Lsi07G010460 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G010460
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	DNA mismatch repair protein mutL
Location	chr07 : 15853078 .. 15858005 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAACTGTAATAAAGCATTTATTGTGTGCTTGAAATTTGTAACAAATTTATATTTTTTTTTGGGTTAGAATTCCACTTCATGTGTTCTTATTATATTTTTATACAAACATTCATGTGTATGACATAATAGGTACCCTGCATATTAGGGGTTAATTTATCAGATGTAGATCTTCTGGAGTTTCTTCATCAGGTAACTGCGGACCTTTGCGCTTTAATACAAAATTTAATTGTTTCATCCAGCTATTAATTTTATTTAGCTGTTATATTGTTCCCTAAACACCTGAATAATTGCAAATGTTGCTATGTCTGCATATATAAGCTTGCTGAGACGTTTTTTACTTTAATTTTTTTGGATTGAAAGCTTGCTGATACAGATGGCTCATCAACAATGCCACCATCCGTACTTCGAGTTCTTAATTCAAAGGCCTGCAGAGGTACATGCTTAAACTTGTATAATATGTACAGATACCATGGATCAAGGGAAATTAGATGCTGCGTGGATGAGGTTGACTTAAGCTTTTCCGGATGATATTCATGGGTTTAACTTTTATTTATTTATTTTTTGGAAAAAAGATACGACACTTTTCATTAAGGGAATGAAAAGAGACTAATGCTAAAACAATACAAGGATACTGGAAACAAAGACAAATGCAGAAATAAACAAACAAATACAACAAGAAACCAAAACACCAATATACTTAGAAAGTAGTGATGAAAGCATTCCAGCGACTATTCCCTGAATTGAGAACCCTTCAAATTTCTTAGAAAGAGAACACTAAGTAGAAGACTTGAGATTGAGCCAAATCAAAATGAGCATAAGGAGCGTAACTGCTTGAGCAGAATTTTGGAAAATACGCTGATTTCTTTCTAACCAGAGCTCACAAAGAATGTCCTTCACAATATTAACCCTAATTAAATAAGCTTTTGCATTCTACCAAATGCCACAAAGCAGTTGAAGCACATTTGTCTTCCAAGAATCAGAGAAAACCCGATGAATAGAGAAAGCATCAAATAACAAAAATCAGCAGCTTCGCAAATAAATACAGTCAAAGAAGATGTGGTTGAGATATTCTCCTTCCTTGAAACATAAGGAGCACACTCATGGTAAAAAACACCGTGACGACATCTTTTTCTGCAAAATTTCAGCCAAATTGAGACTACCATTTAACATGATGCGAATGAGTATAAACCATCATAGGTTGACCTAGTGGTAAAAAGGGAGATACAGTCTCAATAAATGGATAAGAGGTCATGGGTTCAATTCATGGTGGCCACCTACTTAGGAATTAATTTCCTATGAGTTTCTTTGACACTCAAATGTTGTAGGGTCAGACGGGTTGTCCTGTGAGATTAGTTGAGGTACGCGTAAACTAGCCTGGACACTCACGGATAATAAAAAAAAAATGCAAATGAATATATTGGTTTTCTTTTGGACTTTTTGACTTCCAGATTGCTTTAAATAAGGCATTGTCAATAATTGTTGAAGAAGCCAAGAGAGAAGATAAGGATTTCACCGAAAACAATCTTGAAGATTCAAGAGCCCAAAATCGAGCGTAATGAAGAGAGGTCAAAAAGAAGATTTTGAAACTCAACCACTTCTTCATCCTCCAAGAGTCTCCTGAAAATAATATTCCAAGAAGATGTTGAGACATCTCAATAAGAAGAAACTGCCCTGCTTGTATTAACAACTATGGCGAATAATCTTGGGAAGCTATTGTTAAGAGTACATCACAAAGCCAAGGATCCTTCCAAAATGAAACACAAGTACCATTTCCAACTTTGTAAATAGCAAGACTTTCCACCTTTTTCCAAGCTTTGGAAATGCTAACCCATGGCCTTTGAGGGCTAGACAACCCATTGCTTTTTGTATGCCAAACAAACTCATTGGAACCATGAATGCTAATAATAACTCTCCTCCAAAGTGCATTTGGTTCTTTTATAAATCTCCAATCTCCAACCCTATTTGGCGAGAAGGGCTTGGTTCCTTAGATGAAAAGCTCCAATAACAAGCCTCCATGAGTTTTAGCTTTTGACACCACCCATATAACCAAGTGATTGATCTTGCTATGTTCCTTCCTAGAAAAAATTCCGCATCAAACATTCAAGCTCCATACTAACAGAAGAAGGCATAAGAAAAATTGACATGTATTAAGTAGGAATATTAGCCAAAACCAAGCTTGCACAAAGCTAAGTGACCCCCTTGAAAGGGTAAATCTTTTAATCGTTCAATTTTCTTCTAAAATTTGTCAATTAGAGGCTGCCAAAAAGTAACACGTTTGGGATAACCACTAAGTGGTAAGCCAAGATAAAGAAAAGGCAAGGATTCCACCTTGCAGCCTTGAAGAATATTGAAGAAGCTTGGAATCATCCACACCTATCCCAATTAAAGGAGATTTCTCCCAATTGATCTTTTGCCCAGAACACCATTGAAAGAAATTAATACTCTTTAGAAAAATTTCAAACATTTGATCATCATACTTGCAAAACAGTAGAGTGTCATCCGCGAATTGCAAAATTGGCACATAAATGTTATCCCTTCCAACCATTAACCCTTCATAGACACCTCTAGCAAAGACGCTAAAAACTTCACTAATAAGTAAGGAAAGGAAAGGGGAAAGAGGATCCCCTTGTTTTATACCCCGAGATGCAAAAATTCGGCCTCTTGGTCTACCATTAATGAAGACTGAAAAATTAGGACACTGGATGCACCCTCGAAGCCACTCAATCCACTTGGAATGAAACCCTTTGTGGTGCAATACTTCCTTCAGAATATCCCAATCACACAATCAAAAGCTTTTTCAATATTTAGCTTCAAATTCAACCTTTCTTCTTCTTCACTCTATGTTCTTCCATAATTTCATTACCAATAAGGATGGGAACTAATATTCGTCTTCCTTCACACTTTGATAAGGAGAAATAATAGAAGACTTACCTCTTTTAATCTTACCGCAATAACCTTTGCTTGAATATTGTAAATGGAAGAAGTCAAACTTATGGGCCTAGATCTTTGACAAACTGGCTGTTTCTTTTTCTGTCTAAGGCAAATAAGTTTTCTTTTAGACATGAACACTAAAACTGATATCCTCCTTCAAAAGATGCCATAACTTGATGAAAAATTATGTTGTAAGCCATCGGTTCCACGGGCTTTATTCTTCTTGCCAAGAGATTTTACAGAGCATTCCAAATTTCTTCATCCGAAAATGGTCTAATTAATTTCATTTTTTGCAGTAGAAATTCTGCTCCATAGTAAGTTGTTTGGAAAAATATTATAACCCGGGATTTTATGATACAAGGCAGTAAAAAATCGAACTATTTCTTCTTCAGTTTCTTTATAAGTCTACAAATAAGTCCCATCGGAAGCTTGCAACTTAGAAGTTTCAAGTTAGAGATTTCCCTTTTCTTGCCGATGACATTTTGTGAAAAAAAACTTGTGTTATCAACTTAAAATCCTTCTTCAAGCGAAGAAATTTGGCATTTTTGAAGAGAATTTCTTTCCTCAGTCATATATAAAGACGAGTTCAGTTTGTGCCAAAGAACGAGAATTTAATTCTTGCAAAGACAAAGGATTCTCTTCTACTTTACTATCCCACGAAGCAATTGCTGCCAAGAGAGCCTTTTCTTTCAACTTCTGATTTGCTTCATTAACAGAAAACAACATCTTTAGAGAATCCTTCAAATTTCTGAGTTTGGTGTTGATTACATAGCCAGGCCAACCACTAGAACAATCTTGCACCAAAATACTCTCAATAAGCTTTCCACAATCAGATTATAGAAATTTAGGTGTACACAAATCAAATTCTAGATATTTTTATAATCTCAATATTTCCCTTGAGCCATGGGTTGATCTGATTAGAGAAAATGAGTTCAATTTATGGTGACCACCTATCTAGGATTTAATATCTTGAGTTTCCTTAGCACCCAAATATTGTAGGGTTAGGTTGGTTGTCCTGTGAGTTTAGTTGAAGTGCGTCCTAGTTATAGTTATCCCACGCTCATGGAATTTTTTTTTTTTTTTTTTTTAAGATACTTCCATCAAGTAGTATCTCACTTCTTTGGAGCTAGATCGATCCAAGTCTTCAAACTATTTGATGCACTTCCCTGCTTATCGTCTCATTTCTGAGCCTTGGGGAAAACAATAGTCTGTTGACTGCTAGTATCATGTGTGTATTTTCATTTTCATGTGGACCTTTCAGTGAAATTTTTTTTTTTTAATAATTGTTTGATCAGGTGCAATTATGTTTGGAGACTCTTTGTTACCTTCAGAGTGCTCCCTCATTGTTGAAGAACTGAAGCAGACTTCTCTGTGTTTCCAAGTGAGTGAATCATTTTTGAGTCTGTTTTCACAGTGACAAAATTTAATAAAAAAATTTTCTCCCTTTTCCCCTTTTTGGGGGTGGGAGGAAATGACTAGTAATTGACAAGTAATTGACAAGTATGAGATGTTAAATGTGCAGTGTGCCCATGGACGGCCAACGACAGTTCCTCTTGTGAACTTGGAGGCATTGCATAAGCAGATAAAGGAGCTGGAAATACTGGGCAAAAGTGGTTCAAATGGAACATGGAATGGTCTGGGACAACACGAGCTGAGCATAGAAAGGATGTTGCAGCGCTTGAGTTCGGCCGAAAGTTTATAGTACTCCTGGGAAATGCTGCCTTTTCATCGAGGAGACTAATTGCCCAGGGGCGGAAATACCAGTCTGCAGAAGATAATGGATTGAGTAGCATTGTTAGATCATGTATAGAACCAGAAGTTGGCGATGATGATTTGTCAAAAAAGAGCAGTGTTTCTGTAGTTTAGGTTTCCTTGGAGTTTTGGTTGTAATTCTTCCAATAAACATTATCTGCCCTCCATCTAAATATATTCTTTTGCAATATGGTGAATAAAGCTAAATGCATATATGCTTCTTAAAAGATTACTGAACGAA

