Lsi07G010460.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G010460.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	DNA mismatch repair protein mutL
Location	chr07 : 15853078 .. 15858005 (+)
Sequence length	699

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAACTGTAATAAAGCATTTATTGTGTGCTTGAAATTTGTAACAAATTTATATTTTTTTTTGGGTTAGAATTCCACTTCATGTGTTCTTATTATATTTTTATACAAACATTCATGTGTATGACATAATAGGTACCCTGCATATTAGGGGTTAATTTATCAGATGTAGATCTTCTGGAGTTTCTTCATCAGGTAACTGCGGACCTTTGCGCTTTAATACAAAATTTAATTGTTTCATCCAGCTATTAATTTTATTTAGCTGTTATATTGTTCCCTAAACACCTGAATAATTGCAAATGTTGCTATGTCTGCATATATAAGCTTGCTGAGACGTTTTTTACTTTAATTTTTTTGGATTGAAAGCTTGCTGATACAGATGGCTCATCAACAATGCCACCATCCGTACTTCGAGTTCTTAATTCAAAGGCCTGCAGAGGTACATGCTTAAACTTGTATAATATGTACAGATACCATGGATCAAGGGAAATTAGATGCTGCGTGGATGAGGTTGACTTAAGCTTTTCCGGATGATATTCATGGGTTTAACTTTTATTTATTTATTTTTTGGAAAAAAGATACGACACTTTTCATTAAGGGAATGAAAAGAGACTAATGCTAAAACAATACAAGGATACTGGAAACAAAGACAAATGCAGAAATAAACAAACAAATACAACAAGAAACCAAAACACCAATATACTTAGAAAGTAGTGATGAAAGCATTCCAGCGACTATTCCCTGAATTGAGAACCCTTCAAATTTCTTAGAAAGAGAACACTAAGTAGAAGACTTGAGATTGAGCCAAATCAAAATGAGCATAAGGAGCGTAACTGCTTGAGCAGAATTTTGGAAAATACGCTGATTTCTTTCTAACCAGAGCTCACAAAGAATGTCCTTCACAATATTAACCCTAATTAAATAAGCTTTTGCATTCTACCAAATGCCACAAAGCAGTTGAAGCACATTTGTCTTCCAAGAATCAGAGAAAACCCGATGAATAGAGAAAGCATCAAATAACAAAAATCAGCAGCTTCGCAAATAAATACAGTCAAAGAAGATGTGGTTGAGATATTCTCCTTCCTTGAAACATAAGGAGCACACTCATGGTAAAAAACACCGTGACGACATCTTTTTCTGCAAAATTTCAGCCAAATTGAGACTACCATTTAACATGATGCGAATGAGTATAAACCATCATAGGTTGACCTAGTGGTAAAAAGGGAGATACAGTCTCAATAAATGGATAAGAGGTCATGGGTTCAATTCATGGTGGCCACCTACTTAGGAATTAATTTCCTATGAGTTTCTTTGACACTCAAATGTTGTAGGGTCAGACGGGTTGTCCTGTGAGATTAGTTGAGGTACGCGTAAACTAGCCTGGACACTCACGGATAATAAAAAAAAAATGCAAATGAATATATTGGTTTTCTTTTGGACTTTTTGACTTCCAGATTGCTTTAAATAAGGCATTGTCAATAATTGTTGAAGAAGCCAAGAGAGAAGATAAGGATTTCACCGAAAACAATCTTGAAGATTCAAGAGCCCAAAATCGAGCGTAATGAAGAGAGGTCAAAAAGAAGATTTTGAAACTCAACCACTTCTTCATCCTCCAAGAGTCTCCTGAAAATAATATTCCAAGAAGATGTTGAGACATCTCAATAAGAAGAAACTGCCCTGCTTGTATTAACAACTATGGCGAATAATCTTGGGAAGCTATTGTTAAGAGTACATCACAAAGCCAAGGATCCTTCCAAAATGAAACACAAGTACCATTTCCAACTTTGTAAATAGCAAGACTTTCCACCTTTTTCCAAGCTTTGGAAATGCTAACCCATGGCCTTTGAGGGCTAGACAACCCATTGCTTTTTGTATGCCAAACAAACTCATTGGAACCATGAATGCTAATAATAACTCTCCTCCAAAGTGCATTTGGTTCTTTTATAAATCTCCAATCTCCAACCCTATTTGGCGAGAAGGGCTTGGTTCCTTAGATGAAAAGCTCCAATAACAAGCCTCCATGAGTTTTAGCTTTTGACACCACCCATATAACCAAGTGATTGATCTTGCTATGTTCCTTCCTAGAAAAAATTCCGCATCAAACATTCAAGCTCCATACTAACAGAAGAAGGCATAAGAAAAATTGACATGTATTAAGTAGGAATATTAGCCAAAACCAAGCTTGCACAAAGCTAAGTGACCCCCTTGAAAGGGTAAATCTTTTAATCGTTCAATTTTCTTCTAAAATTTGTCAATTAGAGGCTGCCAAAAAGTAACACGTTTGGGATAACCACTAAGTGGTAAGCCAAGATAAAGAAAAGGCAAGGATTCCACCTTGCAGCCTTGAAGAATATTGAAGAAGCTTGGAATCATCCACACCTATCCCAATTAAAGGAGATTTCTCCCAATTGATCTTTTGCCCAGAACACCATTGAAAGAAATTAATACTCTTTAGAAAAATTTCAAACATTTGATCATCATACTTGCAAAACAGTAGAGTGTCATCCGCGAATTGCAAAATTGGCACATAAATGTTATCCCTTCCAACCATTAACCCTTCATAGACACCTCTAGCAAAGACGCTAAAAACTTCACTAATAAGTAAGGAAAGGAAAGGGGAAAGAGGATCCCCTTGTTTTATACCCCGAGATGCAAAAATTCGGCCTCTTGGTCTACCATTAATGAAGACTGAAAAATTAGGACACTGGATGCACCCTCGAAGCCACTCAATCCACTTGGAATGAAACCCTTTGTGGTGCAATACTTCCTTCAGAATATCCCAATCACACAATCAAAAGCTTTTTCAATATTTAGCTTCAAATTCAACCTTTCTTCTTCTTCACTCTATGTTCTTCCATAATTTCATTACCAATAAGGATGGGAACTAATATTCGTCTTCCTTCACACTTTGATAAGGAGAAATAATAGAAGACTTACCTCTTTTAATCTTACCGCAATAACCTTTGCTTGAATATTGTAAATGGAAGAAGTCAAACTTATGGGCCTAGATCTTTGACAAACTGGCTGTTTCTTTTTCTGTCTAAGGCAAATAAGTTTTCTTTTAGACATGAACACTAAAACTGATATCCTCCTTCAAAAGATGCCATAACTTGATGAAAAATTATGTTGTAAGCCATCGGTTCCACGGGCTTTATTCTTCTTGCCAAGAGATTTTACAGAGCATTCCAAATTTCTTCATCCGAAAATGGTCTAATTAATTTCATTTTTTGCAGTAGAAATTCTGCTCCATAGTAAGTTGTTTGGAAAAATATTATAACCCGGGATTTTATGATACAAGGCAGTAAAAAATCGAACTATTTCTTCTTCAGTTTCTTTATAAGTCTACAAATAAGTCCCATCGGAAGCTTGCAACTTAGAAGTTTCAAGTTAGAGATTTCCCTTTTCTTGCCGATGACATTTTGTGAAAAAAAACTTGTGTTATCAACTTAAAATCCTTCTTCAAGCGAAGAAATTTGGCATTTTTGAAGAGAATTTCTTTCCTCAGTCATATATAAAGACGAGTTCAGTTTGTGCCAAAGAACGAGAATTTAATTCTTGCAAAGACAAAGGATTCTCTTCTACTTTACTATCCCACGAAGCAATTGCTGCCAAGAGAGCCTTTTCTTTCAACTTCTGATTTGCTTCATTAACAGAAAACAACATCTTTAGAGAATCCTTCAAATTTCTGAGTTTGGTGTTGATTACATAGCCAGGCCAACCACTAGAACAATCTTGCACCAAAATACTCTCAATAAGCTTTCCACAATCAGATTATAGAAATTTAGGTGTACACAAATCAAATTCTAGATATTTTTATAATCTCAATATTTCCCTTGAGCCATGGGTTGATCTGATTAGAGAAAATGAGTTCAATTTATGGTGACCACCTATCTAGGATTTAATATCTTGAGTTTCCTTAGCACCCAAATATTGTAGGGTTAGGTTGGTTGTCCTGTGAGTTTAGTTGAAGTGCGTCCTAGTTATAGTTATCCCACGCTCATGGAATTTTTTTTTTTTTTTTTTTTAAGATACTTCCATCAAGTAGTATCTCACTTCTTTGGAGCTAGATCGATCCAAGTCTTCAAACTATTTGATGCACTTCCCTGCTTATCGTCTCATTTCTGAGCCTTGGGGAAAACAATAGTCTGTTGACTGCTAGTATCATGTGTGTATTTTCATTTTCATGTGGACCTTTCAGTGAAATTTTTTTTTTTTAATAATTGTTTGATCAGGTGCAATTATGTTTGGAGACTCTTTGTTACCTTCAGAGTGCTCCCTCATTGTTGAAGAACTGAAGCAGACTTCTCTGTGTTTCCAAGTGAGTGAATCATTTTTGAGTCTGTTTTCACAGTGACAAAATTTAATAAAAAAATTTTCTCCCTTTTCCCCTTTTTGGGGGTGGGAGGAAATGACTAGTAATTGACAAGTAATTGACAAGTATGAGATGTTAAATGTGCAGTGTGCCCATGGACGGCCAACGACAGTTCCTCTTGTGAACTTGGAGGCATTGCATAAGCAGATAAAGGAGCTGGAAATACTGGGCAAAAGTGGTTCAAATGGAACATGGAATGGTCTGGGACAACACGAGCTGAGCATAGAAAGGATGTTGCAGCGCTTGAGTTCGGCCGAAAGTTTATAGTACTCCTGGGAAATGCTGCCTTTTCATCGAGGAGACTAATTGCCCAGGGGCGGAAATACCAGTCTGCAGAAGATAATGGATTGAGTAGCATTGTTAGATCATGTATAGAACCAGAAGTTGGCGATGATGATTTGTCAAAAAAGAGCAGTGTTTCTGTAGTTTAGGTTTCCTTGGAGTTTTGGTTGTAATTCTTCCAATAAACATTATCTGCCCTCCATCTAAATATATTCTTTTGCAATATGGTGAATAAAGCTAAATGCATATATGCTTCTTAAAAGATTACTGAACGAA

