMBL
Match: V4WAP0_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10010310mg PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 6.6e-09
Identity = 50/113 (44.25%), Postives = 69/113 (61.06%), Query Frame = 1


Query: 4   KRSPMALRLKKSLTKLTAFVRLCLVRRQRSQRLRSFVSDDRTVGIQIVLEDQRRITENSS 63
           K++   L +  SL KL+ +    + R   SQ  RS   +DR +G+Q  + D R   E SS
Sbjct: 29  KKAVKKLHMILSLIKLSKWNLASICRAGFSQSRRSLSFNDR-LGLQYCIVD-RDPDEGSS 88

Query: 64  MRKLERASSSRYGSYDDDVDLQAEIFIENFRRQLRLERQISLQLRYYRVNSYE 117
           +R L+R  S  Y   DDD+D +AEIFI NFRR+L  ERQ+SL+LRY R NS++
Sbjct: 89  VRVLQRTKSCAYDG-DDDIDRRAEIFITNFRRRLLYERQVSLELRYRRGNSFD 138

[Close]

BLAST of Lsi07G011280 vs. TrEMBL
Match: A0A067FVT7_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g039446mg PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-08
Identity = 50/113 (44.25%), Postives = 68/113 (60.18%), Query Frame = 1


Query: 4   KRSPMALRLKKSLTKLTAFVRLCLVRRQRSQRLRSFVSDDRTVGIQIVLEDQRRITENSS 63
           K++   L +  S  KL+ +    + R   SQ  RS   +DR +G+Q  + D R   E SS
Sbjct: 35  KKAVKKLHMILSRIKLSKWNLASICRAGFSQSRRSLSFNDR-LGLQYCIVD-RDPDEGSS 94

Query: 64  MRKLERASSSRYGSYDDDVDLQAEIFIENFRRQLRLERQISLQLRYYRVNSYE 117
           +R L+R  S  Y   DDD+D +AEIFI NFRRQL  ERQ+SL+LRY R NS++
Sbjct: 95  VRVLQRTKSCAYDG-DDDIDRRAEIFITNFRRQLLYERQVSLELRYRRGNSFD 144

[Close]

BLAST of Lsi07G011280 vs. NCBI nr
Match: gi|700200554|gb|KGN55687.1| (hypothetical protein Csa_3G004530 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 1.6e-40
Identity = 96/125 (76.80%), Postives = 111/125 (88.80%), Query Frame = 1


Query: 1   MAEKRSPMALRLKKSLTKLTAFVRLCLVRRQRSQRLRSFVSDD-RTVGIQIVLEDQRRIT 60
           MAEK+SPMA RL+K+L KL A +RLCL+ RQRS+RL SF SDD + VGI+IVLEDQ RI 
Sbjct: 1   MAEKKSPMASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIA 60

Query: 61  ENSSMRKLERASSSRYGSYDDDVDLQAEIFIENFRRQLRLERQISLQLRYYRVNSYETEH 120
           E+S +RKLERASSSRYG Y++DVD +AEIFIENFRRQLRLERQISLQLRYYRVNSYETE+
Sbjct: 61  ESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY 120

Query: 121 EERSP 125
           E+RSP
Sbjct: 121 EQRSP 125

[Close]

BLAST of Lsi07G011280 vs. NCBI nr
Match: gi|778688278|ref|XP_011652707.1| (PREDICTED: uncharacterized protein LOC105435054 [Cucumis sativus])

HSP 1 Score: 162.2 bits (409), Expect = 6.3e-37
Identity = 90/118 (76.27%), Postives = 104/118 (88.14%), Query Frame = 1


Query: 8   MALRLKKSLTKLTAFVRLCLVRRQRSQRLRSFVSDD-RTVGIQIVLEDQRRITENSSMRK 67
           MA RL+K+L KL A +RLCL+ RQRS+RL SF SDD + VGI+IVLEDQ RI E+S +RK
Sbjct: 1   MASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFVRK 60

Query: 68  LERASSSRYGSYDDDVDLQAEIFIENFRRQLRLERQISLQLRYYRVNSYETEHEERSP 125
           LERASSSRYG Y++DVD +AEIFIENFRRQLRLERQISLQLRYYRVNSYETE+E+RSP
Sbjct: 61  LERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQRSP 118

[Close]

BLAST of Lsi07G011280 vs. NCBI nr
Match: gi|700200553|gb|KGN55686.1| (hypothetical protein Csa_3G004520 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 2.3e-18
Identity = 69/127 (54.33%), Postives = 84/127 (66.14%), Query Frame = 1


Query: 8   MALRLKKSLTKLTAFVRLCLVRRQRS-QRLRSFVSDDRTVGIQIVLEDQRRITENSSMRK 67
           MALRL+++L KL AF+RLCL+ R+RS  R R+ + DD+T                   R 
Sbjct: 1   MALRLEETLNKLKAFLRLCLLLRRRSIYRTRNVLEDDQTA------------------RN 60

Query: 68  LERASSSRYGS---YDDDVDLQAEIFIENFRRQLRLERQISLQLRYYRV--NSYETEHEE 127
           LER SSSRY S   ++DDVD +AEIFIENFRRQLRLERQISLQLR Y V  NS+ET++EE
Sbjct: 61  LERDSSSRYESCEEFEDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEE 109

Query: 128 RSPLVKP 129
             P   P
Sbjct: 121 ILPPPPP 109

[Close]

BLAST of Lsi07G011280 vs. NCBI nr
Match: gi|566214045|ref|XP_002324391.2| (hypothetical protein POPTR_0018s03620g [Populus trichocarpa])