mRNA sequence

ATGCAAACTGTACCCTGCATATTAGGGGTTAATTTATCAGATGTAGATCTTCTGGAGTTTCTTCATCAGCTTGCTGATACAGATGGCTCATCAACAATGCCACCATCCGTACTTCGAGTTCTTAATTCAAAGGCCTGCAGAGGTGCAATTATGTTTGGAGACTCTTTGTTACCTTCAGAGTGCTCCCTCATTGTTGAAGAACTGAAGCAGACTTCTCTGTGTTTCCAATGTGCCCATGGACGGCCAACGACAGTTCCTCTTGTGAACTTGGAGGCATTGCATAAGCAGATAAAGGAGCTGGAAATACTGGGCAAAAGTGGTTCAAATGGAACATGGAATGGTCTGGGACAACACGAGCTGAGCATAGAAAGGATGTTGCAGCGCTTGAGTTCGGCCGAAAGTTTATAGTACTCCTGGGAAATGCTGCCTTTTCATCGAGGAGACTAATTGCCCAGGGGCGGAAATACCAGTCTGCAGAAGATAATGGATTGAGTAGCATTGTTAGATCATGTATAGAACCAGAAGTTGGCGATGATGATTTGTCAAAAAAGAGCAGTGTTTCTGTAGTTTAGGTTTCCTTGGAGTTTTGGTTGTAATTCTTCCAATAAACATTATCTGCCCTCCATCTAAATATATTCTTTTGCAATATGGTGAATAAAGCTAAATGCATATATGCTTCTTAAAAGATTACTGAACGAA

Coding sequence (CDS)

ATGCAAACTGTACCCTGCATATTAGGGGTTAATTTATCAGATGTAGATCTTCTGGAGTTTCTTCATCAGCTTGCTGATACAGATGGCTCATCAACAATGCCACCATCCGTACTTCGAGTTCTTAATTCAAAGGCCTGCAGAGGTGCAATTATGTTTGGAGACTCTTTGTTACCTTCAGAGTGCTCCCTCATTGTTGAAGAACTGAAGCAGACTTCTCTGTGTTTCCAATGTGCCCATGGACGGCCAACGACAGTTCCTCTTGTGAACTTGGAGGCATTGCATAAGCAGATAAAGGAGCTGGAAATACTGGGCAAAAGTGGTTCAAATGGAACATGGAATGGTCTGGGACAACACGAGCTGAGCATAGAAAGGATGTTGCAGCGCTTGAGTTCGGCCGAAAGTTTATAG

Protein sequence

MQTVPCILGVNLSDVDLLEFLHQLADTDGSSTMPPSVLRVLNSKACRGAIMFGDSLLPSECSLIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEILGKSGSNGTWNGLGQHELSIERMLQRLSSAESL

Homology

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BLAST of Lsi07G010460 vs. Swiss-Prot
Match: MLH3_ARATH (DNA mismatch repair protein MLH3 OS=Arabidopsis thaliana GN=MLH3 PE=2 SV=2)

HSP 1 Score: 196.8 bits (499), Expect = 1.5e-49
Identity = 97/134 (72.39%), Postives = 112/134 (83.58%), Query Frame = 1


Query: 1    MQTVPCILGVNLSDVDLLEFLHQLADTDGSSTMPPSVLRVLNSKACRGAIMFGDSLLPSE 60
            +  VPCILGVNLSDVDLLEFL QLADTDGSST+PPSVLRVLNSKACRGAIMFGDSLLPSE
Sbjct: 1028 LNAVPCILGVNLSDVDLLEFLQQLADTDGSSTIPPSVLRVLNSKACRGAIMFGDSLLPSE 1087