mRNA sequence

ATGCAAACTGTACCCTGCATATTAGGGGTTAATTTATCAGATGTAGATCTTCTGGAGTTTCTTCATCAGCTTGCTGATACAGATGGCTCATCAACAATGCCACCATCCGTACTTCGAGTTCTTAATTCAAAGGCCTGCAGAGGTGCAATTATGTTTGGAGACTCTTTGTTACCTTCAGAGTGCTCCCTCATTGTTGAAGAACTGAAGCAGACTTCTCTGTGTTTCCAATGTGCCCATGGACGGCCAACGACAGTTCCTCTTGTGAACTTGGAGGCATTGCATAAGCAGATAAAGGAGCTGGAAATACTGGGCAAAAGTGGTTCAAATGGAACATGGAATGGTCTGGGACAACACGAGCTGAGCATAGAAAGGATGTTGCAGCGCTTGAGTTCGGCCGAAAGTTTATAGTACTCCTGGGAAATGCTGCCTTTTCATCGAGGAGACTAATTGCCCAGGGGCGGAAATACCAGTCTGCAGAAGATAATGGATTGAGTAGCATTGTTAGATCATGTATAGAACCAGAAGTTGGCGATGATGATTTGTCAAAAAAGAGCAGTGTTTCTGTAGTTTAGGTTTCCTTGGAGTTTTGGTTGTAATTCTTCCAATAAACATTATCTGCCCTCCATCTAAATATATTCTTTTGCAATATGGTGAATAAAGCTAAATGCATATATGCTTCTTAAAAGATTACTGAACGAA

Coding sequence (CDS)

ATGCAAACTGTACCCTGCATATTAGGGGTTAATTTATCAGATGTAGATCTTCTGGAGTTTCTTCATCAGCTTGCTGATACAGATGGCTCATCAACAATGCCACCATCCGTACTTCGAGTTCTTAATTCAAAGGCCTGCAGAGGTGCAATTATGTTTGGAGACTCTTTGTTACCTTCAGAGTGCTCCCTCATTGTTGAAGAACTGAAGCAGACTTCTCTGTGTTTCCAATGTGCCCATGGACGGCCAACGACAGTTCCTCTTGTGAACTTGGAGGCATTGCATAAGCAGATAAAGGAGCTGGAAATACTGGGCAAAAGTGGTTCAAATGGAACATGGAATGGTCTGGGACAACACGAGCTGAGCATAGAAAGGATGTTGCAGCGCTTGAGTTCGGCCGAAAGTTTATAG

Protein sequence

MQTVPCILGVNLSDVDLLEFLHQLADTDGSSTMPPSVLRVLNSKACRGAIMFGDSLLPSECSLIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEILGKSGSNGTWNGLGQHELSIERMLQRLSSAESL