HSP 1 Score: 73.2 bits (178), Expect = 3.9e-10
Identity = 43/87 (49.43%), Postives = 57/87 (65.52%), Query Frame = 1


Query: 33  SQRLRSFVSDDRTVGIQIVLEDQRRITENSSMRKLERASSSRYGSYDDDVDLQAEIFIEN 92
           S  +R    +DR +G+  V+ED     ++  +R LER  S    S DDDVD +AEIFI N
Sbjct: 109 SGTIRRLSFNDR-IGLHGVIEDVESDHQSKPVRALERVRSHDGSSSDDDVDKRAEIFITN 168

Query: 93  FRRQLRLERQISLQLRYYRVNSYETEH 120
           FRRQL +ERQ+SLQLRYYR NS+  ++
Sbjct: 169 FRRQLLMERQVSLQLRYYRGNSFGRDY 194

[Close]

BLAST of Lsi07G011280 vs. NCBI nr
Match: gi|567916346|ref|XP_006450179.1| (hypothetical protein CICLE_v10010310mg, partial [Citrus clementina])

HSP 1 Score: 68.6 bits (166), Expect = 9.5e-09
Identity = 50/113 (44.25%), Postives = 69/113 (61.06%), Query Frame = 1


Query: 4   KRSPMALRLKKSLTKLTAFVRLCLVRRQRSQRLRSFVSDDRTVGIQIVLEDQRRITENSS 63
           K++   L +  SL KL+ +    + R   SQ  RS   +DR +G+Q  + D R   E SS
Sbjct: 29  KKAVKKLHMILSLIKLSKWNLASICRAGFSQSRRSLSFNDR-LGLQYCIVD-RDPDEGSS 88

Query: 64  MRKLERASSSRYGSYDDDVDLQAEIFIENFRRQLRLERQISLQLRYYRVNSYE 117
           +R L+R  S  Y   DDD+D +AEIFI NFRR+L  ERQ+SL+LRY R NS++
Sbjct: 89  VRVLQRTKSCAYDG-DDDIDRRAEIFITNFRRRLLYERQVSLELRYRRGNSFD 138

The following BLAST results are available for this feature:

BLAST of Lsi07G011280 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi07G011280 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4Z8_CUCSA	1.1e-40	76.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004530 PE=4 SV=1	[more]
A0A0A0L6A3_CUCSA	1.6e-18	54.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004520 PE=4 SV=1	[more]
B9ILG0_POPTR	2.7e-10	49.43	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s03620g PE=4 SV=2	[more]
V4WAP0_9ROSI	6.6e-09	44.25	Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10010310mg PE=...	[more]
A0A067FVT7_CITSI	1.1e-08	44.25	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g039446mg PE=4 S...	[more]

BLAST of Lsi07G011280 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi07G011280 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700200554\|gb\|KGN55687.1\|	1.6e-40	76.80	hypothetical protein Csa_3G004530 [Cucumis sativus]	[more]
gi\|778688278\|ref\|XP_011652707.1\|	6.3e-37	76.27	PREDICTED: uncharacterized protein LOC105435054 [Cucumis sativus]	[more]
gi\|700200553\|gb\|KGN55686.1\|	2.3e-18	54.33	hypothetical protein Csa_3G004520 [Cucumis sativus]	[more]
gi\|566214045\|ref\|XP_002324391.2\|	3.9e-10	49.43	hypothetical protein POPTR_0018s03620g [Populus trichocarpa]	[more]
gi\|567916346\|ref\|XP_006450179.1\|	9.5e-09	44.25	hypothetical protein CICLE_v10010310mg, partial [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008480	DUF761_pln

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G011280.1	Lsi07G011280.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 79..109 score: 5.4
None	No IPR available	PANTHER	PTHR33098	FAMILY NOT NAMED	coord: 29..119 score: 5.9
None	No IPR available	PANTHER	PTHR33098:SF3	SUBFAMILY NOT NAMED	coord: 29..119 score: 5.9

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi07G011280	Silver-seed gourd	carlsiB389
Lsi07G011280	Silver-seed gourd	carlsiB621
Lsi07G011280	Cucumber (Chinese Long) v3	cuclsiB250
Lsi07G011280	Watermelon (97103) v2	lsiwmbB395
Lsi07G011280	Wax gourd	lsiwgoB575
Lsi07G011280	Cucumber (Gy14) v1	cgylsiB530
Lsi07G011280	Cucurbita maxima (Rimu)	cmalsiB324
Lsi07G011280	Cucurbita maxima (Rimu)	cmalsiB772
Lsi07G011280	Cucurbita moschata (Rifu)	cmolsiB313
Lsi07G011280	Cucurbita moschata (Rifu)	cmolsiB763
Lsi07G011280	Cucurbita pepo (Zucchini)	cpelsiB183
Lsi07G011280	Cucurbita pepo (Zucchini)	cpelsiB725
Lsi07G011280	Wild cucumber (PI 183967)	cpilsiB227
Lsi07G011280	Cucumber (Chinese Long) v2	culsiB228
Lsi07G011280	Melon (DHL92) v3.5.1	lsimeB446
Lsi07G011280	Watermelon (Charleston Gray)	lsiwcgB389
Lsi07G011280	Watermelon (97103) v1	lsiwmB429
Lsi07G011280	Cucumber (Gy14) v2	cgyblsiB217
Lsi07G011280	Melon (DHL92) v3.6.1	lsimedB462