Query: 61   CSLIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEILGKSGSNGTWNGLGQHEL 120
            CSLI++ LKQTSLCFQCAHGRPTTVPLV+L+ALHKQI +L           W+GL + E+
Sbjct: 1088 CSLIIDGLKQTSLCFQCAHGRPTTVPLVDLKALHKQIAKL------SGRQVWHGLQRREI 1147

Query: 121  SIERMLQRLSSAES 135
            +++R   RL +A+S
Sbjct: 1148 TLDRAKSRLDNAKS 1155

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BLAST of Lsi07G010460 vs. Swiss-Prot
Match: MLH3_HUMAN (DNA mismatch repair protein Mlh3 OS=Homo sapiens GN=MLH3 PE=1 SV=3)

HSP 1 Score: 70.1 bits (170), Expect = 2.1e-11
Identity = 46/114 (40.35%), Postives = 60/114 (52.63%), Query Frame = 1


Query: 19   EFLHQLADTDG-SSTMPPSVLRVLNSKACRGAIMFGDSLLPSECSLIVEELKQTSLCFQC 78
            E L  L  T G   T+P +V +VL S+AC GAI F D L   E   ++E L    L FQC
Sbjct: 1334 EQLELLQTTGGIQGTLPLTVQKVLASQACHGAIKFNDGLSLQESCRLIEALSSCQLPFQC 1393

Query: 79   AHGRPTTVPLVNLEAL--HKQIK-ELEILGKSGSNGTWNGLGQHELSIERMLQR 129
            AHGRP+ +PL +++ L   KQIK  L  L K      W   G+ E    + LQ+
Sbjct: 1394 AHGRPSMLPLADIDHLEQEKQIKPNLTKLRKMAQ--AWRLFGKAECDTRQSLQQ 1445

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BLAST of Lsi07G010460 vs. Swiss-Prot
Match: MLH3_YEAST (DNA mismatch repair protein MLH3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MLH3 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 8.0e-11
Identity = 29/62 (46.77%), Postives = 41/62 (66.13%), Query Frame = 1


Query: 30  SSTMPPSVLRVLNSKACRGAIMFGDSLLPSECSLIVEELKQTSLCFQCAHGRPTTVPLVN 89
           SS +P     +LNSKACR A+MFGD L   EC +++ +L +    F+CAHGRP+ VP+  
Sbjct: 654 SSCVPTVFHEILNSKACRSAVMFGDELTRQECIILISKLSRCHNPFECAHGRPSMVPIAE 713

Query: 90  LE 92
           L+
Sbjct: 714 LK 715

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BLAST of Lsi07G010460 vs. Swiss-Prot
Match: PMS1_SCHPO (DNA mismatch repair protein pms1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pms1 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.1e-07
Identity = 32/89 (35.96%), Postives = 46/89 (51.69%), Query Frame = 1


Query: 3   TVPCILGVNLSDVDLLEFLHQLADTDGSSTMPPSVLRVLNSKACRGAIMFGDSLLPSECS 62
           +VP    V     DLLE +  L++          + R+L SKACR ++M G +L  SE +
Sbjct: 704 SVPTSKNVIFDTSDLLEIISVLSEHPQIDPFSSRLERMLASKACRSSVMIGRALTISEMN 763

Query: 63  LIVEELKQTSLCFQCAHGRPTTVPLVNLE 92
            IV  L + S  + C HGRPT   L+ L+
Sbjct: 764 TIVRHLAELSKPWNCPHGRPTMRHLLRLK 792

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BLAST of Lsi07G010460 vs. TrEMBL
Match: A0A0A0L1I8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G000710 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 4.0e-65
Identity = 125/135 (92.59%), Postives = 130/135 (96.30%), Query Frame = 1


Query: 1    MQTVPCILGVNLSDVDLLEFLHQLADTDGSSTMPPSVLRVLNSKACRGAIMFGDSLLPSE 60
            +  VPCILGVNLSDVDLLEFLHQLADTDGS+TMPPSVLRVLNSKACRGAIMFGDSLLPSE
Sbjct: 1083 LMAVPCILGVNLSDVDLLEFLHQLADTDGSATMPPSVLRVLNSKACRGAIMFGDSLLPSE 1142

Query: 61   CSLIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEILGKSGSNGTWNGLGQHEL 120
            CSL+VEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEI G+SGSNGTWNGLG+ EL
Sbjct: 1143 CSLLVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEIHGRSGSNGTWNGLGRQEL 1202

Query: 121  SIERMLQRLSSAESL 136
            SIERMLQRLSSAE L
Sbjct: 1203 SIERMLQRLSSAEGL 1217

[Close]