Homology

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BLAST of Lsi07G010460.1 vs. Swiss-Prot
Match: MLH3_ARATH (DNA mismatch repair protein MLH3 OS=Arabidopsis thaliana GN=MLH3 PE=2 SV=2)

HSP 1 Score: 196.8 bits (499), Expect = 1.5e-49
Identity = 97/134 (72.39%), Postives = 112/134 (83.58%), Query Frame = 1


Query: 1    MQTVPCILGVNLSDVDLLEFLHQLADTDGSSTMPPSVLRVLNSKACRGAIMFGDSLLPSE 60
            +  VPCILGVNLSDVDLLEFL QLADTDGSST+PPSVLRVLNSKACRGAIMFGDSLLPSE
Sbjct: 1028 LNAVPCILGVNLSDVDLLEFLQQLADTDGSSTIPPSVLRVLNSKACRGAIMFGDSLLPSE 1087

Query: 61   CSLIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEILGKSGSNGTWNGLGQHEL 120
            CSLI++ LKQTSLCFQCAHGRPTTVPLV+L+ALHKQI +L           W+GL + E+
Sbjct: 1088 CSLIIDGLKQTSLCFQCAHGRPTTVPLVDLKALHKQIAKL------SGRQVWHGLQRREI 1147

Query: 121  SIERMLQRLSSAES 135
            +++R   RL +A+S
Sbjct: 1148 TLDRAKSRLDNAKS 1155

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BLAST of Lsi07G010460.1 vs. Swiss-Prot
Match: MLH3_HUMAN (DNA mismatch repair protein Mlh3 OS=Homo sapiens GN=MLH3 PE=1 SV=3)

HSP 1 Score: 70.1 bits (170), Expect = 2.1e-11
Identity = 46/114 (40.35%), Postives = 60/114 (52.63%), Query Frame = 1


Query: 19   EFLHQLADTDG-SSTMPPSVLRVLNSKACRGAIMFGDSLLPSECSLIVEELKQTSLCFQC 78
            E L  L  T G   T+P +V +VL S+AC GAI F D L   E   ++E L    L FQC
Sbjct: 1334 EQLELLQTTGGIQGTLPLTVQKVLASQACHGAIKFNDGLSLQESCRLIEALSSCQLPFQC 1393

Query: 79   AHGRPTTVPLVNLEAL--HKQIK-ELEILGKSGSNGTWNGLGQHELSIERMLQR 129
            AHGRP+ +PL +++ L   KQIK  L  L K      W   G+ E    + LQ+
Sbjct: 1394 AHGRPSMLPLADIDHLEQEKQIKPNLTKLRKMAQ--AWRLFGKAECDTRQSLQQ 1445

[Close]

BLAST of Lsi07G010460.1 vs. Swiss-Prot
Match: MLH3_YEAST (DNA mismatch repair protein MLH3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MLH3 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 8.0e-11
Identity = 29/62 (46.77%), Postives = 41/62 (66.13%), Query Frame = 1


Query: 30  SSTMPPSVLRVLNSKACRGAIMFGDSLLPSECSLIVEELKQTSLCFQCAHGRPTTVPLVN 89
           SS +P     +LNSKACR A+MFGD L   EC +++ +L +    F+CAHGRP+ VP+  
Sbjct: 654 SSCVPTVFHEILNSKACRSAVMFGDELTRQECIILISKLSRCHNPFECAHGRPSMVPIAE 713

Query: 90  LE 92
           L+
Sbjct: 714 LK 715

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BLAST of Lsi07G010460.1 vs. Swiss-Prot
Match: PMS1_SCHPO (DNA mismatch repair protein pms1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pms1 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.1e-07
Identity = 32/89 (35.96%), Postives = 46/89 (51.69%), Query Frame = 1


Query: 3   TVPCILGVNLSDVDLLEFLHQLADTDGSSTMPPSVLRVLNSKACRGAIMFGDSLLPSECS 62
           +VP    V     DLLE +  L++          + R+L SKACR ++M G +L  SE +
Sbjct: 704 SVPTSKNVIFDTSDLLEIISVLSEHPQIDPFSSRLERMLASKACRSSVMIGRALTISEMN 763

Query: 63  LIVEELKQTSLCFQCAHGRPTTVPLVNLE 92
            IV  L + S  + C HGRPT   L+ L+
Sbjct: 764 TIVRHLAELSKPWNCPHGRPTMRHLLRLK 792

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BLAST of Lsi07G010460.1 vs. TrEMBL
Match: A0A0A0L1I8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G000710 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 4.0e-65
Identity = 125/135 (92.59%), Postives = 130/135 (96.30%), Query Frame = 1


Query: 1    MQTVPCILGVNLSDVDLLEFLHQLADTDGSSTMPPSVLRVLNSKACRGAIMFGDSLLPSE 60
            +  VPCILGVNLSDVDLLEFLHQLADTDGS+TMPPSVLRVLNSKACRGAIMFGDSLLPSE
Sbjct: 1083 LMAVPCILGVNLSDVDLLEFLHQLADTDGSATMPPSVLRVLNSKACRGAIMFGDSLLPSE 1142

Query: 61   CSLIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEILGKSGSNGTWNGLGQHEL 120
            CSL+VEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEI G+SGSNGTWNGLG+ EL
Sbjct: 1143 CSLLVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEIHGRSGSNGTWNGLGRQEL 1202

Query: 121  SIERMLQRLSSAESL 136
            SIERMLQRLSSAE L
Sbjct: 1203 SIERMLQRLSSAEGL 1217

[Close]

BLAST of Lsi07G010460.1 vs. TrEMBL
Match: G7K187_MEDTR (DNA mismatch repair protein, carboxy-terminal domain protein OS=Medicago truncatula GN=MTR_5g024250 PE=4 SV=2)

HSP 1 Score: 213.4 bits (542), Expect = 1.7e-52
Identity = 105/131 (80.15%), Postives = 118/131 (90.08%), Query Frame = 1


Query: 4    VPCILGVNLSDVDLLEFLHQLADTDGSSTMPPSVLRVLNSKACRGAIMFGDSLLPSECSL 63
            VPCILGVNL+DVDLLEFL QLADTDGSSTMPPSV+R+LNSK+CRGAIMFGDSLLPSECSL
Sbjct: 1103 VPCILGVNLNDVDLLEFLQQLADTDGSSTMPPSVVRLLNSKSCRGAIMFGDSLLPSECSL 1162

Query: 64   IVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEILGKSGSNGTWNGLGQHELSIE 123
            +VEELK TSLCFQCAHGRPTTVPLVNLEAL  QI +L ++ KS SN  W+GL +HE+SI+
Sbjct: 1163 LVEELKHTSLCFQCAHGRPTTVPLVNLEALRNQIDKLGLMNKSSSN-KWHGLQRHEVSID 1222

Query: 124  RMLQRLSSAES 135
            R +QRLSSA S
Sbjct: 1223 RAVQRLSSANS 1232

[Close]

BLAST of Lsi07G010460.1 vs. TrEMBL
Match: F6I0J7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g00170 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 2.5e-51
Identity = 106/129 (82.17%), Postives = 114/129 (88.37%), Query Frame = 1


Query: 4    VPCILGVNLSDVDLLEFLHQLADTDGSSTMPPSVLRVLNSKACRGAIMFGDSLLPSECSL 63
            VPCILGVNLSDVDLLEFL QLADTDGSSTMPPSVLRVLN KACRGAIMFGD+LLPSECSL
Sbjct: 1091 VPCILGVNLSDVDLLEFLQQLADTDGSSTMPPSVLRVLNLKACRGAIMFGDALLPSECSL 1150

Query: 64   IVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEILGKSGSNGTWNGLGQHELSIE 123
            IVEELK+TSLCFQCAHGRPTTVPLVNLEALHKQI +L   G  GS   W+GL +HELS+E
Sbjct: 1151 IVEELKRTSLCFQCAHGRPTTVPLVNLEALHKQIAKLG-SGGGGSIELWHGLRRHELSLE 1210

Query: 124  RMLQRLSSA 133
            R   RL+S+
Sbjct: 1211 RAAHRLNSS 1218

[Close]

BLAST of Lsi07G010460.1 vs. TrEMBL
Match: W9RKQ1_9ROSA (DNA mismatch repair protein mutL OS=Morus notabilis GN=L484_007069 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 4.2e-51
Identity = 102/131 (77.86%), Postives = 115/131 (87.79%), Query Frame = 1


Query: 4    VPCILGVNLSDVDLLEFLHQLADTDGSSTMPPSVLRVLNSKACRGAIMFGDSLLPSECSL 63
            VPCILGVNLSD+DL+EFL QLADTDGSS +PPSVLR+LNSKACRGAIMFGDSLLPSECSL
Sbjct: 993  VPCILGVNLSDLDLMEFLQQLADTDGSSMIPPSVLRILNSKACRGAIMFGDSLLPSECSL 1052