BLAST of Lsi07G010460 vs. TrEMBL
Match: G7K187_MEDTR (DNA mismatch repair protein, carboxy-terminal domain protein OS=Medicago truncatula GN=MTR_5g024250 PE=4 SV=2)

HSP 1 Score: 213.4 bits (542), Expect = 1.7e-52
Identity = 105/131 (80.15%), Postives = 118/131 (90.08%), Query Frame = 1


Query: 4    VPCILGVNLSDVDLLEFLHQLADTDGSSTMPPSVLRVLNSKACRGAIMFGDSLLPSECSL 63
            VPCILGVNL+DVDLLEFL QLADTDGSSTMPPSV+R+LNSK+CRGAIMFGDSLLPSECSL
Sbjct: 1103 VPCILGVNLNDVDLLEFLQQLADTDGSSTMPPSVVRLLNSKSCRGAIMFGDSLLPSECSL 1162

Query: 64   IVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEILGKSGSNGTWNGLGQHELSIE 123
            +VEELK TSLCFQCAHGRPTTVPLVNLEAL  QI +L ++ KS SN  W+GL +HE+SI+
Sbjct: 1163 LVEELKHTSLCFQCAHGRPTTVPLVNLEALRNQIDKLGLMNKSSSN-KWHGLQRHEVSID 1222

Query: 124  RMLQRLSSAES 135
            R +QRLSSA S
Sbjct: 1223 RAVQRLSSANS 1232

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BLAST of Lsi07G010460 vs. TrEMBL
Match: F6I0J7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g00170 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 2.5e-51
Identity = 106/129 (82.17%), Postives = 114/129 (88.37%), Query Frame = 1


Query: 4    VPCILGVNLSDVDLLEFLHQLADTDGSSTMPPSVLRVLNSKACRGAIMFGDSLLPSECSL 63
            VPCILGVNLSDVDLLEFL QLADTDGSSTMPPSVLRVLN KACRGAIMFGD+LLPSECSL
Sbjct: 1091 VPCILGVNLSDVDLLEFLQQLADTDGSSTMPPSVLRVLNLKACRGAIMFGDALLPSECSL 1150

Query: 64   IVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEILGKSGSNGTWNGLGQHELSIE 123
            IVEELK+TSLCFQCAHGRPTTVPLVNLEALHKQI +L   G  GS   W+GL +HELS+E
Sbjct: 1151 IVEELKRTSLCFQCAHGRPTTVPLVNLEALHKQIAKLG-SGGGGSIELWHGLRRHELSLE 1210

Query: 124  RMLQRLSSA 133
            R   RL+S+
Sbjct: 1211 RAAHRLNSS 1218

[Close]

BLAST of Lsi07G010460 vs. TrEMBL
Match: W9RKQ1_9ROSA (DNA mismatch repair protein mutL OS=Morus notabilis GN=L484_007069 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 4.2e-51
Identity = 102/131 (77.86%), Postives = 115/131 (87.79%), Query Frame = 1


Query: 4    VPCILGVNLSDVDLLEFLHQLADTDGSSTMPPSVLRVLNSKACRGAIMFGDSLLPSECSL 63
            VPCILGVNLSD+DL+EFL QLADTDGSS +PPSVLR+LNSKACRGAIMFGDSLLPSECSL
Sbjct: 993  VPCILGVNLSDLDLMEFLQQLADTDGSSMIPPSVLRILNSKACRGAIMFGDSLLPSECSL 1052

Query: 64   IVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEILGKSGSNGTWNGLGQHELSIE 123
            I+ ELKQT+LCFQCAHGRPTTVPLVNLEALHKQI ++ ++     NG W+GL +HEL+IE
Sbjct: 1053 IIAELKQTALCFQCAHGRPTTVPLVNLEALHKQIAKIALM-NDDLNGLWHGLCRHELTIE 1112

Query: 124  RMLQRLSSAES 135
            R  QRLS A S
Sbjct: 1113 RAAQRLSLATS 1122

[Close]

BLAST of Lsi07G010460 vs. TrEMBL
Match: V7CM66_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G116900g PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 9.4e-51
Identity = 100/129 (77.52%), Postives = 116/129 (89.92%), Query Frame = 1


Query: 4    VPCILGVNLSDVDLLEFLHQLADTDGSSTMPPSVLRVLNSKACRGAIMFGDSLLPSECSL 63
            VPCILGV L+DVDLLEFL QLADTDGSSTMPPSV+RVLNSKACRGAIMFGDSLLPSECSL
Sbjct: 1094 VPCILGVKLNDVDLLEFLQQLADTDGSSTMPPSVIRVLNSKACRGAIMFGDSLLPSECSL 1153

Query: 64   IVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEILGKSGSNGTWNGLGQHELSIE 123
            +VEELK TSLCFQCAHGRPTTVPLVNLEALH QI +L ++ +S S+  W+GL +H++ +E
Sbjct: 1154 LVEELKHTSLCFQCAHGRPTTVPLVNLEALHNQIAKLRLMNESSSD-EWHGLHKHKVCVE 1213

Query: 124  RMLQRLSSA 133
            R++QRL+ A
Sbjct: 1214 RVVQRLNPA 1221

[Close]

BLAST of Lsi07G010460 vs. TAIR10
Match: AT4G35520.1 (AT4G35520.1 MUTL protein homolog 3)

HSP 1 Score: 196.8 bits (499), Expect = 8.4e-51
Identity = 97/134 (72.39%), Postives = 112/134 (83.58%), Query Frame = 1


Query: 1    MQTVPCILGVNLSDVDLLEFLHQLADTDGSSTMPPSVLRVLNSKACRGAIMFGDSLLPSE 60
            +  VPCILGVNLSDVDLLEFL QLADTDGSST+PPSVLRVLNSKACRGAIMFGDSLLPSE
Sbjct: 1042 LNAVPCILGVNLSDVDLLEFLQQLADTDGSSTIPPSVLRVLNSKACRGAIMFGDSLLPSE 1101

Query: 61   CSLIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEILGKSGSNGTWNGLGQHEL 120
            CSLI++ LKQTSLCFQCAHGRPTTVPLV+L+ALHKQI +L           W+GL + E+
Sbjct: 1102 CSLIIDGLKQTSLCFQCAHGRPTTVPLVDLKALHKQIAKL------SGRQVWHGLQRREI 1161

Query: 121  SIERMLQRLSSAES 135
            +++R   RL +A+S
Sbjct: 1162 TLDRAKSRLDNAKS 1169

[Close]

BLAST of Lsi07G010460 vs. NCBI nr
Match: gi|659095209|ref|XP_008448458.1| (PREDICTED: DNA mismatch repair protein MLH3 isoform X1 [Cucumis melo])

HSP 1 Score: 261.5 bits (667), Expect = 7.9e-67
Identity = 129/135 (95.56%), Postives = 131/135 (97.04%), Query Frame = 1


Query: 1    MQTVPCILGVNLSDVDLLEFLHQLADTDGSSTMPPSVLRVLNSKACRGAIMFGDSLLPSE 60
            +  VPCILGVNLSDVDLLEFLHQLADTDGSSTMPPSVLRVLNSKACRGAIMFGDSLLPSE
Sbjct: 1085 LMAVPCILGVNLSDVDLLEFLHQLADTDGSSTMPPSVLRVLNSKACRGAIMFGDSLLPSE 1144

Query: 61   CSLIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEILGKSGSNGTWNGLGQHEL 120
            CSLIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEI GKSGSNGTWNGLG+HEL
Sbjct: 1145 CSLIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEIHGKSGSNGTWNGLGRHEL 1204

Query: 121  SIERMLQRLSSAESL 136
            SIERMLQRLSSAE L
Sbjct: 1205 SIERMLQRLSSAEGL 1219

[Close]

BLAST of Lsi07G010460 vs. NCBI nr
Match: gi|659095215|ref|XP_008448461.1| (PREDICTED: DNA mismatch repair protein MLH3 isoform X2 [Cucumis melo])

HSP 1 Score: 261.5 bits (667), Expect = 7.9e-67
Identity = 129/135 (95.56%), Postives = 131/135 (97.04%), Query Frame = 1


Query: 1    MQTVPCILGVNLSDVDLLEFLHQLADTDGSSTMPPSVLRVLNSKACRGAIMFGDSLLPSE 60
            +  VPCILGVNLSDVDLLEFLHQLADTDGSSTMPPSVLRVLNSKACRGAIMFGDSLLPSE
Sbjct: 1082 LMAVPCILGVNLSDVDLLEFLHQLADTDGSSTMPPSVLRVLNSKACRGAIMFGDSLLPSE 1141

Query: 61   CSLIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEILGKSGSNGTWNGLGQHEL 120
            CSLIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEI GKSGSNGTWNGLG+HEL
Sbjct: 1142 CSLIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEIHGKSGSNGTWNGLGRHEL 1201

Query: 121  SIERMLQRLSSAESL 136
            SIERMLQRLSSAE L
Sbjct: 1202 SIERMLQRLSSAEGL 1216

[Close]

BLAST of Lsi07G010460 vs. NCBI nr
Match: gi|778674584|ref|XP_011650248.1| (PREDICTED: DNA mismatch repair protein MLH3 isoform X1 [Cucumis sativus])

HSP 1 Score: 255.4 bits (651), Expect = 5.7e-65
Identity = 125/135 (92.59%), Postives = 130/135 (96.30%), Query Frame = 1