Query: 64   IVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEILGKSGSNGTWNGLGQHELSIE 123
            I+ ELKQT+LCFQCAHGRPTTVPLVNLEALHKQI ++ ++     NG W+GL +HEL+IE
Sbjct: 1053 IIAELKQTALCFQCAHGRPTTVPLVNLEALHKQIAKIALM-NDDLNGLWHGLCRHELTIE 1112

Query: 124  RMLQRLSSAES 135
            R  QRLS A S
Sbjct: 1113 RAAQRLSLATS 1122

[Close]

BLAST of Lsi07G010460.1 vs. TrEMBL
Match: V7CM66_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G116900g PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 9.4e-51
Identity = 100/129 (77.52%), Postives = 116/129 (89.92%), Query Frame = 1


Query: 4    VPCILGVNLSDVDLLEFLHQLADTDGSSTMPPSVLRVLNSKACRGAIMFGDSLLPSECSL 63
            VPCILGV L+DVDLLEFL QLADTDGSSTMPPSV+RVLNSKACRGAIMFGDSLLPSECSL
Sbjct: 1094 VPCILGVKLNDVDLLEFLQQLADTDGSSTMPPSVIRVLNSKACRGAIMFGDSLLPSECSL 1153

Query: 64   IVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEILGKSGSNGTWNGLGQHELSIE 123
            +VEELK TSLCFQCAHGRPTTVPLVNLEALH QI +L ++ +S S+  W+GL +H++ +E
Sbjct: 1154 LVEELKHTSLCFQCAHGRPTTVPLVNLEALHNQIAKLRLMNESSSD-EWHGLHKHKVCVE 1213

Query: 124  RMLQRLSSA 133
            R++QRL+ A
Sbjct: 1214 RVVQRLNPA 1221

[Close]

BLAST of Lsi07G010460.1 vs. TAIR10
Match: AT4G35520.1 (AT4G35520.1 MUTL protein homolog 3)

HSP 1 Score: 196.8 bits (499), Expect = 8.4e-51
Identity = 97/134 (72.39%), Postives = 112/134 (83.58%), Query Frame = 1


Query: 1    MQTVPCILGVNLSDVDLLEFLHQLADTDGSSTMPPSVLRVLNSKACRGAIMFGDSLLPSE 60
            +  VPCILGVNLSDVDLLEFL QLADTDGSST+PPSVLRVLNSKACRGAIMFGDSLLPSE
Sbjct: 1042 LNAVPCILGVNLSDVDLLEFLQQLADTDGSSTIPPSVLRVLNSKACRGAIMFGDSLLPSE 1101

Query: 61   CSLIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEILGKSGSNGTWNGLGQHEL 120
            CSLI++ LKQTSLCFQCAHGRPTTVPLV+L+ALHKQI +L           W+GL + E+
Sbjct: 1102 CSLIIDGLKQTSLCFQCAHGRPTTVPLVDLKALHKQIAKL------SGRQVWHGLQRREI 1161

Query: 121  SIERMLQRLSSAES 135
            +++R   RL +A+S
Sbjct: 1162 TLDRAKSRLDNAKS 1169

[Close]

BLAST of Lsi07G010460.1 vs. NCBI nr
Match: gi|659095209|ref|XP_008448458.1| (PREDICTED: DNA mismatch repair protein MLH3 isoform X1 [Cucumis melo])

HSP 1 Score: 261.5 bits (667), Expect = 7.9e-67
Identity = 129/135 (95.56%), Postives = 131/135 (97.04%), Query Frame = 1


Query: 1    MQTVPCILGVNLSDVDLLEFLHQLADTDGSSTMPPSVLRVLNSKACRGAIMFGDSLLPSE 60
            +  VPCILGVNLSDVDLLEFLHQLADTDGSSTMPPSVLRVLNSKACRGAIMFGDSLLPSE
Sbjct: 1085 LMAVPCILGVNLSDVDLLEFLHQLADTDGSSTMPPSVLRVLNSKACRGAIMFGDSLLPSE 1144

Query: 61   CSLIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEILGKSGSNGTWNGLGQHEL 120
            CSLIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEI GKSGSNGTWNGLG+HEL
Sbjct: 1145 CSLIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEIHGKSGSNGTWNGLGRHEL 1204

Query: 121  SIERMLQRLSSAESL 136
            SIERMLQRLSSAE L
Sbjct: 1205 SIERMLQRLSSAEGL 1219

[Close]

BLAST of Lsi07G010460.1 vs. NCBI nr
Match: gi|659095215|ref|XP_008448461.1| (PREDICTED: DNA mismatch repair protein MLH3 isoform X2 [Cucumis melo])

HSP 1 Score: 261.5 bits (667), Expect = 7.9e-67
Identity = 129/135 (95.56%), Postives = 131/135 (97.04%), Query Frame = 1


Query: 1    MQTVPCILGVNLSDVDLLEFLHQLADTDGSSTMPPSVLRVLNSKACRGAIMFGDSLLPSE 60
            +  VPCILGVNLSDVDLLEFLHQLADTDGSSTMPPSVLRVLNSKACRGAIMFGDSLLPSE
Sbjct: 1082 LMAVPCILGVNLSDVDLLEFLHQLADTDGSSTMPPSVLRVLNSKACRGAIMFGDSLLPSE 1141

Query: 61   CSLIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEILGKSGSNGTWNGLGQHEL 120
            CSLIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEI GKSGSNGTWNGLG+HEL
Sbjct: 1142 CSLIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEIHGKSGSNGTWNGLGRHEL 1201

Query: 121  SIERMLQRLSSAESL 136
            SIERMLQRLSSAE L
Sbjct: 1202 SIERMLQRLSSAEGL 1216

[Close]

BLAST of Lsi07G010460.1 vs. NCBI nr
Match: gi|778674584|ref|XP_011650248.1| (PREDICTED: DNA mismatch repair protein MLH3 isoform X1 [Cucumis sativus])

HSP 1 Score: 255.4 bits (651), Expect = 5.7e-65
Identity = 125/135 (92.59%), Postives = 130/135 (96.30%), Query Frame = 1


Query: 1    MQTVPCILGVNLSDVDLLEFLHQLADTDGSSTMPPSVLRVLNSKACRGAIMFGDSLLPSE 60
            +  VPCILGVNLSDVDLLEFLHQLADTDGS+TMPPSVLRVLNSKACRGAIMFGDSLLPSE
Sbjct: 1088 LMAVPCILGVNLSDVDLLEFLHQLADTDGSATMPPSVLRVLNSKACRGAIMFGDSLLPSE 1147

Query: 61   CSLIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEILGKSGSNGTWNGLGQHEL 120
            CSL+VEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEI G+SGSNGTWNGLG+ EL
Sbjct: 1148 CSLLVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEIHGRSGSNGTWNGLGRQEL 1207

Query: 121  SIERMLQRLSSAESL 136
            SIERMLQRLSSAE L
Sbjct: 1208 SIERMLQRLSSAEGL 1222

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BLAST of Lsi07G010460.1 vs. NCBI nr
Match: gi|778674586|ref|XP_011650249.1| (PREDICTED: DNA mismatch repair protein MLH3 isoform X2 [Cucumis sativus])

HSP 1 Score: 255.4 bits (651), Expect = 5.7e-65
Identity = 125/135 (92.59%), Postives = 130/135 (96.30%), Query Frame = 1


Query: 1    MQTVPCILGVNLSDVDLLEFLHQLADTDGSSTMPPSVLRVLNSKACRGAIMFGDSLLPSE 60
            +  VPCILGVNLSDVDLLEFLHQLADTDGS+TMPPSVLRVLNSKACRGAIMFGDSLLPSE
Sbjct: 1083 LMAVPCILGVNLSDVDLLEFLHQLADTDGSATMPPSVLRVLNSKACRGAIMFGDSLLPSE 1142

Query: 61   CSLIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEILGKSGSNGTWNGLGQHEL 120
            CSL+VEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEI G+SGSNGTWNGLG+ EL
Sbjct: 1143 CSLLVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEIHGRSGSNGTWNGLGRQEL 1202

Query: 121  SIERMLQRLSSAESL 136
            SIERMLQRLSSAE L
Sbjct: 1203 SIERMLQRLSSAEGL 1217

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BLAST of Lsi07G010460.1 vs. NCBI nr
Match: gi|764511387|ref|XP_011461560.1| (PREDICTED: DNA mismatch repair protein MLH3 isoform X2 [Fragaria vesca subsp. vesca])

HSP 1 Score: 214.2 bits (544), Expect = 1.4e-52
Identity = 106/132 (80.30%), Postives = 118/132 (89.39%), Query Frame = 1


Query: 4    VPCILGVNLSDVDLLEFLHQLADTDGSSTMPPSVLRVLNSKACRGAIMFGDSLLPSECSL 63
            VPCILGVNLSDVDL+EFL QL+DTDGSSTMPPSVLR+LNSKACRGAIMFGDSLLPSECSL
Sbjct: 1107 VPCILGVNLSDVDLMEFLQQLSDTDGSSTMPPSVLRILNSKACRGAIMFGDSLLPSECSL 1166