Query: 1    MQTVPCILGVNLSDVDLLEFLHQLADTDGSSTMPPSVLRVLNSKACRGAIMFGDSLLPSE 60
            +  VPCILGVNLSDVDLLEFLHQLADTDGS+TMPPSVLRVLNSKACRGAIMFGDSLLPSE
Sbjct: 1088 LMAVPCILGVNLSDVDLLEFLHQLADTDGSATMPPSVLRVLNSKACRGAIMFGDSLLPSE 1147

Query: 61   CSLIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEILGKSGSNGTWNGLGQHEL 120
            CSL+VEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEI G+SGSNGTWNGLG+ EL
Sbjct: 1148 CSLLVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEIHGRSGSNGTWNGLGRQEL 1207

Query: 121  SIERMLQRLSSAESL 136
            SIERMLQRLSSAE L
Sbjct: 1208 SIERMLQRLSSAEGL 1222

[Close]

BLAST of Lsi07G010460 vs. NCBI nr
Match: gi|778674586|ref|XP_011650249.1| (PREDICTED: DNA mismatch repair protein MLH3 isoform X2 [Cucumis sativus])

HSP 1 Score: 255.4 bits (651), Expect = 5.7e-65
Identity = 125/135 (92.59%), Postives = 130/135 (96.30%), Query Frame = 1


Query: 1    MQTVPCILGVNLSDVDLLEFLHQLADTDGSSTMPPSVLRVLNSKACRGAIMFGDSLLPSE 60
            +  VPCILGVNLSDVDLLEFLHQLADTDGS+TMPPSVLRVLNSKACRGAIMFGDSLLPSE
Sbjct: 1083 LMAVPCILGVNLSDVDLLEFLHQLADTDGSATMPPSVLRVLNSKACRGAIMFGDSLLPSE 1142

Query: 61   CSLIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEILGKSGSNGTWNGLGQHEL 120
            CSL+VEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEI G+SGSNGTWNGLG+ EL
Sbjct: 1143 CSLLVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEIHGRSGSNGTWNGLGRQEL 1202

Query: 121  SIERMLQRLSSAESL 136
            SIERMLQRLSSAE L
Sbjct: 1203 SIERMLQRLSSAEGL 1217

[Close]

BLAST of Lsi07G010460 vs. NCBI nr
Match: gi|764511387|ref|XP_011461560.1| (PREDICTED: DNA mismatch repair protein MLH3 isoform X2 [Fragaria vesca subsp. vesca])

HSP 1 Score: 214.2 bits (544), Expect = 1.4e-52
Identity = 106/132 (80.30%), Postives = 118/132 (89.39%), Query Frame = 1


Query: 4    VPCILGVNLSDVDLLEFLHQLADTDGSSTMPPSVLRVLNSKACRGAIMFGDSLLPSECSL 63
            VPCILGVNLSDVDL+EFL QL+DTDGSSTMPPSVLR+LNSKACRGAIMFGDSLLPSECSL
Sbjct: 1107 VPCILGVNLSDVDLMEFLQQLSDTDGSSTMPPSVLRILNSKACRGAIMFGDSLLPSECSL 1166

Query: 64   IVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEILG-KSGSNGTWNGLGQHELSI 123
            IV+ELKQTSLCFQCAHGRPTT PLVNLEALHKQI ++  L  KSG++  W+GL +HELS+
Sbjct: 1167 IVDELKQTSLCFQCAHGRPTTAPLVNLEALHKQIAKIASLNQKSGADQGWHGLHRHELSL 1226

Query: 124  ERMLQRLSSAES 135
             R  QRL+SA S
Sbjct: 1227 ARAEQRLNSARS 1238

The following BLAST results are available for this feature:

BLAST of Lsi07G010460 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MLH3_ARATH	1.5e-49	72.39	DNA mismatch repair protein MLH3 OS=Arabidopsis thaliana GN=MLH3 PE=2 SV=2	[more]
MLH3_HUMAN	2.1e-11	40.35	DNA mismatch repair protein Mlh3 OS=Homo sapiens GN=MLH3 PE=1 SV=3	[more]
MLH3_YEAST	8.0e-11	46.77	DNA mismatch repair protein MLH3 OS=Saccharomyces cerevisiae (strain ATCC 204508...	[more]
PMS1_SCHPO	4.1e-07	35.96	DNA mismatch repair protein pms1 OS=Schizosaccharomyces pombe (strain 972 / ATCC...	[more]

BLAST of Lsi07G010460 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1I8_CUCSA	4.0e-65	92.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G000710 PE=4 SV=1	[more]
G7K187_MEDTR	1.7e-52	80.15	DNA mismatch repair protein, carboxy-terminal domain protein OS=Medicago truncat...	[more]
F6I0J7_VITVI	2.5e-51	82.17	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g00170 PE=4 SV=...	[more]
W9RKQ1_9ROSA	4.2e-51	77.86	DNA mismatch repair protein mutL OS=Morus notabilis GN=L484_007069 PE=4 SV=1	[more]
V7CM66_PHAVU	9.4e-51	77.52	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G116900g PE=4 SV=1	[more]

BLAST of Lsi07G010460 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G35520.1	8.4e-51	72.39	MUTL protein homolog 3	[more]

BLAST of Lsi07G010460 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659095209\|ref\|XP_008448458.1\|	7.9e-67	95.56	PREDICTED: DNA mismatch repair protein MLH3 isoform X1 [Cucumis melo]	[more]
gi\|659095215\|ref\|XP_008448461.1\|	7.9e-67	95.56	PREDICTED: DNA mismatch repair protein MLH3 isoform X2 [Cucumis melo]	[more]
gi\|778674584\|ref\|XP_011650248.1\|	5.7e-65	92.59	PREDICTED: DNA mismatch repair protein MLH3 isoform X1 [Cucumis sativus]	[more]
gi\|778674586\|ref\|XP_011650249.1\|	5.7e-65	92.59	PREDICTED: DNA mismatch repair protein MLH3 isoform X2 [Cucumis sativus]	[more]
gi\|764511387\|ref\|XP_011461560.1\|	1.4e-52	80.30	PREDICTED: DNA mismatch repair protein MLH3 isoform X2 [Fragaria vesca subsp. ve...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0032300	mismatch repair complex

Vocabulary: **Biological Process**
Term	Definition
GO:0007131	reciprocal meiotic recombination
GO:0006298	mismatch repair

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006298	mismatch repair
biological_process	GO:0007131	reciprocal meiotic recombination
cellular_component	GO:0032300	mismatch repair complex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0030983	mismatched DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G010460.1	Lsi07G010460.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 122..135 scor
None	No IPR available	PANTHER	PTHR10073	DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL	coord: 2..109 score: 4.3
None	No IPR available	unknown	SSF118116	DNA mismatch repair protein MutL	coord: 4..87 score: 4.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi07G010460	Cucsa.323180	Cucumber (Gy14) v1	cgylsiB530
Lsi07G010460	Cla008952	Watermelon (97103) v1	lsiwmB429
Lsi07G010460	MELO3C013715	Melon (DHL92) v3.5.1	lsimeB446
Lsi07G010460	ClCG10G000180	Watermelon (Charleston Gray)	lsiwcgB389

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi07G010460	Bottle gourd (USVL1VR-Ls)	lsilsiB143
Lsi07G010460	Cucurbita maxima (Rimu)	cmalsiB324
Lsi07G010460	Cucurbita maxima (Rimu)	cmalsiB452
Lsi07G010460	Cucurbita maxima (Rimu)	cmalsiB617
Lsi07G010460	Cucurbita maxima (Rimu)	cmalsiB776
Lsi07G010460	Cucurbita moschata (Rifu)	cmolsiB313
Lsi07G010460	Cucurbita moschata (Rifu)	cmolsiB439
Lsi07G010460	Cucurbita moschata (Rifu)	cmolsiB605
Lsi07G010460	Cucurbita moschata (Rifu)	cmolsiB767
Lsi07G010460	Cucurbita pepo (Zucchini)	cpelsiB066
Lsi07G010460	Cucurbita pepo (Zucchini)	cpelsiB183
Lsi07G010460	Cucurbita pepo (Zucchini)	cpelsiB474
Lsi07G010460	Cucurbita pepo (Zucchini)	cpelsiB722
Lsi07G010460	Wild cucumber (PI 183967)	cpilsiB227
Lsi07G010460	Wild cucumber (PI 183967)	cpilsiB476
Lsi07G010460	Cucumber (Chinese Long) v2	culsiB228
Lsi07G010460	Cucumber (Chinese Long) v2	culsiB468
Lsi07G010460	Melon (DHL92) v3.5.1	lsimeB459
Lsi07G010460	Watermelon (Charleston Gray)	lsiwcgB395
Lsi07G010460	Watermelon (97103) v1	lsiwmB453
Lsi07G010460	Cucumber (Gy14) v2	cgyblsiB217
Lsi07G010460	Melon (DHL92) v3.6.1	lsimedB462
Lsi07G010460	Melon (DHL92) v3.6.1	lsimedB477
Lsi07G010460	Silver-seed gourd	carlsiB146
Lsi07G010460	Silver-seed gourd	carlsiB368
Lsi07G010460	Silver-seed gourd	carlsiB389
Lsi07G010460	Cucumber (Chinese Long) v3	cuclsiB250
Lsi07G010460	Cucumber (Chinese Long) v3	cuclsiB498
Lsi07G010460	Watermelon (97103) v2	lsiwmbB392
Lsi07G010460	Watermelon (97103) v2	lsiwmbB395
Lsi07G010460	Wax gourd	lsiwgoB540
Lsi07G010460	Wax gourd	lsiwgoB569