Query: 64   IVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEILG-KSGSNGTWNGLGQHELSI 123
            IV+ELKQTSLCFQCAHGRPTT PLVNLEALHKQI ++  L  KSG++  W+GL +HELS+
Sbjct: 1167 IVDELKQTSLCFQCAHGRPTTAPLVNLEALHKQIAKIASLNQKSGADQGWHGLHRHELSL 1226

Query: 124  ERMLQRLSSAES 135
             R  QRL+SA S
Sbjct: 1227 ARAEQRLNSARS 1238

The following BLAST results are available for this feature:

BLAST of Lsi07G010460.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MLH3_ARATH	1.5e-49	72.39	DNA mismatch repair protein MLH3 OS=Arabidopsis thaliana GN=MLH3 PE=2 SV=2	[more]
MLH3_HUMAN	2.1e-11	40.35	DNA mismatch repair protein Mlh3 OS=Homo sapiens GN=MLH3 PE=1 SV=3	[more]
MLH3_YEAST	8.0e-11	46.77	DNA mismatch repair protein MLH3 OS=Saccharomyces cerevisiae (strain ATCC 204508...	[more]
PMS1_SCHPO	4.1e-07	35.96	DNA mismatch repair protein pms1 OS=Schizosaccharomyces pombe (strain 972 / ATCC...	[more]

BLAST of Lsi07G010460.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1I8_CUCSA	4.0e-65	92.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G000710 PE=4 SV=1	[more]
G7K187_MEDTR	1.7e-52	80.15	DNA mismatch repair protein, carboxy-terminal domain protein OS=Medicago truncat...	[more]
F6I0J7_VITVI	2.5e-51	82.17	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g00170 PE=4 SV=...	[more]
W9RKQ1_9ROSA	4.2e-51	77.86	DNA mismatch repair protein mutL OS=Morus notabilis GN=L484_007069 PE=4 SV=1	[more]
V7CM66_PHAVU	9.4e-51	77.52	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G116900g PE=4 SV=1	[more]

BLAST of Lsi07G010460.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G35520.1	8.4e-51	72.39	MUTL protein homolog 3	[more]

BLAST of Lsi07G010460.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659095209\|ref\|XP_008448458.1\|	7.9e-67	95.56	PREDICTED: DNA mismatch repair protein MLH3 isoform X1 [Cucumis melo]	[more]
gi\|659095215\|ref\|XP_008448461.1\|	7.9e-67	95.56	PREDICTED: DNA mismatch repair protein MLH3 isoform X2 [Cucumis melo]	[more]
gi\|778674584\|ref\|XP_011650248.1\|	5.7e-65	92.59	PREDICTED: DNA mismatch repair protein MLH3 isoform X1 [Cucumis sativus]	[more]
gi\|778674586\|ref\|XP_011650249.1\|	5.7e-65	92.59	PREDICTED: DNA mismatch repair protein MLH3 isoform X2 [Cucumis sativus]	[more]
gi\|764511387\|ref\|XP_011461560.1\|	1.4e-52	80.30	PREDICTED: DNA mismatch repair protein MLH3 isoform X2 [Fragaria vesca subsp. ve...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0032300	mismatch repair complex

Vocabulary: **Biological Process**
Term	Definition
GO:0007131	reciprocal meiotic recombination
GO:0006298	mismatch repair

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006298	mismatch repair
biological_process	GO:0007131	reciprocal meiotic recombination
cellular_component	GO:0032300	mismatch repair complex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0030983	mismatched DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi07G010460	Lsi07G010460	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi07G010460.1	Lsi07G010460.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi07G010460.1.CDS.1	Lsi07G010460.1.CDS.1	CDS
Lsi07G010460.1.CDS.2	Lsi07G010460.1.CDS.2	CDS
Lsi07G010460.1.CDS.3	Lsi07G010460.1.CDS.3	CDS
Lsi07G010460.1.CDS.4	Lsi07G010460.1.CDS.4	CDS
Lsi07G010460.1.CDS.5	Lsi07G010460.1.CDS.5	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi07G010460.1.three_prime_UTR.1	Lsi07G010460.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 122..135 scor
None	No IPR available	PANTHER	PTHR10073	DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL	coord: 2..109 score: 4.3
None	No IPR available	unknown	SSF118116	DNA mismatch repair protein MutL	coord: 4..87 score: 4.8